Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002473

Physical Location & Seq

Genomic Coordinates Forward (+)

12622404 .. 12625908

Gene Structure 3505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG080900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAAGAGCATATTCCTCCGCCGAATTCGGATCCCGAGTTCAGGAGCGAGTTGACTCGGACCGGCGGCTCCAACTCGGCGTCGTCCTCCTTCGTTGCTCTTCGGACTTGCGCGCATGCAACACCGGGCACAGCCACAGAGTGGACAAATGAGAAGCACAGATCGTATATAAATTCCTTAGAAACATCATTTGTAAATAAATTGTACCATTCCAGGCATTTGCGGGACTGCCATCCACAAAAGTATGTTCAGGGGATACATCCATCAGAAGAGTTGCCTTTCAAGACTTATAATTCTTCTGACCAGGTCAGGGAGTCAAATCTGTTCATTGTTGTTCGAGATAGGCGTTCTCAGAAGATCATCTCTTCAAGGAATGAAACTCTGCTGGAAAGCACCGCTGATTCTAACGTTACTATGGAAAGGCCCCGGATGGATCATATAGTGTCTTGTTATAAAGGGACCCACCAAAGAAGGAAACCGACCTCAGAACACGCAAGAACTTCAGAGCAGAACCCTGCATGTCATCAGGATTCAGTTGGCAGTGCTGCAGAAGTTTCGGGTCAGAACTTTGTGGTTGAGGACAACAGAGGGAAGCTAAACTGTGAATTCATACCAAAAAGGCTTAAAAGGGCTTCACCCAACTCTTCCAGCAATGATCAACTTGTGCCATTGGGAAATTTTGATACAAAGGAGCTTTCAATGGTCCATAATACTCCCTCCGGAAGAGAAGAACAAGGGCATCATCAGTTGCTATTAGAGCACCGTGAGTGCTTCATCTGTCCAAAATCTATCTGCACTGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

30.34

Weight (kDa)

6.95

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33980 AT4G33980
fragaria_vesca	FvH4_2g05920 FvH4_2g05920 FvH4_2g05920
malus_domestica	MD05G1081700.v1.1
prunus_persica	Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1
pyrus_communis	pycom05g07650
rosa_chinensis	RchiOBHm_Chr6g0257491
rosa_laevigata	RLG00000014702
rosa_multiflora	Rmu_sc0004564.1_g000004 Rmu_sc0010794.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208810
rosa_rugosa	Rorug02G0320800 Rorug05G0571600 Rorug05G0571600 Rorug05G0571600 Rorug05G0571600
rosa_samantha	Rh2CG357100 Rh2DG395200 Rh6AG089100 Rh6BG080900 Rh6CG077700 Rh6DG073300
rosa_wichuraiana	Rw2G030360 Rw6G007810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	291, 453
AccB7I	CCANNNNNTGG	1 cut(s)	141
AccII	CGCG	1 cut(s)	113
AccIII	TCCGGA	1 cut(s)	719
AciI	CCGC	4 cut(s)	20, 66, 223, 396
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	3 cut(s)	26, 39, 441
AcsI	RAATTY	4 cut(s)	25, 172, 605, 676
AcuI	CTGAAG	1 cut(s)	486
AcyI	GRCGYC	1 cut(s)	80
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	3 cut(s)	42, 141, 310
AgsI	TTSAA	3 cut(s)	283, 369, 699
AjnI	CCWGG	2 cut(s)	212, 303
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	2 cut(s)	595, 694
AluI	AGCT	2 cut(s)	595, 694
Alw21I	GWGCWC	1 cut(s)	762
AlwI	GGATC	3 cut(s)	26, 39, 441
Ama87I	CYCGRG	1 cut(s)	35
Aor13HI	TCCGGA	1 cut(s)	719
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	545
ApoI	RAATTY	4 cut(s)	25, 172, 605, 676
AspLEI	GCGC	2 cut(s)	113, 115
AspS9I	GGNCC	4 cut(s)	60, 423, 459, 703
AsuC2I	CCSGG	2 cut(s)	126, 427
AsuHPI	GGTGA	1 cut(s)	627
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	3 cut(s)	60, 459, 703
BaeGI	GKGCMC	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	762
BbvI	GCAGC	1 cut(s)	532
BccI	CCATC	3 cut(s)	240, 271, 424
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	2 cut(s)	214, 305
BciVI	GTATCC	1 cut(s)	249
BclI	TGATCA	1 cut(s)	655
BcnI	CCSGG	2 cut(s)	126, 427
BfmI	CTRYAG	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	2 cut(s)	67, 546
BlsI	GCNGC	2 cut(s)	68, 547
Bme1390I	CCNGG	4 cut(s)	126, 214, 305, 427
Bme18I	GGWCC	3 cut(s)	60, 459, 703
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	4 cut(s)	60, 423, 459, 703
BmiI	GGNNCC	5 cut(s)	33, 70, 425, 460, 461
BmrFI	CCNGG	4 cut(s)	126, 214, 305, 427
BmsI	GCATC	1 cut(s)	748
BpuMI	CCSGG	2 cut(s)	126, 427
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	1 cut(s)	719
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 141, 310
Bse118I	RCCGGY	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	658
BseAI	TCCGGA	1 cut(s)	719
BseBI	CCWGG	2 cut(s)	214, 305
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	3 cut(s)	232, 259, 435
BseLI	CCNNNNNNNGG	3 cut(s)	42, 141, 310
BseMI	GCAATG	1 cut(s)	658
BseMII	CTCAG	2 cut(s)	365, 498
BsePI	GCGCGC	1 cut(s)	111
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	532
BsgI	GTGCAG	1 cut(s)	778
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	762
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	4 cut(s)	63, 125, 427, 720
BslFI	GGGAC	2 cut(s)	239, 472
BslI	CCNNNNNNNGG	3 cut(s)	42, 141, 310
BsmFI	GGGAC	2 cut(s)	239, 472
BsnI	GGCC	1 cut(s)	424
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	131, 762
Bsp13I	TCCGGA	1 cut(s)	719
Bsp143I	GATC	5 cut(s)	31, 161, 357, 433, 655
BspACI	CCGC	4 cut(s)	20, 66, 223, 396
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	2 cut(s)	364, 497
BspEI	TCCGGA	1 cut(s)	719
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	5 cut(s)	33, 70, 425, 460, 461
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	3 cut(s)	26, 39, 441
BspQI	GCTCTTC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	658
BsrFI	RCCGGY	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	425
BssHII	GCGCGC	1 cut(s)	111
BssMI	GATC	5 cut(s)	31, 161, 357, 433, 655
BssNI	GRCGYC	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	214, 305
Bst4CI	ACNGT	2 cut(s)	602, 764
Bst6I	CTCTTC	5 cut(s)	105, 264, 370, 649, 718
BstACI	GRCGYC	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	113, 117
BstDEI	CTNAG	4 cut(s)	178, 351, 484, 804
BstF5I	GGATG	3 cut(s)	232, 259, 435
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	113, 115
BstKTI	GATC	5 cut(s)	34, 164, 360, 436, 658
BstMBI	GATC	5 cut(s)	31, 161, 357, 433, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	757
BstNI	CCWGG	2 cut(s)	214, 305
BstNSI	RCATGY	2 cut(s)	119, 522
BstSCI	CCNGG	4 cut(s)	124, 212, 303, 425
BstSFI	CTRYAG	1 cut(s)	546
BstSLI	GKGCMC	1 cut(s)	131
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	532
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	232, 259, 435
BtsI	GCAGTG	1 cut(s)	547
BtsIMutI	CAGTG	2 cut(s)	547, 795
Cac8I	GCNNGC	2 cut(s)	113, 117
CfoI	GCGC	2 cut(s)	113, 115
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	4 cut(s)	60, 423, 459, 703
CpoI	CGGWCCG	1 cut(s)	60
CseI	GACGC	1 cut(s)	69
CsiI	ACCWGGT	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	205
CspI	CGGWCCG	1 cut(s)	60
CviAII	CATG	2 cut(s)	116, 519
CviJI	RGCY	7 cut(s)	69, 134, 424, 595, 622, 632, 694
CviKI_1	RGCY	7 cut(s)	69, 134, 424, 595, 622, 632, 694
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	4 cut(s)	178, 351, 484, 804
DpnI	GATC	5 cut(s)	33, 163, 359, 435, 657
DpnII	GATC	5 cut(s)	31, 161, 357, 433, 655
DraIII	CACNNNGTG	1 cut(s)	141
Eam1104I	CTCTTC	5 cut(s)	105, 264, 370, 649, 718
EarI	CTCTTC	5 cut(s)	105, 264, 370, 649, 718
EciI	GGCGGA	1 cut(s)	9
Eco47I	GGWCC	3 cut(s)	60, 459, 703
Eco57I	CTGAAG	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	35
EcoO109I	RGGNCCY	2 cut(s)	423, 459
EcoRI	GAATTC	2 cut(s)	25, 605
EcoRII	CCWGG	2 cut(s)	212, 303
FaeI	CATG	2 cut(s)	119, 522
FaqI	GGGAC	2 cut(s)	239, 472
FatI	CATG	2 cut(s)	115, 518
FauI	CCCGC	1 cut(s)	216
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	2 cut(s)	67, 546
FokI	GGATG	3 cut(s)	219, 246, 442
Fsp4HI	GCNGC	2 cut(s)	67, 546
GlaI	GCGC	2 cut(s)	112, 114
GluI	GCNGC	2 cut(s)	67, 546
HaeIII	GGCC	1 cut(s)	424
HapII	CCGG	4 cut(s)	63, 125, 427, 720
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	2 cut(s)	113, 115
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	119, 522
Hin6I	GCGC	2 cut(s)	111, 113
HinP1I	GCGC	2 cut(s)	111, 113
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	5 cut(s)	55, 314, 401, 530, 800
HpaII	CCGG	4 cut(s)	63, 125, 427, 720
HphI	GGTGA	1 cut(s)	627
Hpy166II	GTNNAC	2 cut(s)	54, 144
Hpy188I	TCNGA	9 cut(s)	31, 60, 105, 268, 301, 354, 487, 505, 564
Hpy188III	TCNNGA	6 cut(s)	35, 43, 283, 338, 527, 720
Hpy8I	GTNNAC	2 cut(s)	54, 144
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	100, 465
HpyCH4III	ACNGT	2 cut(s)	602, 764
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	4 cut(s)	119, 518, 548, 795
HpyF10VI	GCNNNNNNNGC	1 cut(s)	757
HpyF3I	CTNAG	4 cut(s)	178, 351, 484, 804
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	119, 522
HspAI	GCGC	2 cut(s)	111, 113
KflI	GGGWCCC	1 cut(s)	459
Kpn2I	TCCGGA	1 cut(s)	719
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	5 cut(s)	31, 161, 357, 433, 655
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	3 cut(s)	45, 74, 691
Lsp1109I	GCAGC	1 cut(s)	532
LweI	GCATC	1 cut(s)	748
MabI	ACCWGGT	1 cut(s)	303
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	5 cut(s)	33, 163, 359, 435, 657
MboI	GATC	5 cut(s)	31, 161, 357, 433, 655
MboII	GAAGA	9 cut(s)	17, 92, 281, 288, 357, 367, 636, 735, 740
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	131, 762
MluCI	AATT	6 cut(s)	25, 172, 200, 292, 605, 676
MlyI	GAGTC	2 cut(s)	49, 323
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	6 cut(s)	27, 97, 493, 571, 581, 727
MroI	TCCGGA	1 cut(s)	719
MseI	TTAA	1 cut(s)	624
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	4 cut(s)	63, 125, 427, 720
MspR9I	CCNGG	4 cut(s)	126, 214, 305, 427
MvaI	CCWGG	2 cut(s)	214, 305
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	757
NciI	CCSGG	2 cut(s)	126, 427
NdeII	GATC	5 cut(s)	31, 161, 357, 433, 655
NlaIII	CATG	2 cut(s)	119, 522
NlaIV	GGNNCC	5 cut(s)	33, 70, 425, 460, 461
NmeAIII	GCCGAG	1 cut(s)	56
NspI	RCATGY	2 cut(s)	119, 522
PaeI	GCATGC	1 cut(s)	119
PauI	GCGCGC	1 cut(s)	111
PciSI	GCTCTTC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	343
PfeI	GAWTC	3 cut(s)	401, 530, 800
PflFI	GACNNNGTC	1 cut(s)	305
PflMI	CCANNNNNTGG	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	68, 547
PleI	GAGTC	2 cut(s)	49, 322
PpsI	GAGTC	2 cut(s)	49, 322
PpuMI	RGGWCCY	1 cut(s)	459
PsiI	TTATAA	2 cut(s)	291, 453
Psp1406I	AACGTT	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	212, 303
PspGI	CCWGG	2 cut(s)	212, 303
PspN4I	GGNNCC	5 cut(s)	33, 70, 425, 460, 461
PspPI	GGNCC	4 cut(s)	60, 423, 459, 703
PspPPI	RGGWCCY	1 cut(s)	459
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	305
PteI	GCGCGC	1 cut(s)	111
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
Rsr2I	CGGWCCG	1 cut(s)	60
RsrII	CGGWCCG	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	2 cut(s)	67, 546
Sau3AI	GATC	5 cut(s)	31, 161, 357, 433, 655
Sau96I	GGNCC	4 cut(s)	60, 423, 459, 703
SchI	GAGTC	2 cut(s)	49, 323
ScrFI	CCNGG	4 cut(s)	126, 214, 305, 427
SduI	GDGCHC	2 cut(s)	131, 762
SetI	ASST	5 cut(s)	309, 411, 485, 597, 696
SexAI	ACCWGGT	1 cut(s)	303
SfaNI	GCATC	1 cut(s)	748
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	3 cut(s)	60, 459, 703
SphI	GCATGC	1 cut(s)	119
Sse9I	AATT	6 cut(s)	25, 172, 200, 292, 605, 676
SsiI	CCGC	4 cut(s)	20, 66, 223, 396
StyD4I	CCNGG	4 cut(s)	124, 212, 303, 425
TaaI	ACNGT	2 cut(s)	602, 764
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	337
TasI	AATT	6 cut(s)	25, 172, 200, 292, 605, 676
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	3 cut(s)	401, 530, 800
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	2 cut(s)	547, 802
TseI	GCWGC	1 cut(s)	545
TspDTI	ATGAA	4 cut(s)	316, 390, 598, 763
TspRI	CASTG	2 cut(s)	547, 802
Tth111I	GACNNNGTC	1 cut(s)	305
Van91I	CCANNNNNTGG	1 cut(s)	141
VpaK11BI	GGWCC	3 cut(s)	60, 459, 703
XapI	RAATTY	4 cut(s)	25, 172, 605, 676
XceI	RCATGY	2 cut(s)	119, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.