Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002473

Physical Location & Seq

Genomic Coordinates Reverse (-)

15074899 .. 15079830

Gene Structure 4932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G126300.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGGAGAGAATATCCGGGAGAATATTCCGCTTCCAAATTCGGATCCCGAGCGCCGGCCCGAGTTGACTCGGACCATCTCCAACTCCTCGTCGTCGTCTTCGTTCTCCTTCACTACTCTTGACGCTTCCGAGGAGCTCCTGCTTTGTTGCTCGCATGCAACACTGGGTGCATCCACAGAGTGGACAAATGAAAAGCACAATTTGTATCTTGATTCTTTGGAAACATCATTTGTTAATGAATTGTACCATTCCATGCGTTTGCGTGACTGGCATCAACAAAAGAATGCTCGAGGGACACGTTCATTGCAAGAGGTCTCATTCAAGACTCAGAATTCTTCTGACCAGTTCATGGTTGTTCAAGATGGCTGCTTGCAGAAGATCAACCTTCGAAGGAATGAAAGTTTGATGGAAAGCACAGCTAATTCTCATGTTACTATGAGAAGTCCATGCAGATGTCATTCTACTCTTGCAGGCAAAAGCTGCACTGTTTCATCTCCTAAGACGCTGACTTTAAAAAAGTTACATGCATCAGCAAGAAGTTCAGAGCAGAACCTTGTATGTCATCAGGATTTGGTTGGCAGTATTACAGAAGTATCTGGTCAGAACTTCGTGGATGAAGACCATGGAGGGAAGCTAAGCAATGCATCCAAACCAAAAAGGCTTAAAAGAGTTGCAGCTGATGCTTCCAGCAATGATCAAATTGTGCCATCAGGAAATTTTGATACAAAAGAGGTTTCTATGGCCCATAATGTTCTCTCTGAACAAGGGCATAATCTTCGCTATTTCTTAGGAGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

267

Amino Acids

29.52

Weight (kDa)

6.83

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33980 AT4G33980
fragaria_vesca	FvH4_2g05920 FvH4_2g05920 FvH4_2g05920
malus_domestica	MD05G1081700.v1.1
prunus_persica	Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1
pyrus_communis	pycom05g07650
rosa_chinensis	RchiOBHm_Chr6g0257491
rosa_laevigata	RLG00000014702
rosa_multiflora	Rmu_sc0004564.1_g000004 Rmu_sc0010794.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208810
rosa_rugosa	Rorug02G0320800 Rorug05G0571600 Rorug05G0571600 Rorug05G0571600 Rorug05G0571600
rosa_samantha	Rh2CG357100 Rh2DG395200 Rh6AG089100 Rh6BG080900 Rh6CG077700 Rh6DG073300
rosa_wichuraiana	Rw2G030360 Rw6G007810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	180, 349
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	38, 51
AcsI	RAATTY	3 cut(s)	37, 331, 715
AdeI	CACNNNGTG	2 cut(s)	167, 180
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	3 cut(s)	54, 180, 349
AflIII	ACRYGT	1 cut(s)	296
AgsI	TTSAA	2 cut(s)	322, 359
AluBI	AGCT	6 cut(s)	136, 419, 480, 634, 677, 798
AluI	AGCT	6 cut(s)	136, 419, 480, 634, 677, 798
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	2 cut(s)	38, 51
Ama87I	CYCGRG	3 cut(s)	47, 59, 288
AoxI	GGCC	2 cut(s)	56, 741
ApeKI	GCWGC	3 cut(s)	366, 480, 674
ApoI	RAATTY	3 cut(s)	37, 331, 715
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	3 cut(s)	57, 72, 742
AsuC2I	CCSGG	1 cut(s)	17
AsuII	TTCGAA	1 cut(s)	388
AvaI	CYCGRG	3 cut(s)	47, 59, 288
AvaII	GGWCC	1 cut(s)	72
BaeI	ACNNNNGTAYC	2 cut(s)	576, 609
BamHI	GGATCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	2 cut(s)	90, 624
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	353, 467, 686
BccI	CCATC	4 cut(s)	83, 356, 400, 715
BcgI	CGANNNNNNTGC	2 cut(s)	758, 792
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	3 cut(s)	367, 481, 675
BlpI	GCTNAGC	1 cut(s)	635
BlsI	GCNGC	3 cut(s)	368, 482, 676
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	3 cut(s)	47, 59, 288
BmgT120I	GGNCC	3 cut(s)	57, 72, 742
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	17
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	5 cut(s)	179, 280, 536, 653, 670
BmuI	ACTGGG	1 cut(s)	173
BpiI	GAAGAC	2 cut(s)	90, 624
Bpu1102I	GCTNAGC	1 cut(s)	635
Bpu14I	TTCGAA	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	129, 622
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 180, 349
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	3 cut(s)	168, 272, 343
Bse3DI	GCAATG	3 cut(s)	302, 646, 697
BseDI	CCNNGG	2 cut(s)	129, 622
BseGI	GGATG	3 cut(s)	170, 619, 644
BseLI	CCNNNNNNNGG	3 cut(s)	54, 180, 349
BseMI	GCAATG	3 cut(s)	302, 646, 697
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	3 cut(s)	168, 272, 343
BseRI	GAGGAG	2 cut(s)	76, 146
BseXI	GCAGC	3 cut(s)	353, 467, 686
BsgI	GTGCAG	1 cut(s)	466
BshFI	GGCC	2 cut(s)	58, 743
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	3 cut(s)	47, 59, 288
BsiSI	CCGG	2 cut(s)	16, 55
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	3 cut(s)	54, 180, 349
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	58, 743
Bso31I	GGTCTC	1 cut(s)	319
BsoBI	CYCGRG	3 cut(s)	47, 59, 288
Bsp119I	TTCGAA	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	43, 378, 694
Bsp1720I	GCTNAGC	1 cut(s)	635
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	2 cut(s)	58, 743
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	38, 51
BspT104I	TTCGAA	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	319
BsrDI	GCAATG	3 cut(s)	302, 646, 697
BsrFI	RCCGGY	1 cut(s)	54
BsrI	ACTGG	3 cut(s)	168, 272, 343
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	129, 622
BssMI	GATC	3 cut(s)	43, 378, 694
BssT1I	CCWWGG	1 cut(s)	622
Bst4CI	ACNGT	1 cut(s)	487
BstAPI	GCANNNNNTGC	2 cut(s)	480, 680
BstBI	TTCGAA	1 cut(s)	388
BstC8I	GCNNGC	5 cut(s)	56, 152, 156, 371, 472
BstDEI	CTNAG	4 cut(s)	327, 498, 635, 787
BstDSI	CCRYGG	1 cut(s)	622
BstF5I	GGATG	3 cut(s)	170, 619, 644
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	3 cut(s)	46, 381, 697
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	3 cut(s)	43, 378, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	268, 480, 680
BstNSI	RCATGY	2 cut(s)	158, 527
BstSCI	CCNGG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	353, 467, 686
BstV2I	GAAGAC	2 cut(s)	90, 624
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	58, 743
BtgI	CCRYGG	1 cut(s)	622
BtsCI	GGATG	3 cut(s)	170, 619, 644
BtsIMutI	CAGTG	2 cut(s)	161, 483
Cac8I	GCNNGC	5 cut(s)	56, 152, 156, 371, 472
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	3 cut(s)	57, 72, 742
CseI	GACGC	2 cut(s)	131, 511
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	7 cut(s)	155, 253, 349, 428, 447, 524, 623
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	4 cut(s)	327, 498, 635, 787
DpnI	GATC	3 cut(s)	45, 380, 696
DpnII	GATC	3 cut(s)	43, 378, 694
DraI	TTTAAA	1 cut(s)	513
DraIII	CACNNNGTG	2 cut(s)	167, 180
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	622
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	136
Eco88I	CYCGRG	3 cut(s)	47, 59, 288
EcoICRI	GAGCTC	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	622
EcoT22I	ATGCAT	2 cut(s)	529, 646
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	622
FaeI	CATG	7 cut(s)	158, 256, 352, 431, 450, 527, 626
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	7 cut(s)	154, 252, 348, 427, 446, 523, 622
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	3 cut(s)	367, 481, 675
FokI	GGATG	3 cut(s)	157, 626, 631
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	3 cut(s)	367, 481, 675
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	3 cut(s)	367, 481, 675
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	58, 743
HapII	CCGG	2 cut(s)	16, 55
HgaI	GACGC	2 cut(s)	131, 511
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	7 cut(s)	158, 256, 352, 431, 450, 527, 626
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	3 cut(s)	67, 212, 325
HpaII	CCGG	2 cut(s)	16, 55
Hpy166II	GTNNAC	2 cut(s)	66, 183
Hpy188I	TCNGA	8 cut(s)	43, 72, 130, 330, 340, 544, 603, 760
Hpy188III	TCNNGA	7 cut(s)	47, 119, 209, 322, 359, 566, 711
Hpy8I	GTNNAC	2 cut(s)	66, 183
Hpy99I	CGWCG	2 cut(s)	94, 97
HpyAV	CCTTC	3 cut(s)	118, 384, 395
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	268, 480, 680
HpyF3I	CTNAG	4 cut(s)	327, 498, 635, 787
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	7 cut(s)	158, 256, 352, 431, 450, 527, 626
HspAI	GCGC	1 cut(s)	52
KroI	GCCGGC	1 cut(s)	54
KroNI	GCCGGC	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	3 cut(s)	43, 378, 694
LmnI	GCTCC	2 cut(s)	133, 141
Lsp1109I	GCAGC	3 cut(s)	353, 467, 686
LweI	GCATC	5 cut(s)	179, 280, 536, 653, 670
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	3 cut(s)	263, 430, 519
MalI	GATC	3 cut(s)	45, 380, 696
MboI	GATC	3 cut(s)	43, 378, 694
MboII	GAAGA	5 cut(s)	90, 327, 388, 629, 767
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	7 cut(s)	37, 199, 239, 331, 421, 699, 715
MlyI	GAGTC	2 cut(s)	61, 319
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	7 cut(s)	97, 124, 284, 304, 620, 724, 785
Mph1103I	ATGCAT	2 cut(s)	529, 646
MroNI	GCCGGC	1 cut(s)	54
MseI	TTAA	3 cut(s)	234, 512, 663
MslI	CAYNNNNRTG	1 cut(s)	451
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	2 cut(s)	16, 55
MspR9I	CCNGG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	289
MwoI	GCNNNNNNNGC	3 cut(s)	268, 480, 680
NaeI	GCCGGC	1 cut(s)	56
NciI	CCSGG	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	3 cut(s)	43, 378, 694
NgoMIV	GCCGGC	1 cut(s)	54
NlaIII	CATG	7 cut(s)	158, 256, 352, 431, 450, 527, 626
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	263
NsiI	ATGCAT	2 cut(s)	529, 646
NspI	RCATGY	2 cut(s)	158, 527
NspV	TTCGAA	1 cut(s)	388
PaeI	GCATGC	1 cut(s)	158
PaeR7I	CTCGAG	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	2 cut(s)	98, 295
PctI	GAATGC	1 cut(s)	289
PdiI	GCCGGC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	212
PflMI	CCANNNNNTGG	2 cut(s)	180, 349
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	368, 482, 676
PleI	GAGTC	2 cut(s)	61, 319
PpsI	GAGTC	2 cut(s)	61, 319
Psp124BI	GAGCTC	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	3 cut(s)	57, 72, 742
PspXI	VCTCGAGB	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	451
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	234, 512, 663
SatI	GCNGC	3 cut(s)	367, 481, 675
Sau3AI	GATC	3 cut(s)	43, 378, 694
Sau96I	GGNCC	3 cut(s)	57, 72, 742
SchI	GAGTC	2 cut(s)	61, 319
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	5 cut(s)	179, 280, 536, 653, 670
Sfr274I	CTCGAG	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	388
SinI	GGWCC	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
SphI	GCATGC	1 cut(s)	158
Sse9I	AATT	7 cut(s)	37, 199, 239, 331, 421, 699, 715
SsiI	CCGC	1 cut(s)	29
SspI	AATATT	1 cut(s)	25
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	622
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	2 cut(s)	289, 388
TasI	AATT	7 cut(s)	37, 199, 239, 331, 421, 699, 715
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	3 cut(s)	234, 512, 663
Tru9I	TTAA	3 cut(s)	234, 512, 663
TscAI	CASTG	2 cut(s)	168, 490
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	3 cut(s)	366, 480, 674
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	7 cut(s)	204, 252, 291, 337, 411, 480, 630
TspRI	CASTG	2 cut(s)	168, 490
Van91I	CCANNNNNTGG	2 cut(s)	180, 349
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	3 cut(s)	37, 331, 715
XceI	RCATGY	2 cut(s)	158, 527
XhoI	CTCGAG	1 cut(s)	288
Zsp2I	ATGCAT	2 cut(s)	529, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.