Rmu_sc0010794.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010794.1
OG0002473
Physical Location & Seq
Forward (+)
727 .. 2659
1933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010794.1_g000002.1.cds

Sequence Viewer

Length: 630 bp
atggaagagcatattcctccgccgaattcggatcccgagttcaggagcgagttgactcggaccggcggctccaactcggcgtcgtcctccttcgttgctcatcggacttgcgcgcatgcaacaccgggcacatccacagagtggacaaatgagaagcatagatcatatataaattccttagaaacatcatttgtaaataaattgtaccattccaggcatttgcgggactgccatccacaaaagtatgttcaggggattcatccatcagaagagttgcctttcaagacttataattcttctgaccaggtcagggagtccaatctgttcattgttgttcgagataggcgttctcagaagatcatctctccaaggaatgaaactctgctggaaagcaccgctgattctaacgttactatggaaaggccccggatggatcatatagtgtcttgttataaatggacccacctaagaaggaaaccgacctcagaacactcaggtgtaatcgcaagaacttcagagcagaaccctgcatgtcatcaggattcagttggcagtgctgcaggtaactctcagtctctgactaacttcccttgtccgcgcaagtttgtcccttcattttcttatacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.74

Weight (kDa)

8.62

Isoelectric Point (pI)

59.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 291, 453
Acc36I ACCTGC 1 cut(s) 551
AccB7I CCANNNNNTGG 1 cut(s) 141
AccII CGCG 2 cut(s) 113, 598
AciI CCGC 5 cut(s) 20, 66, 223, 396, 596
AclI AACGTT 1 cut(s) 408
AclWI GGATC 3 cut(s) 26, 39, 441
AcsI RAATTY 2 cut(s) 25, 172
AcuI CTGAAG 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 141
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 3 cut(s) 42, 141, 310
AgsI TTSAA 1 cut(s) 283
AjnI CCWGG 2 cut(s) 212, 303
AleI CACNNNNGTG 1 cut(s) 495
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
Alw26I GTCTC 1 cut(s) 579
AlwI GGATC 3 cut(s) 26, 39, 441
AlwNI CAGNNNCTG 1 cut(s) 577
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 1 cut(s) 422
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 2 cut(s) 25, 172
AspLEI GCGC 3 cut(s) 113, 115, 600
AspS9I GGNCC 3 cut(s) 60, 423, 459
AsuC2I CCSGG 2 cut(s) 126, 427
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 2 cut(s) 60, 459
BaeGI GKGCMC 1 cut(s) 131
BamHI GGATCC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 544
BccI CCATC 3 cut(s) 240, 271, 424
BciT130I CCWGG 2 cut(s) 214, 305
BcnI CCSGG 2 cut(s) 126, 427
BcoDI GTCTC 1 cut(s) 579
BfmI CTRYAG 1 cut(s) 558
BfuAI ACCTGC 1 cut(s) 551
BisI GCNGC 2 cut(s) 67, 558
BlsI GCNGC 2 cut(s) 68, 559
Bme1390I CCNGG 4 cut(s) 126, 214, 305, 427
Bme18I GGWCC 2 cut(s) 60, 459
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 3 cut(s) 60, 423, 459
BmiI GGNNCC 4 cut(s) 33, 70, 425, 461
BmrFI CCNGG 4 cut(s) 126, 214, 305, 427
BpuMI CCSGG 2 cut(s) 126, 427
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 368, 425
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 141, 310
Bse118I RCCGGY 1 cut(s) 62
BseBI CCWGG 2 cut(s) 214, 305
BseDI CCNNGG 2 cut(s) 368, 425
BseGI GGATG 4 cut(s) 131, 232, 259, 435
BseLI CCNNNNNNNGG 3 cut(s) 42, 141, 310
BseMII CTCAG 4 cut(s) 365, 498, 507, 584
BsePI GCGCGC 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 1 cut(s) 544
Bsh1236I CGCG 2 cut(s) 113, 598
BshFI GGCC 1 cut(s) 424
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 3 cut(s) 63, 125, 427
BslFI GGGAC 2 cut(s) 239, 593
BslI CCNNNNNNNGG 3 cut(s) 42, 141, 310
BsmAI GTCTC 1 cut(s) 579
BsmFI GGGAC 2 cut(s) 239, 593
BsnI GGCC 1 cut(s) 424
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 4 cut(s) 31, 161, 357, 433
BspACI CCGC 5 cut(s) 20, 66, 223, 396, 596
BspANI GGCC 1 cut(s) 424
BspCNI CTCAG 4 cut(s) 364, 497, 506, 583
BspFNI CGCG 2 cut(s) 113, 598
BspLI GGNNCC 4 cut(s) 33, 70, 425, 461
BspMAI CTGCAG 1 cut(s) 562
BspMI ACCTGC 1 cut(s) 551
BspPI GGATC 3 cut(s) 26, 39, 441
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 368, 425
BssHII GCGCGC 1 cut(s) 111
BssMI GATC 4 cut(s) 31, 161, 357, 433
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 368
Bst2UI CCWGG 2 cut(s) 214, 305
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 113, 117
BstDEI CTNAG 6 cut(s) 178, 351, 467, 484, 493, 570
BstF5I GGATG 4 cut(s) 131, 232, 259, 435
BstFNI CGCG 2 cut(s) 113, 598
BstHHI GCGC 3 cut(s) 113, 115, 600
BstKTI GATC 4 cut(s) 34, 164, 360, 436
BstMAI GTCTC 1 cut(s) 579
BstMBI GATC 4 cut(s) 31, 161, 357, 433
BstNI CCWGG 2 cut(s) 214, 305
BstNSI RCATGY 2 cut(s) 119, 534
BstSCI CCNGG 4 cut(s) 124, 212, 303, 425
BstSFI CTRYAG 1 cut(s) 558
BstSLI GKGCMC 1 cut(s) 131
BstUI CGCG 2 cut(s) 113, 598
BstV1I GCAGC 1 cut(s) 544
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 1 cut(s) 424
BtsCI GGATG 4 cut(s) 131, 232, 259, 435
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 1 cut(s) 559
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 2 cut(s) 113, 117
CaiI CAGNNNCTG 1 cut(s) 577
CfoI GCGC 3 cut(s) 113, 115, 600
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 3 cut(s) 60, 423, 459
CpoI CGGWCCG 1 cut(s) 60
CseI GACGC 1 cut(s) 69
CsiI ACCWGGT 1 cut(s) 303
Csp6I GTAC 1 cut(s) 205
CspI CGGWCCG 1 cut(s) 60
CviAII CATG 2 cut(s) 116, 531
CviJI RGCY 2 cut(s) 69, 424
CviKI_1 RGCY 2 cut(s) 69, 424
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 6 cut(s) 178, 351, 467, 484, 493, 570
DpnI GATC 4 cut(s) 33, 163, 359, 435
DpnII GATC 4 cut(s) 31, 161, 357, 433
DraIII CACNNNGTG 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EciI GGCGGA 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 368
Eco47I GGWCC 2 cut(s) 60, 459
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 423
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 212, 303
EcoT14I CCWWGG 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 2 cut(s) 119, 534
FaqI GGGAC 2 cut(s) 239, 593
FatI CATG 2 cut(s) 115, 530
FauI CCCGC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 67, 558
FokI GGATG 4 cut(s) 118, 219, 246, 442
Fsp4HI GCNGC 2 cut(s) 67, 558
GlaI GCGC 3 cut(s) 112, 114, 599
GluI GCNGC 2 cut(s) 67, 558
HaeIII GGCC 1 cut(s) 424
HapII CCGG 3 cut(s) 63, 125, 427
HgaI GACGC 1 cut(s) 69
HhaI GCGC 3 cut(s) 113, 115, 600
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 2 cut(s) 119, 534
Hin6I GCGC 3 cut(s) 111, 113, 598
HinP1I GCGC 3 cut(s) 111, 113, 598
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 5 cut(s) 55, 256, 314, 401, 542
HpaII CCGG 3 cut(s) 63, 125, 427
Hpy166II GTNNAC 2 cut(s) 54, 144
Hpy188I TCNGA 9 cut(s) 31, 60, 105, 268, 301, 354, 487, 517, 579
Hpy188III TCNNGA 5 cut(s) 35, 43, 283, 338, 539
Hpy8I GTNNAC 2 cut(s) 54, 144
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 3 cut(s) 100, 465, 621
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 3 cut(s) 119, 530, 560
HpyF3I CTNAG 6 cut(s) 178, 351, 467, 484, 493, 570
HpySE526I ACGT 1 cut(s) 408
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 2 cut(s) 119, 534
HspAI GCGC 3 cut(s) 111, 113, 598
Kzo9I GATC 4 cut(s) 31, 161, 357, 433
LmnI GCTCC 2 cut(s) 45, 74
Lsp1109I GCAGC 1 cut(s) 544
MabI ACCWGGT 1 cut(s) 303
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 2 cut(s) 409, 563
MalI GATC 4 cut(s) 33, 163, 359, 435
MboI GATC 4 cut(s) 31, 161, 357, 433
MboII GAAGA 4 cut(s) 17, 281, 288, 367
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 4 cut(s) 25, 172, 200, 292
MlyI GAGTC 2 cut(s) 49, 323
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 3 cut(s) 27, 97, 493
MslI CAYNNNNRTG 1 cut(s) 495
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 3 cut(s) 63, 125, 427
MspR9I CCNGG 4 cut(s) 126, 214, 305, 427
MvaI CCWGG 2 cut(s) 214, 305
MvnI CGCG 2 cut(s) 113, 598
NciI CCSGG 2 cut(s) 126, 427
NdeII GATC 4 cut(s) 31, 161, 357, 433
NlaIII CATG 2 cut(s) 119, 534
NlaIV GGNNCC 4 cut(s) 33, 70, 425, 461
NmeAIII GCCGAG 1 cut(s) 56
NspI RCATGY 2 cut(s) 119, 534
OliI CACNNNNGTG 1 cut(s) 495
PaeI GCATGC 1 cut(s) 119
PauI GCGCGC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PfeI GAWTC 3 cut(s) 256, 401, 542
PflFI GACNNNGTC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 2 cut(s) 68, 559
PleI GAGTC 2 cut(s) 49, 322
PpsI GAGTC 2 cut(s) 49, 322
PsiI TTATAA 2 cut(s) 291, 453
Psp1406I AACGTT 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 212, 303
PspGI CCWGG 2 cut(s) 212, 303
PspN4I GGNNCC 4 cut(s) 33, 70, 425, 461
PspPI GGNCC 3 cut(s) 60, 423, 459
PstI CTGCAG 1 cut(s) 562
PstNI CAGNNNCTG 1 cut(s) 577
PsuI RGATCY 1 cut(s) 31
PsyI GACNNNGTC 1 cut(s) 305
PteI GCGCGC 1 cut(s) 111
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 495
Rsr2I CGGWCCG 1 cut(s) 60
RsrII CGGWCCG 1 cut(s) 60
SatI GCNGC 2 cut(s) 67, 558
Sau3AI GATC 4 cut(s) 31, 161, 357, 433
Sau96I GGNCC 3 cut(s) 60, 423, 459
SchI GAGTC 2 cut(s) 49, 323
ScrFI CCNGG 4 cut(s) 126, 214, 305, 427
SduI GDGCHC 1 cut(s) 131
SetI ASST 6 cut(s) 309, 411, 468, 485, 499, 565
SexAI ACCWGGT 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 558
SinI GGWCC 2 cut(s) 60, 459
SmiMI CAYNNNNRTG 1 cut(s) 495
SphI GCATGC 1 cut(s) 119
Sse9I AATT 4 cut(s) 25, 172, 200, 292
SsiI CCGC 5 cut(s) 20, 66, 223, 396, 596
StyD4I CCNGG 4 cut(s) 124, 212, 303, 425
StyI CCWWGG 1 cut(s) 368
TaiI ACGT 1 cut(s) 411
TaqI TCGA 1 cut(s) 337
TasI AATT 4 cut(s) 25, 172, 200, 292
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 3 cut(s) 256, 401, 542
TscAI CASTG 1 cut(s) 559
TseI GCWGC 1 cut(s) 557
TspDTI ATGAA 4 cut(s) 248, 316, 390, 603
TspRI CASTG 1 cut(s) 559
Tth111I GACNNNGTC 1 cut(s) 305
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 2 cut(s) 60, 459
XapI RAATTY 2 cut(s) 25, 172
XceI RCATGY 2 cut(s) 119, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.