FvH4_2g07090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008704
Physical Location & Seq
Reverse (-)
5859826 .. 5864662
4837 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07090.t1

Sequence Viewer

Length: 1530 bp
ATGGAGGAAGAGAAGCAGCAACTCAAGGAAGAGAAAGCTCCTTTGCAAGAAGCAGAAGCAGAAGCAGAAGCACCGGCGGCGAACAGTGGAGGAGGATGGGGCGGAGGCTGGGGATTCTCCTCTGTTTTCTCAGATCTCCAGAAGGCAGCCGAAGAGATCTCTCGCAATGCTGCGGCGGCTGCTCAGACGGCAGCAAAGAGCATTGCCGATATGCAAACCCCGGCCGAGGACTCTGAAGAGTCTTCCAAGGAGGAGGAAGGGGATAGTGAACAGGAATGCCAAGATGAGCACGAGAAGCGACGAAAGGCTGCTCTGGAGAAACTGGAGAAAGCTATCTTATTTGCTTTGAATTTCTGCCGATCACATCTTTGCCATCTAAAGGTACTTGATAGTTCTGTGGAGAACTTTGCTTCTGGAGCATGGCAGGCTTTAGGAAGCGCTTTTAGAGGTGGCACTGAATTAGTACACAAGATTGAGCATTCTGCTGTGAACCTAGCGGAAACAATCCAGCGAGATGGTCCTGGTTCTGTTGCACCCTCATCATTGCTAGAGACCGGAAAAGCTTTTACCTCAAAGGGAATGCAAGTGCTTGAGCTAGTAGGCAAGGAAACCTTGGATCTTCTTATCACAGAAACTGGTATTGAAGTTGATAAGAATTCTAAGCACTCTGATCAAGAAGGTGAAGAGGATCAGTTATATGAGGAAGTGGGGTTTGATCGATGTTTCTACATATATGGAGGTCCAGAACACTTGGAGGAACTTGAAGCATTATCCAGCCATTATGCACTAATATTTAACCGTAGAAAAGGAAAATTATCACCAGAGCAGAAATCTGTTTATGATGGAAAGCTTAAGTTGGTTCAGCAGATTTTTAGTCTGAACTCTGAATTGGAGGGAAGTGGGCCTGAGTCGGACAAAGGCAAGAAAAAAGAGACCGGAGCTGATGGAAATAGTGATGAGATGAAGAGCTTACATGATTCAAGTGTCAGCAAAGCTGCTGATATGGCTGCTGGGTTTACAAGTGCCTTAGCTGGACTAGCTGTTAATGATATAATTCAAAGAACTACCGGCAGATTAGAGAGCCTTCACTCAGAGGGGGTTCATAGACTCTCTGAACTTTGCTGCTCTGCGGTGTCTCAACTACTGATGCTTGGTAAAGCCGTCATATCTAATGCAAACAAAGCTCAGGCTGAAGACATGGATGCTGATTTGGGGATTATTGACTGGCCTGAAGATTCTGTTGAAAAAGCAAAAATAATCAGATCAAAAGCACAAGCAATGACAGGATATGTAGAAGCGGTGTCCAGCAGTTTCATTACAGGCATATCTGATGTTGCCGAAGCTTATGTAGCAGCCATAAAGGGTGCTGCAGAATCACAAGAAGTGCTTCCACAGACATCAATGCAGGAAAAAGCAATTTCCTTCTCTGAACATCTCCGTAGTGACCAGACAACAGCTTTAAGCAAAATTCAGGACGGGCTTCACTACTTGTCTTATGTGGTGGTTTCAACCTCTATGCCTGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF719

Protein Analysis

510

Amino Acids

54.82

Weight (kDa)

4.76

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7798 PF25074 236 - 506 2.1e-138 Domain of unknown function (DUF7798)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 77, 102, 173, 176, 497, 1130, 1298
AclWI GGATC 2 cut(s) 624, 696
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 3 cut(s) 349, 655, 1467
AcuI CTGAAG 3 cut(s) 255, 1212, 1251
AfaI GTAC 2 cut(s) 384, 465
AfeI AGCGCT 1 cut(s) 439
AfiI CCNNNNNNNGG 2 cut(s) 226, 379
AflII CTTAAG 1 cut(s) 851
AgsI TTSAA 7 cut(s) 349, 644, 764, 981, 1058, 1244, 1509
AjnI CCWGG 1 cut(s) 520
AjuI GAANNNNNNNTTGG 2 cut(s) 872, 904
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 3 cut(s) 545, 926, 1140
AlwI GGATC 2 cut(s) 624, 696
AlwNI CAGNNNCTG 1 cut(s) 635
Aor51HI AGCGCT 1 cut(s) 439
AoxI GGCC 3 cut(s) 222, 902, 1226
ApoI RAATTY 3 cut(s) 349, 655, 1467
Asp700I GAANNNNTTC 1 cut(s) 1386
AspLEI GCGC 1 cut(s) 440
AspS9I GGNCC 3 cut(s) 518, 740, 902
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 692, 810
AvaII GGWCC 2 cut(s) 518, 740
BauI CACGAG 1 cut(s) 290
BbsI GAAGAC 2 cut(s) 234, 1200
Bbv12I GWGCWC 1 cut(s) 291
BccI CCATC 5 cut(s) 90, 381, 509, 836, 938
BceAI ACGGC 2 cut(s) 204, 1145
BciT130I CCWGG 1 cut(s) 522
BclI TGATCA 1 cut(s) 670
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 3 cut(s) 545, 926, 1140
BfaI CTAG 4 cut(s) 494, 548, 596, 1037
BfmI CTRYAG 1 cut(s) 1368
BfoI RGCGCY 1 cut(s) 441
BfrI CTTAAG 1 cut(s) 851
BglII AGATCT 2 cut(s) 133, 156
Bme1390I CCNGG 2 cut(s) 221, 522
Bme18I GGWCC 2 cut(s) 518, 740
BmgT120I GGNCC 3 cut(s) 518, 740, 902
BmrFI CCNGG 2 cut(s) 221, 522
BmsI GCATC 2 cut(s) 1137, 1192
BpiI GAAGAC 2 cut(s) 234, 1200
BpmI CTGGAG 4 cut(s) 122, 335, 344, 435
Bpu10I CCTNAGC 2 cut(s) 1027, 1185
BpuEI CTTGAG 2 cut(s) 8, 611
BpuMI CCSGG 1 cut(s) 221
Bsa29I ATCGAT 1 cut(s) 718
BsaI GGTCTC 2 cut(s) 545, 926
BsaJI CCNNGG 4 cut(s) 219, 225, 246, 612
BsaWI WCCGGW 2 cut(s) 554, 935
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 379
Bse118I RCCGGY 2 cut(s) 73, 1067
Bse1I ACTGG 3 cut(s) 327, 640, 1229
Bse3DI GCAATG 4 cut(s) 172, 201, 542, 1284
BseBI CCWGG 1 cut(s) 522
BseCI ATCGAT 1 cut(s) 718
BseDI CCNNGG 4 cut(s) 219, 225, 246, 612
BseGI GGATG 2 cut(s) 101, 1207
BseLI CCNNNNNNNGG 2 cut(s) 226, 379
BseMI GCAATG 4 cut(s) 172, 201, 542, 1284
BseMII CTCAG 5 cut(s) 144, 197, 897, 1104, 1199
BseNI ACTGG 3 cut(s) 327, 640, 1229
BseRI GAGGAG 3 cut(s) 105, 109, 266
BseX3I CGGCCG 1 cut(s) 222
BseYI CCCAGC 2 cut(s) 108, 1010
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 3 cut(s) 224, 904, 1228
BshVI ATCGAT 1 cut(s) 718
BsiEI CGRYCG 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 5 cut(s) 74, 221, 555, 936, 1068
BslI CCNNNNNNNGG 2 cut(s) 226, 379
BsmAI GTCTC 3 cut(s) 545, 926, 1140
BsmI GAATGC 3 cut(s) 281, 478, 585
BsnI GGCC 3 cut(s) 224, 904, 1228
Bso31I GGTCTC 2 cut(s) 545, 926
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 8 cut(s) 133, 156, 359, 616, 670, 688, 715, 1262
BspACI CCGC 7 cut(s) 77, 102, 173, 176, 497, 1130, 1298
BspANI GGCC 3 cut(s) 224, 904, 1228
BspCNI CTCAG 5 cut(s) 143, 196, 898, 1103, 1198
BspDI ATCGAT 1 cut(s) 718
BspMAI CTGCAG 1 cut(s) 1372
BspPI GGATC 2 cut(s) 624, 696
BspQI GCTCTTC 1 cut(s) 959
BspTI CTTAAG 1 cut(s) 851
BspTNI GGTCTC 2 cut(s) 545, 926
BsrDI GCAATG 4 cut(s) 172, 201, 542, 1284
BsrFI RCCGGY 2 cut(s) 73, 1067
BsrI ACTGG 3 cut(s) 327, 640, 1229
BssAI RCCGGY 2 cut(s) 73, 1067
BssECI CCNNGG 4 cut(s) 219, 225, 246, 612
BssMI GATC 8 cut(s) 133, 156, 359, 616, 670, 688, 715, 1262
BssSI CACGAG 1 cut(s) 290
BssT1I CCWWGG 2 cut(s) 246, 612
Bst2BI CACGAG 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 2 cut(s) 86, 800
Bst6I CTCTTC 6 cut(s) 3, 24, 147, 231, 678, 959
BstAFI CTTAAG 1 cut(s) 851
BstC8I GCNNGC 2 cut(s) 426, 1521
BstDEI CTNAG 7 cut(s) 130, 183, 660, 906, 1027, 1090, 1185
BstF5I GGATG 2 cut(s) 101, 1207
BstH2I RGCGCY 1 cut(s) 441
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 8 cut(s) 136, 159, 362, 619, 673, 691, 718, 1265
BstMAI GTCTC 3 cut(s) 545, 926, 1140
BstMBI GATC 8 cut(s) 133, 156, 359, 616, 670, 688, 715, 1262
BstMCI CGRYCG 1 cut(s) 225
BstNI CCWGG 1 cut(s) 522
BstSCI CCNGG 2 cut(s) 219, 520
BstSFI CTRYAG 1 cut(s) 1368
BstV2I GAAGAC 2 cut(s) 234, 1200
BstX2I RGATCY 3 cut(s) 133, 156, 616
BstXI CCANNNNNNTGG 1 cut(s) 515
BstYI RGATCY 3 cut(s) 133, 156, 616
BstZI CGGCCG 1 cut(s) 222
Bsu15I ATCGAT 1 cut(s) 718
BsuRI GGCC 3 cut(s) 224, 904, 1228
BsuTUI ATCGAT 1 cut(s) 718
BtsCI GGATG 2 cut(s) 101, 1207
BtsIMutI CAGTG 2 cut(s) 91, 453
Cac8I GCNNGC 2 cut(s) 426, 1521
CaiI CAGNNNCTG 1 cut(s) 635
CfoI GCGC 1 cut(s) 440
Cfr10I RCCGGY 2 cut(s) 73, 1067
Cfr13I GGNCC 3 cut(s) 518, 740, 902
ClaI ATCGAT 1 cut(s) 718
Csp6I GTAC 2 cut(s) 383, 464
CviAII CATG 3 cut(s) 420, 974, 1198
CviQI GTAC 2 cut(s) 383, 464
DdeI CTNAG 7 cut(s) 130, 183, 660, 906, 1027, 1090, 1185
DpnI GATC 8 cut(s) 135, 158, 361, 618, 672, 690, 717, 1264
DpnII GATC 8 cut(s) 133, 156, 359, 616, 670, 688, 715, 1262
EaeI YGGCCR 1 cut(s) 222
EagI CGGCCG 1 cut(s) 222
Eam1104I CTCTTC 6 cut(s) 3, 24, 147, 231, 678, 959
EarI CTCTTC 6 cut(s) 3, 24, 147, 231, 678, 959
EciI GGCGGA 1 cut(s) 117
EclXI CGGCCG 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 246, 612
Eco31I GGTCTC 2 cut(s) 545, 926
Eco47I GGWCC 2 cut(s) 518, 740
Eco47III AGCGCT 1 cut(s) 439
Eco52I CGGCCG 1 cut(s) 222
Eco57I CTGAAG 3 cut(s) 255, 1212, 1251
EcoRI GAATTC 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 520
EcoT14I CCWWGG 2 cut(s) 246, 612
ErhI CCWWGG 2 cut(s) 246, 612
FaeI CATG 3 cut(s) 423, 977, 1201
FalI AAGNNNNNCTT 4 cut(s) 596, 628, 1371, 1403
FatI CATG 3 cut(s) 419, 973, 1197
FbaI TGATCA 1 cut(s) 670
FokI GGATG 2 cut(s) 108, 1214
FspBI CTAG 4 cut(s) 494, 548, 596, 1037
GlaI GCGC 1 cut(s) 439
GsaI CCCAGC 2 cut(s) 112, 1014
GsuI CTGGAG 4 cut(s) 122, 335, 344, 435
HaeII RGCGCY 1 cut(s) 441
HaeIII GGCC 3 cut(s) 224, 904, 1228
HapII CCGG 5 cut(s) 74, 221, 555, 936, 1068
HhaI GCGC 1 cut(s) 440
Hin1II CATG 3 cut(s) 423, 977, 1201
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HindIII AAGCTT 3 cut(s) 561, 848, 1341
HinfI GANTC 8 cut(s) 114, 230, 239, 908, 977, 1107, 1235, 1373
HpaII CCGG 5 cut(s) 74, 221, 555, 936, 1068
HphI GGTGA 2 cut(s) 692, 810
Hpy166II GTNNAC 4 cut(s) 269, 466, 490, 1017
Hpy188III TCNNGA 6 cut(s) 139, 314, 414, 674, 743, 1472
Hpy8I GTNNAC 4 cut(s) 269, 466, 490, 1017
Hpy99I CGWCG 1 cut(s) 303
HpyAV CCTTC 5 cut(s) 136, 251, 671, 1094, 1432
HpyCH4III ACNGT 2 cut(s) 86, 800
HpyCH4V TGCA 8 cut(s) 46, 214, 533, 583, 785, 1175, 1370, 1405
HpyF3I CTNAG 7 cut(s) 130, 183, 660, 906, 1027, 1090, 1185
Hsp92II CATG 3 cut(s) 423, 977, 1201
HspAI GCGC 1 cut(s) 438
Ksp22I TGATCA 1 cut(s) 670
Kzo9I GATC 8 cut(s) 133, 156, 359, 616, 670, 688, 715, 1262
LguI GCTCTTC 1 cut(s) 959
LmnI GCTCC 3 cut(s) 43, 416, 938
LweI GCATC 2 cut(s) 1137, 1192
MaeI CTAG 4 cut(s) 494, 548, 596, 1037
MaeIII GTNAC 1 cut(s) 1442
MalI GATC 8 cut(s) 135, 158, 361, 618, 672, 690, 717, 1264
MboI GATC 8 cut(s) 133, 156, 359, 616, 670, 688, 715, 1262
MflI RGATCY 3 cut(s) 133, 156, 616
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 8 cut(s) 349, 458, 655, 812, 887, 1053, 1416, 1467
MlyI GAGTC 4 cut(s) 224, 248, 917, 1101
MmeI TCCRAC 1 cut(s) 891
MroXI GAANNNNTTC 1 cut(s) 1386
MseI TTAA 5 cut(s) 795, 852, 1044, 1460, 1528
MspCI CTTAAG 1 cut(s) 851
MspI CCGG 5 cut(s) 74, 221, 555, 936, 1068
MspR9I CCNGG 2 cut(s) 221, 522
Mva1269I GAATGC 3 cut(s) 281, 478, 585
MvaI CCWGG 1 cut(s) 522
NciI CCSGG 1 cut(s) 221
NdeII GATC 8 cut(s) 133, 156, 359, 616, 670, 688, 715, 1262
NlaIII CATG 3 cut(s) 423, 977, 1201
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 1442
PciSI GCTCTTC 1 cut(s) 959
PctI GAATGC 3 cut(s) 281, 478, 585
PdmI GAANNNNTTC 1 cut(s) 1386
PfeI GAWTC 4 cut(s) 114, 977, 1235, 1373
PleI GAGTC 4 cut(s) 224, 247, 916, 1101
PpsI GAGTC 4 cut(s) 224, 247, 916, 1101
Psp6I CCWGG 1 cut(s) 520
PspFI CCCAGC 2 cut(s) 108, 1010
PspGI CCWGG 1 cut(s) 520
PspPI GGNCC 3 cut(s) 518, 740, 902
PstI CTGCAG 1 cut(s) 1372
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 3 cut(s) 133, 156, 616
RsaI GTAC 2 cut(s) 384, 465
RsaNI GTAC 2 cut(s) 383, 464
SapI GCTCTTC 1 cut(s) 959
SaqAI TTAA 5 cut(s) 795, 852, 1044, 1460, 1528
Sau3AI GATC 8 cut(s) 133, 156, 359, 616, 670, 688, 715, 1262
Sau96I GGNCC 3 cut(s) 518, 740, 902
SchI GAGTC 4 cut(s) 224, 248, 917, 1101
ScrFI CCNGG 2 cut(s) 221, 522
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 2 cut(s) 1137, 1192
SfcI CTRYAG 1 cut(s) 1368
SgrAI CRCCGGYG 1 cut(s) 73
SinI GGWCC 2 cut(s) 518, 740
SmlI CTYRAG 3 cut(s) 23, 590, 851
SmoI CTYRAG 3 cut(s) 23, 590, 851
Sse9I AATT 8 cut(s) 349, 458, 655, 812, 887, 1053, 1416, 1467
SsiI CCGC 7 cut(s) 77, 102, 173, 176, 497, 1130, 1298
SspI AATATT 1 cut(s) 792
SspMI CTAG 4 cut(s) 494, 548, 596, 1037
StyD4I CCNGG 2 cut(s) 219, 520
StyI CCWWGG 2 cut(s) 246, 612
TaaI ACNGT 2 cut(s) 86, 800
TaqI TCGA 1 cut(s) 718
TasI AATT 8 cut(s) 349, 458, 655, 812, 887, 1053, 1416, 1467
TatI WGTACW 1 cut(s) 463
TauI GCSGC 3 cut(s) 80, 176, 179
TfiI GAWTC 4 cut(s) 114, 977, 1235, 1373
Tru1I TTAA 5 cut(s) 795, 852, 1044, 1460, 1528
Tru9I TTAA 5 cut(s) 795, 852, 1044, 1460, 1528
TscAI CASTG 2 cut(s) 91, 460
TseFI GTSAC 1 cut(s) 1442
Tsp45I GTSAC 1 cut(s) 1442
TspDTI ATGAA 3 cut(s) 977, 1091, 1303
TspGWI ACGGA 1 cut(s) 1427
TspRI CASTG 2 cut(s) 91, 460
Vha464I CTTAAG 1 cut(s) 851
VpaK11BI GGWCC 2 cut(s) 518, 740
XapI RAATTY 3 cut(s) 349, 655, 1467
XmnI GAANNNNTTC 1 cut(s) 1386
XspI CTAG 4 cut(s) 494, 548, 596, 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.