Rh6AG105700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0008704
Physical Location & Seq
Reverse (-)
15538899 .. 15542519
3621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG105700.1

Sequence Viewer

Length: 1542 bp
ATGGAGGAAGAGAAGCAGCAACTCAAGGACGAGAAAGCCCCTTTGCAACAGCAAGAAGCAAAAGCAGAAGAAAAGGCAGTAGCAGAAGCAGAAGCAGAAGCAGCGGCAGCGAAAAGTGGAGGAGGATGGGGAGGAGGCTGGGGATTCTCCTCCGTTTTCACAGATCTCCAGAAGGCAGCTGAAGAGATCTCTCGCAACGCTGCGGTGGCTGCTCAGGCAGCAGCAAAGAGCATTGCTGACATGCAAACCCCTGCCGAAGACTCTGAAGAGTCTTCCAAGGAGGAGGAAGGGGATACTGAAAAGGAAAGCCAAGATGAGCACGAGAAGCAGCGAAAGGCTGCTCTGGAGAAGTTGGAGAAAGCTAGTGAGGATTCGTTTCTCAGCCAGCATCTGAAGGTACTTGATAGTTCTGTGGAGAACTTTGCTTCAGGAGCATGGCAGGCTTTAGGAAGCGCTTTTAGAGGGGGTACCGATTTAGTTCACAAGCTTGAGCATTCTGCTGTGAACCTAGCAGAATCTATCCAGCGAGATGGTGCTGGTTCTGTTGCACCATCATTGTTAGAGACTGGAAAAGCTTTTACCTCAAAGGGAATGCAAGCGCTTGAGCTAGTAGGCAAGGAAACCTTGGATCTTCTGATTACTGAAACTGGTATTGAAGTTGATAAGAATTCTAAGCACTCTGATCAAGAAGGTGAAGAGGATCAGTTATATGAGGAAGTGGGGTTTGATCGATGTTTCTACATATATGGAGGTCCAGAACACTTGGAGGAACTTGAGGCATTGTCCAGTCATTATGCACTACTATTTAACCGGAGAAAAGGAAAACTATCACCAGAGCAGAAATCTGTTTATGATGGAAAGCTTAAGCTGGTTCAGCAGATTTTCAGTCTGAACTCTGAATTGGATGGAAGTGGGGCAGAGTCGGACAAAGGCAAAAAGAAAGAGACTGGAGCTGATGGAAATAGTGATGAGATGAAGAGCTTACATGATTCAAGTGTCAGCAAAGCTGCTGATATGGCTGCTGGGTTCACGAGTGCCTTAGCAGGACTAGCTGTTAATGATATAATTCAAAGAACTACTGGCAGATTAGAGAGCCTTCACTCGGAGGGGGTTCATAGACTCTCTGAACTTTGCTGTTCTGCGGTGTCTCAACTGCTGATGCTTGGCAAAGCCATCATATCTAATGCAAACAAAGCTCAGGCTGAAGACGTGGATGCTGATTTGGGGAATATTGACTGGCCTGAAGATTCTGTTGAAAAAGCAAAGATAATCAGATCAAAAGCACAAGCAATGTCAGGATATGTGGAAGCGGTGTCCAGCAGTTTCATTACAGGCATATCTGATGTTGCTGAAGCGTATGCAGCAGCCATAAAGGGTGCTGCAGAATCCCAAGAAGTGCTTCCACAGACATCAATGCAGGAAAAAGCAAATTCCTTCTCTGAACATCTCCGTGGCGACCAGACCATAGCTTTGAGCAAAATCCAGGACGGGCTTCATCACTTGTCTTATGTGGTGGTTTCAACCTCTATGCCTGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF719

Protein Analysis

513

Amino Acids

54.92

Weight (kDa)

4.73

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7798 PF25074 240 - 510 2.3e-139 Domain of unknown function (DUF7798)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 467
AccB1I GGYRCC 1 cut(s) 467
AciI CCGC 4 cut(s) 104, 203, 1142, 1310
AclWI GGATC 2 cut(s) 636, 708
AcsI RAATTY 2 cut(s) 667, 1429
AcuI CTGAAG 7 cut(s) 201, 285, 411, 413, 1224, 1263, 1371
AfaI GTAC 2 cut(s) 399, 469
AfeI AGCGCT 2 cut(s) 454, 600
AfiI CCNNNNNNNGG 1 cut(s) 1102
AflII CTTAAG 1 cut(s) 863
AgsI TTSAA 5 cut(s) 656, 993, 1070, 1256, 1521
AjiI CACGTC 1 cut(s) 1210
AjnI CCWGG 1 cut(s) 1482
AjuI GAANNNNNNNTTGG 4 cut(s) 884, 916, 1383, 1415
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 3 cut(s) 557, 938, 1152
AlwI GGATC 2 cut(s) 636, 708
AlwNI CAGNNNCTG 1 cut(s) 391
Aor51HI AGCGCT 2 cut(s) 454, 600
AoxI GGCC 1 cut(s) 1238
ApoI RAATTY 2 cut(s) 667, 1429
ArsI GACNNNNNNTTYG 2 cut(s) 1453, 1485
Asp700I GAANNNNTTC 1 cut(s) 1398
Asp718I GGTACC 1 cut(s) 467
AspLEI GCGC 2 cut(s) 455, 601
AspS9I GGNCC 1 cut(s) 752
AsuHPI GGTGA 2 cut(s) 704, 822
AvaII GGWCC 1 cut(s) 752
BanI GGYRCC 1 cut(s) 467
BauI CACGAG 2 cut(s) 320, 1030
BbsI GAAGAC 3 cut(s) 264, 264, 1212
Bbv12I GWGCWC 1 cut(s) 321
BccI CCATC 7 cut(s) 120, 524, 559, 848, 899, 950, 1181
BciT130I CCWGG 1 cut(s) 1484
BciVI GTATCC 1 cut(s) 286
BclI TGATCA 1 cut(s) 682
BcoDI GTCTC 3 cut(s) 557, 938, 1152
BfaI CTAG 4 cut(s) 363, 509, 608, 1049
BfmI CTRYAG 2 cut(s) 1380, 1533
BfoI RGCGCY 2 cut(s) 456, 602
BfrI CTTAAG 1 cut(s) 863
BfuI GTATCC 1 cut(s) 286
BglII AGATCT 2 cut(s) 163, 186
Bme1390I CCNGG 1 cut(s) 1484
Bme18I GGWCC 1 cut(s) 752
BmgBI CACGTC 1 cut(s) 1210
BmgT120I GGNCC 1 cut(s) 752
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 1 cut(s) 1484
BmsI GCATC 3 cut(s) 397, 1149, 1204
BpiI GAAGAC 3 cut(s) 264, 264, 1212
BpmI CTGGAG 3 cut(s) 152, 365, 969
Bpu10I CCTNAGC 3 cut(s) 213, 1039, 1197
BpuEI CTTGAG 4 cut(s) 8, 509, 623, 794
Bsa29I ATCGAT 1 cut(s) 730
BsaJI CCNNGG 3 cut(s) 276, 624, 1450
BsaWI WCCGGW 1 cut(s) 810
Bsc4I CCNNNNNNNGG 1 cut(s) 1102
Bse1I ACTGG 6 cut(s) 571, 652, 786, 952, 1084, 1241
Bse3DI GCAATG 2 cut(s) 231, 1296
BseBI CCWGG 1 cut(s) 1484
BseCI ATCGAT 1 cut(s) 730
BseDI CCNNGG 3 cut(s) 276, 624, 1450
BseGI GGATG 3 cut(s) 131, 910, 1219
BseLI CCNNNNNNNGG 1 cut(s) 1102
BseMI GCAATG 2 cut(s) 231, 1296
BseMII CTCAG 3 cut(s) 227, 394, 1211
BseNI ACTGG 6 cut(s) 571, 652, 786, 952, 1084, 1241
BseRI GAGGAG 4 cut(s) 135, 139, 147, 296
BseYI CCCAGC 2 cut(s) 138, 1022
BshFI GGCC 1 cut(s) 1240
BshNI GGYRCC 1 cut(s) 467
BshVI ATCGAT 1 cut(s) 730
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 1 cut(s) 811
BslI CCNNNNNNNGG 1 cut(s) 1102
BsmAI GTCTC 3 cut(s) 557, 938, 1152
BsmI GAATGC 2 cut(s) 493, 597
BsnI GGCC 1 cut(s) 1240
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 7 cut(s) 163, 186, 628, 682, 700, 727, 1274
BspACI CCGC 4 cut(s) 104, 203, 1142, 1310
BspANI GGCC 1 cut(s) 1240
BspCNI CTCAG 3 cut(s) 226, 393, 1210
BspDI ATCGAT 1 cut(s) 730
BspLI GGNNCC 1 cut(s) 469
BspMAI CTGCAG 2 cut(s) 1384, 1537
BspPI GGATC 2 cut(s) 636, 708
BspQI GCTCTTC 1 cut(s) 971
BspT107I GGYRCC 1 cut(s) 467
BspTI CTTAAG 1 cut(s) 863
BsrDI GCAATG 2 cut(s) 231, 1296
BsrI ACTGG 6 cut(s) 571, 652, 786, 952, 1084, 1241
BssECI CCNNGG 3 cut(s) 276, 624, 1450
BssMI GATC 7 cut(s) 163, 186, 628, 682, 700, 727, 1274
BssSI CACGAG 2 cut(s) 320, 1030
BssT1I CCWWGG 2 cut(s) 276, 624
Bst2BI CACGAG 2 cut(s) 320, 1030
Bst2UI CCWGG 1 cut(s) 1484
Bst6I CTCTTC 5 cut(s) 3, 177, 261, 690, 971
BstAFI CTTAAG 1 cut(s) 863
BstC8I GCNNGC 4 cut(s) 386, 441, 597, 1533
BstDEI CTNAG 5 cut(s) 213, 380, 672, 1039, 1197
BstDSI CCRYGG 1 cut(s) 1450
BstF5I GGATG 3 cut(s) 131, 910, 1219
BstH2I RGCGCY 2 cut(s) 456, 602
BstHHI GCGC 2 cut(s) 455, 601
BstKTI GATC 7 cut(s) 166, 189, 631, 685, 703, 730, 1277
BstMAI GTCTC 3 cut(s) 557, 938, 1152
BstMBI GATC 7 cut(s) 163, 186, 628, 682, 700, 727, 1274
BstNI CCWGG 1 cut(s) 1484
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 1482
BstSFI CTRYAG 2 cut(s) 1380, 1533
BstV2I GAAGAC 3 cut(s) 264, 264, 1212
BstX2I RGATCY 3 cut(s) 163, 186, 628
BstXI CCANNNNNNTGG 1 cut(s) 530
BstYI RGATCY 3 cut(s) 163, 186, 628
Bsu15I ATCGAT 1 cut(s) 730
BsuI GTATCC 1 cut(s) 286
BsuRI GGCC 1 cut(s) 1240
BsuTUI ATCGAT 1 cut(s) 730
BtgI CCRYGG 1 cut(s) 1450
BtrI CACGTC 1 cut(s) 1210
BtsCI GGATG 3 cut(s) 131, 910, 1219
Cac8I GCNNGC 4 cut(s) 386, 441, 597, 1533
CaiI CAGNNNCTG 1 cut(s) 391
CfoI GCGC 2 cut(s) 455, 601
Cfr13I GGNCC 1 cut(s) 752
ClaI ATCGAT 1 cut(s) 730
Csp6I GTAC 2 cut(s) 398, 468
CviAII CATG 3 cut(s) 241, 435, 986
CviQI GTAC 2 cut(s) 398, 468
DdeI CTNAG 5 cut(s) 213, 380, 672, 1039, 1197
DpnI GATC 7 cut(s) 165, 188, 630, 684, 702, 729, 1276
DpnII GATC 7 cut(s) 163, 186, 628, 682, 700, 727, 1274
Eam1104I CTCTTC 5 cut(s) 3, 177, 261, 690, 971
EarI CTCTTC 5 cut(s) 3, 177, 261, 690, 971
Eco130I CCWWGG 2 cut(s) 276, 624
Eco47I GGWCC 1 cut(s) 752
Eco47III AGCGCT 2 cut(s) 454, 600
Eco57I CTGAAG 7 cut(s) 201, 285, 411, 413, 1224, 1263, 1371
EcoRI GAATTC 1 cut(s) 667
EcoRII CCWGG 1 cut(s) 1482
EcoT14I CCWWGG 2 cut(s) 276, 624
ErhI CCWWGG 2 cut(s) 276, 624
FaeI CATG 3 cut(s) 244, 438, 989
FalI AAGNNNNNCTT 4 cut(s) 608, 640, 1383, 1415
FatI CATG 3 cut(s) 240, 434, 985
FbaI TGATCA 1 cut(s) 682
FokI GGATG 3 cut(s) 138, 917, 1226
FspBI CTAG 4 cut(s) 363, 509, 608, 1049
GlaI GCGC 2 cut(s) 454, 600
GsaI CCCAGC 2 cut(s) 142, 1026
GsuI CTGGAG 3 cut(s) 152, 365, 969
HaeII RGCGCY 2 cut(s) 456, 602
HaeIII GGCC 1 cut(s) 1240
HapII CCGG 1 cut(s) 811
HhaI GCGC 2 cut(s) 455, 601
Hin1II CATG 3 cut(s) 244, 438, 989
Hin6I GCGC 2 cut(s) 453, 599
HinP1I GCGC 2 cut(s) 453, 599
HindIII AAGCTT 3 cut(s) 485, 573, 860
HpaII CCGG 1 cut(s) 811
HphI GGTGA 2 cut(s) 704, 822
Hpy166II GTNNAC 3 cut(s) 481, 505, 1029
Hpy188III TCNNGA 7 cut(s) 169, 344, 429, 686, 755, 1030, 1296
Hpy8I GTNNAC 3 cut(s) 481, 505, 1029
HpyAV CCTTC 6 cut(s) 166, 281, 388, 683, 1106, 1444
HpyCH4IV ACGT 1 cut(s) 1209
HpyF3I CTNAG 5 cut(s) 213, 380, 672, 1039, 1197
HpySE526I ACGT 1 cut(s) 1209
Hsp92II CATG 3 cut(s) 244, 438, 989
HspAI GCGC 2 cut(s) 453, 599
KpnI GGTACC 1 cut(s) 471
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 7 cut(s) 163, 186, 628, 682, 700, 727, 1274
LguI GCTCTTC 1 cut(s) 971
LmnI GCTCC 2 cut(s) 431, 950
LweI GCATC 3 cut(s) 397, 1149, 1204
MaeI CTAG 4 cut(s) 363, 509, 608, 1049
MaeII ACGT 1 cut(s) 1209
MalI GATC 7 cut(s) 165, 188, 630, 684, 702, 729, 1276
MboI GATC 7 cut(s) 163, 186, 628, 682, 700, 727, 1274
MflI RGATCY 3 cut(s) 163, 186, 628
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 4 cut(s) 667, 899, 1065, 1429
MlyI GAGTC 4 cut(s) 254, 278, 929, 1113
MmeI TCCRAC 2 cut(s) 333, 903
MroXI GAANNNNTTC 1 cut(s) 1398
MseI TTAA 4 cut(s) 807, 864, 1056, 1540
MslI CAYNNNNRTG 1 cut(s) 1449
MspA1I CMGCKG 2 cut(s) 104, 179
MspCI CTTAAG 1 cut(s) 863
MspI CCGG 1 cut(s) 811
MspR9I CCNGG 1 cut(s) 1484
Mva1269I GAATGC 2 cut(s) 493, 597
MvaI CCWGG 1 cut(s) 1484
NdeII GATC 7 cut(s) 163, 186, 628, 682, 700, 727, 1274
NlaIII CATG 3 cut(s) 244, 438, 989
NlaIV GGNNCC 1 cut(s) 469
NspI RCATGY 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 971
PctI GAATGC 2 cut(s) 493, 597
PdmI GAANNNNTTC 1 cut(s) 1398
PfeI GAWTC 6 cut(s) 144, 371, 515, 989, 1247, 1385
PfoI TCCNGGA 1 cut(s) 1482
PleI GAGTC 4 cut(s) 254, 277, 928, 1113
PpsI GAGTC 4 cut(s) 254, 277, 928, 1113
Psp6I CCWGG 1 cut(s) 1482
PspFI CCCAGC 2 cut(s) 138, 1022
PspGI CCWGG 1 cut(s) 1482
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 1 cut(s) 752
PstI CTGCAG 2 cut(s) 1384, 1537
PstNI CAGNNNCTG 1 cut(s) 391
PsuI RGATCY 3 cut(s) 163, 186, 628
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 2 cut(s) 399, 469
RsaNI GTAC 2 cut(s) 398, 468
RseI CAYNNNNRTG 1 cut(s) 1449
SapI GCTCTTC 1 cut(s) 971
SaqAI TTAA 4 cut(s) 807, 864, 1056, 1540
Sau3AI GATC 7 cut(s) 163, 186, 628, 682, 700, 727, 1274
Sau96I GGNCC 1 cut(s) 752
SchI GAGTC 4 cut(s) 254, 278, 929, 1113
ScrFI CCNGG 1 cut(s) 1484
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 3 cut(s) 397, 1149, 1204
SfcI CTRYAG 2 cut(s) 1380, 1533
SinI GGWCC 1 cut(s) 752
SmiMI CAYNNNNRTG 1 cut(s) 1449
SmlI CTYRAG 5 cut(s) 23, 488, 602, 773, 863
SmoI CTYRAG 5 cut(s) 23, 488, 602, 773, 863
Sse9I AATT 4 cut(s) 667, 899, 1065, 1429
SsiI CCGC 4 cut(s) 104, 203, 1142, 1310
SspI AATATT 1 cut(s) 1231
SspMI CTAG 4 cut(s) 363, 509, 608, 1049
StyD4I CCNGG 1 cut(s) 1482
StyI CCWWGG 2 cut(s) 276, 624
TaiI ACGT 1 cut(s) 1212
TaqI TCGA 1 cut(s) 730
TasI AATT 4 cut(s) 667, 899, 1065, 1429
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 6 cut(s) 144, 371, 515, 989, 1247, 1385
Tru1I TTAA 4 cut(s) 807, 864, 1056, 1540
Tru9I TTAA 4 cut(s) 807, 864, 1056, 1540
TspDTI ATGAA 4 cut(s) 989, 1103, 1315, 1484
TspGWI ACGGA 2 cut(s) 142, 1439
Vha464I CTTAAG 1 cut(s) 863
VpaK11BI GGWCC 1 cut(s) 752
XapI RAATTY 2 cut(s) 667, 1429
XceI RCATGY 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 1398
XspI CTAG 4 cut(s) 363, 509, 608, 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.