Rroxscaffold_7G00206890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008704
Physical Location & Seq
Reverse (-)
56680920 .. 56684881
3962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206890.1

Sequence Viewer

Length: 1563 bp
ATGGAGGAAGAGAAGCAGCAACTCAAGGACGAGAAAGCCCCTTTGCAACAACAAGAAGCAAAAGCAGAAGAAAAGGCAGTAGCAGAAGCAGAAGCAGCGGCAGCGAAAAGTGGAGGAGGATGGGGAGGAGGCTGGGGATTCTCCTCCGTTTTCACAGATCTCCAGAAGGCAGCTGAAGAGATCTCTCGCAACGCTGCGGTGGCTGCTCAGACAGCGGCAAAGAGCATTGCCGACATGCAAATCCCTGCCGAAGACTCTGAAGAGTCTTCCAAGGAGGAGGAAGGGGATACTGAAAAGGAAAGCCAAGATGAGCACGAGAAGCAGCGAAAGGCTGCTCTGGAGAAGTTGGAGAAGGCTAGTGCGGATTCGTTTCTCAGCCAGGCAAGTCATAAATCAAATCATAGAGGGCATCTGAAGGTACTTGATAGTTCTGTGGAGAACTTTGCTTCAGGAGCATGGCAGGCTTTAGGAAGCGCTTTTAGAGGGGGTACCGATTTAGTTCACAAGCTTGAGCATTCTGCTGTGAACCTAGCAGAATCTATCCAGCGAGATGGTGCTGGTTCTGTTGCACCATCATTGTTAGAGACTGGAAAAGCTTTTACCTCAAAGGGAATGCAAGCGCTCGAGCTAGTAGGCAAGGAAACCTTGGATCTTCTGATTACTGAAACTGGTATTGAAGTTGATAAGAATTCTAAGCACTCTGACCAAGAAGGTGAAGAGGATCAGTTATATGAGGAAGTGGGGTTTGATCGATGTTTCTACATATATGGAGGTCCAGAACACTTGGAGGAACTTGAGGCATTGTCCAGTCATTATGCACTACTATTTAACCGGAGAAAAGGAAAACTATCACCAGAGCAGAAATCTGTTTATGATGGAAAGCTTAAGCTGGTTCAGCAGATTTTCAGTCTGAACTCTGAATTGGATGGAAGTGGGGCAGAGTCGGACAAAGGCAAAAAGAAAGAGACTGGAGCTGATGGAAATAGTGATGAGATGAAGAGCTTACATGATTCAAGTGTCAGCAAAGCTGCTGATATGGCTGCTGGGTTCACAAGTGCCCTAGCAGGACTAGCTGTTAATGATATAATTCAAAGAACTACTGGCAGATTAGAGAGCCTTCACTCGGAGGGGGTTCATAGACTCTCTGAACTTTGCTGTTCTGCGGTGTCTCAACTGTTGATGCTTGGTAAAGCCATCATATCTAATGCAAACAAAGCTCAGGCTGAAGATGTGGATGCTGATTTGGGGAATATTGACTGGCCTGAAGATTCTGTTGAAAAAGCAAAGATAATCAGATCAAAAGCACAAGCGATGACAGGATATGTGGAAGCGGTGTCCAGCAGTTTCATTACAGGCATATCTGATGTTGCTGAAGCGTATGCAGCAGCCATAAAGGGTGCTGCAGAATCCCAAGAAGTGCTTCCACAGACATCAATGCAGGAAAAAGCAAATTCCTTCTCTGAACATCTCCGTGGCGACCAGACCATAGCTTTGAGCAAAATCCAGGACGGGCTTCATCACTTGTCTTATGTGGTGGTTTCAACCTCTATGCCTGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF719

Protein Analysis

520

Amino Acids

55.69

Weight (kDa)

4.86

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7798 PF25074 247 - 517 1.4e-139 Domain of unknown function (DUF7798)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 488
AccB1I GGYRCC 1 cut(s) 488
AciI CCGC 6 cut(s) 98, 197, 215, 362, 1163, 1331
AclWI GGATC 2 cut(s) 657, 729
AcsI RAATTY 2 cut(s) 688, 1450
AcuI CTGAAG 7 cut(s) 195, 279, 432, 434, 1245, 1284, 1392
AfaI GTAC 2 cut(s) 420, 490
AfeI AGCGCT 2 cut(s) 475, 621
AfiI CCNNNNNNNGG 1 cut(s) 1123
AflII CTTAAG 1 cut(s) 884
AgsI TTSAA 5 cut(s) 677, 1014, 1091, 1277, 1542
AjnI CCWGG 2 cut(s) 378, 1503
AjuI GAANNNNNNNTTGG 4 cut(s) 905, 937, 1404, 1436
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 3 cut(s) 578, 959, 1173
AlwI GGATC 2 cut(s) 657, 729
Ama87I CYCGRG 1 cut(s) 623
Aor51HI AGCGCT 2 cut(s) 475, 621
AoxI GGCC 1 cut(s) 1259
ApoI RAATTY 2 cut(s) 688, 1450
ArsI GACNNNNNNTTYG 2 cut(s) 1474, 1506
Asp700I GAANNNNTTC 1 cut(s) 1419
Asp718I GGTACC 1 cut(s) 488
AspLEI GCGC 2 cut(s) 476, 622
AspS9I GGNCC 1 cut(s) 773
AsuHPI GGTGA 2 cut(s) 725, 843
AvaI CYCGRG 1 cut(s) 623
AvaII GGWCC 1 cut(s) 773
BaeGI GKGCMC 1 cut(s) 1060
BanI GGYRCC 1 cut(s) 488
BauI CACGAG 1 cut(s) 314
BbsI GAAGAC 2 cut(s) 258, 258
Bbv12I GWGCWC 1 cut(s) 315
BccI CCATC 7 cut(s) 114, 545, 580, 869, 920, 971, 1202
BciT130I CCWGG 2 cut(s) 380, 1505
BciVI GTATCC 1 cut(s) 280
BcoDI GTCTC 3 cut(s) 578, 959, 1173
BfaI CTAG 5 cut(s) 357, 530, 629, 1061, 1070
BfmI CTRYAG 2 cut(s) 1401, 1554
BfoI RGCGCY 2 cut(s) 477, 623
BfrI CTTAAG 1 cut(s) 884
BfuI GTATCC 1 cut(s) 280
BglII AGATCT 2 cut(s) 157, 180
Bme1390I CCNGG 2 cut(s) 380, 1505
Bme18I GGWCC 1 cut(s) 773
BmeT110I CYCGRG 1 cut(s) 623
BmgT120I GGNCC 1 cut(s) 773
BmiI GGNNCC 1 cut(s) 490
BmrFI CCNGG 2 cut(s) 380, 1505
BmsI GCATC 3 cut(s) 418, 1170, 1225
BpiI GAAGAC 2 cut(s) 258, 258
BpmI CTGGAG 3 cut(s) 146, 359, 990
Bpu10I CCTNAGC 1 cut(s) 1218
BpuEI CTTGAG 3 cut(s) 8, 530, 815
Bsa29I ATCGAT 1 cut(s) 751
BsaJI CCNNGG 3 cut(s) 270, 645, 1471
BsaWI WCCGGW 1 cut(s) 831
Bsc4I CCNNNNNNNGG 1 cut(s) 1123
Bse1I ACTGG 6 cut(s) 592, 673, 807, 973, 1105, 1262
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 2 cut(s) 380, 1505
BseCI ATCGAT 1 cut(s) 751
BseDI CCNNGG 3 cut(s) 270, 645, 1471
BseGI GGATG 3 cut(s) 125, 931, 1240
BseLI CCNNNNNNNGG 1 cut(s) 1123
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 3 cut(s) 221, 388, 1232
BseNI ACTGG 6 cut(s) 592, 673, 807, 973, 1105, 1262
BseRI GAGGAG 4 cut(s) 129, 133, 141, 290
BseSI GKGCMC 1 cut(s) 1060
BseYI CCCAGC 2 cut(s) 132, 1043
BshFI GGCC 1 cut(s) 1261
BshNI GGYRCC 1 cut(s) 488
BshVI ATCGAT 1 cut(s) 751
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 623
BsiSI CCGG 1 cut(s) 832
BslI CCNNNNNNNGG 1 cut(s) 1123
BsmAI GTCTC 3 cut(s) 578, 959, 1173
BsmI GAATGC 2 cut(s) 514, 618
BsnI GGCC 1 cut(s) 1261
BsoBI CYCGRG 1 cut(s) 623
Bsp1286I GDGCHC 2 cut(s) 315, 1060
Bsp143I GATC 6 cut(s) 157, 180, 649, 721, 748, 1295
BspACI CCGC 6 cut(s) 98, 197, 215, 362, 1163, 1331
BspANI GGCC 1 cut(s) 1261
BspCNI CTCAG 3 cut(s) 220, 387, 1231
BspDI ATCGAT 1 cut(s) 751
BspLI GGNNCC 1 cut(s) 490
BspMAI CTGCAG 2 cut(s) 1405, 1558
BspPI GGATC 2 cut(s) 657, 729
BspQI GCTCTTC 1 cut(s) 992
BspT107I GGYRCC 1 cut(s) 488
BspTI CTTAAG 1 cut(s) 884
BsrDI GCAATG 1 cut(s) 225
BsrI ACTGG 6 cut(s) 592, 673, 807, 973, 1105, 1262
BssECI CCNNGG 3 cut(s) 270, 645, 1471
BssMI GATC 6 cut(s) 157, 180, 649, 721, 748, 1295
BssSI CACGAG 1 cut(s) 314
BssT1I CCWWGG 2 cut(s) 270, 645
Bst2BI CACGAG 1 cut(s) 314
Bst2UI CCWGG 2 cut(s) 380, 1505
Bst4CI ACNGT 1 cut(s) 1176
Bst6I CTCTTC 5 cut(s) 3, 171, 255, 711, 992
BstAFI CTTAAG 1 cut(s) 884
BstC8I GCNNGC 3 cut(s) 462, 618, 1554
BstDEI CTNAG 4 cut(s) 207, 374, 693, 1218
BstDSI CCRYGG 1 cut(s) 1471
BstF5I GGATG 3 cut(s) 125, 931, 1240
BstH2I RGCGCY 2 cut(s) 477, 623
BstHHI GCGC 2 cut(s) 476, 622
BstKTI GATC 6 cut(s) 160, 183, 652, 724, 751, 1298
BstMAI GTCTC 3 cut(s) 578, 959, 1173
BstMBI GATC 6 cut(s) 157, 180, 649, 721, 748, 1295
BstNI CCWGG 2 cut(s) 380, 1505
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 378, 1503
BstSFI CTRYAG 2 cut(s) 1401, 1554
BstSLI GKGCMC 1 cut(s) 1060
BstV2I GAAGAC 2 cut(s) 258, 258
BstX2I RGATCY 3 cut(s) 157, 180, 649
BstXI CCANNNNNNTGG 1 cut(s) 551
BstYI RGATCY 3 cut(s) 157, 180, 649
Bsu15I ATCGAT 1 cut(s) 751
BsuI GTATCC 1 cut(s) 280
BsuRI GGCC 1 cut(s) 1261
BsuTUI ATCGAT 1 cut(s) 751
BtgI CCRYGG 1 cut(s) 1471
BtgZI GCGATG 1 cut(s) 1325
BtsCI GGATG 3 cut(s) 125, 931, 1240
Cac8I GCNNGC 3 cut(s) 462, 618, 1554
CfoI GCGC 2 cut(s) 476, 622
Cfr13I GGNCC 1 cut(s) 773
ClaI ATCGAT 1 cut(s) 751
Csp6I GTAC 2 cut(s) 419, 489
CviAII CATG 3 cut(s) 235, 456, 1007
CviQI GTAC 2 cut(s) 419, 489
DdeI CTNAG 4 cut(s) 207, 374, 693, 1218
DpnI GATC 6 cut(s) 159, 182, 651, 723, 750, 1297
DpnII GATC 6 cut(s) 157, 180, 649, 721, 748, 1295
Eam1104I CTCTTC 5 cut(s) 3, 171, 255, 711, 992
EarI CTCTTC 5 cut(s) 3, 171, 255, 711, 992
Eco130I CCWWGG 2 cut(s) 270, 645
Eco47I GGWCC 1 cut(s) 773
Eco47III AGCGCT 2 cut(s) 475, 621
Eco57I CTGAAG 7 cut(s) 195, 279, 432, 434, 1245, 1284, 1392
Eco88I CYCGRG 1 cut(s) 623
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 2 cut(s) 378, 1503
EcoT14I CCWWGG 2 cut(s) 270, 645
ErhI CCWWGG 2 cut(s) 270, 645
FaeI CATG 3 cut(s) 238, 459, 1010
FalI AAGNNNNNCTT 4 cut(s) 629, 661, 1404, 1436
FatI CATG 3 cut(s) 234, 455, 1006
FokI GGATG 3 cut(s) 132, 938, 1247
FspBI CTAG 5 cut(s) 357, 530, 629, 1061, 1070
GlaI GCGC 2 cut(s) 475, 621
GsaI CCCAGC 2 cut(s) 136, 1047
GsuI CTGGAG 3 cut(s) 146, 359, 990
HaeII RGCGCY 2 cut(s) 477, 623
HaeIII GGCC 1 cut(s) 1261
HapII CCGG 1 cut(s) 832
HhaI GCGC 2 cut(s) 476, 622
Hin1II CATG 3 cut(s) 238, 459, 1010
Hin6I GCGC 2 cut(s) 474, 620
HinP1I GCGC 2 cut(s) 474, 620
HindIII AAGCTT 3 cut(s) 506, 594, 881
HpaII CCGG 1 cut(s) 832
HphI GGTGA 2 cut(s) 725, 843
Hpy166II GTNNAC 3 cut(s) 502, 526, 1050
Hpy188III TCNNGA 4 cut(s) 163, 338, 450, 776
Hpy8I GTNNAC 3 cut(s) 502, 526, 1050
HpyAV CCTTC 7 cut(s) 160, 275, 346, 409, 704, 1127, 1465
HpyCH4III ACNGT 1 cut(s) 1176
HpyF3I CTNAG 4 cut(s) 207, 374, 693, 1218
Hsp92II CATG 3 cut(s) 238, 459, 1010
HspAI GCGC 2 cut(s) 474, 620
KpnI GGTACC 1 cut(s) 492
Kzo9I GATC 6 cut(s) 157, 180, 649, 721, 748, 1295
LguI GCTCTTC 1 cut(s) 992
LmnI GCTCC 2 cut(s) 452, 971
LweI GCATC 3 cut(s) 418, 1170, 1225
MaeI CTAG 5 cut(s) 357, 530, 629, 1061, 1070
MalI GATC 6 cut(s) 159, 182, 651, 723, 750, 1297
MboI GATC 6 cut(s) 157, 180, 649, 721, 748, 1295
MflI RGATCY 3 cut(s) 157, 180, 649
MhlI GDGCHC 2 cut(s) 315, 1060
MluCI AATT 4 cut(s) 688, 920, 1086, 1450
MlyI GAGTC 4 cut(s) 248, 272, 950, 1134
MmeI TCCRAC 2 cut(s) 327, 924
MroXI GAANNNNTTC 1 cut(s) 1419
MseI TTAA 4 cut(s) 828, 885, 1077, 1561
MslI CAYNNNNRTG 1 cut(s) 1470
MspA1I CMGCKG 3 cut(s) 98, 173, 215
MspCI CTTAAG 1 cut(s) 884
MspI CCGG 1 cut(s) 832
MspR9I CCNGG 2 cut(s) 380, 1505
Mva1269I GAATGC 2 cut(s) 514, 618
MvaI CCWGG 2 cut(s) 380, 1505
NdeII GATC 6 cut(s) 157, 180, 649, 721, 748, 1295
NlaIII CATG 3 cut(s) 238, 459, 1010
NlaIV GGNNCC 1 cut(s) 490
NspI RCATGY 1 cut(s) 238
PaeR7I CTCGAG 1 cut(s) 623
PciSI GCTCTTC 1 cut(s) 992
PctI GAATGC 2 cut(s) 514, 618
PdmI GAANNNNTTC 1 cut(s) 1419
PfeI GAWTC 6 cut(s) 138, 365, 536, 1010, 1268, 1406
PfoI TCCNGGA 1 cut(s) 1503
PleI GAGTC 4 cut(s) 248, 271, 949, 1134
PpsI GAGTC 4 cut(s) 248, 271, 949, 1134
Psp6I CCWGG 2 cut(s) 378, 1503
PspFI CCCAGC 2 cut(s) 132, 1043
PspGI CCWGG 2 cut(s) 378, 1503
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 1 cut(s) 773
PspXI VCTCGAGB 1 cut(s) 623
PstI CTGCAG 2 cut(s) 1405, 1558
PsuI RGATCY 3 cut(s) 157, 180, 649
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 420, 490
RsaNI GTAC 2 cut(s) 419, 489
RseI CAYNNNNRTG 1 cut(s) 1470
SapI GCTCTTC 1 cut(s) 992
SaqAI TTAA 4 cut(s) 828, 885, 1077, 1561
Sau3AI GATC 6 cut(s) 157, 180, 649, 721, 748, 1295
Sau96I GGNCC 1 cut(s) 773
SchI GAGTC 4 cut(s) 248, 272, 950, 1134
ScrFI CCNGG 2 cut(s) 380, 1505
SduI GDGCHC 2 cut(s) 315, 1060
SfaNI GCATC 3 cut(s) 418, 1170, 1225
SfcI CTRYAG 2 cut(s) 1401, 1554
Sfr274I CTCGAG 1 cut(s) 623
SinI GGWCC 1 cut(s) 773
SlaI CTCGAG 1 cut(s) 623
SmiMI CAYNNNNRTG 1 cut(s) 1470
SmlI CTYRAG 5 cut(s) 23, 509, 623, 794, 884
SmoI CTYRAG 5 cut(s) 23, 509, 623, 794, 884
Sse9I AATT 4 cut(s) 688, 920, 1086, 1450
SsiI CCGC 6 cut(s) 98, 197, 215, 362, 1163, 1331
SspI AATATT 1 cut(s) 1252
SspMI CTAG 5 cut(s) 357, 530, 629, 1061, 1070
StyD4I CCNGG 2 cut(s) 378, 1503
StyI CCWWGG 2 cut(s) 270, 645
TaaI ACNGT 1 cut(s) 1176
TaqI TCGA 2 cut(s) 624, 751
TasI AATT 4 cut(s) 688, 920, 1086, 1450
TauI GCSGC 2 cut(s) 101, 218
TfiI GAWTC 6 cut(s) 138, 365, 536, 1010, 1268, 1406
Tru1I TTAA 4 cut(s) 828, 885, 1077, 1561
Tru9I TTAA 4 cut(s) 828, 885, 1077, 1561
TspDTI ATGAA 4 cut(s) 1010, 1124, 1336, 1505
TspGWI ACGGA 2 cut(s) 136, 1460
Vha464I CTTAAG 1 cut(s) 884
VpaK11BI GGWCC 1 cut(s) 773
XapI RAATTY 2 cut(s) 688, 1450
XceI RCATGY 1 cut(s) 238
XhoI CTCGAG 1 cut(s) 623
XmnI GAANNNNTTC 1 cut(s) 1419
XspI CTAG 5 cut(s) 357, 530, 629, 1061, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.