RchiOBHm_Chr6g0259581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008704
Physical Location & Seq
Reverse (-)
14781036 .. 14783551
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23276

Sequence Viewer

Length: 969 bp
ATGGAGGAAGAGAAGCAGCAACTCAAGGACGAGAAAGCCCCTTTGCAACAACAAGAAGCAAAAGCAGAAGAAAAGGCAGTAGCAGAAGCAGAAGCAGCGGCAGCGAAAAGTGGAGGAGGATGGGGAGGAGGCTGGGGATTCTCCTCCGTTTTCACAGATCTCCAGAAGGCAGCTGAAGAGATCTCTCGCAACGCTGCGGCGGCTGCTCAGACAGCAGCAAAGAGCATTGCCGACATGCAAACCCCTGCCGAAGACTCTGAAGAGTCTTCCAAGGAGGAGGAAGGGGATACTGAAAAGGAAAGCCAAGATGAGCACGAGAAGCAGCGAAAGGCTGCTCTGGAGAAGTTGGAGAAAGCTAGTGAGGATTCGTTTCTCAGCCAGCATCTGAAGGTACTTGATAGTTCTGTGGAGAACTTTGCTTCAGGAGCATGGCAGGCTTTAGGAAGCGCTTTTAGAGGGGGTACCGATTTAGTTCACAAGCTTGAGCATTCTGCTGTGAACCTAGCAGAATCTATCCAGCGAGATGGTGCTGGTTCTGTTGCACCATCATTGTTAGAGACTGGAAAAGCTTTTACCTCAAAGGGAATGCAAGCGCTTGAGCTAGTAGGCAAGGAAACCTTGGATCTTCTGATTACTGAAACTGGTATTGAAGTTGATAAGAATTCTAAGCACTCTGATCAAGAAGGTGAAGAGGATCAGTTATATGAGGAAGTGGGGTTTGATCGATGTTTCTACATATATGGAGGTCCAGAACACTTGGAGGAACTTGAGGCATTGTCCAGTCATTATGCACTACTATTTAACCGGAGAAAAGGAAAACTATCACCAGAGCAGAGATCTGTTTATGATGGAAAGCTTAAGCTGGTTCAGCAGATTTTCAGTCTGAACTCTGAATTGGATGGAAGTGGGGCAGAGTCGGACAAAGGCAAAAGAAAGAGACTGGAGCCGATGGAAATAGTGATGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF719

Protein Analysis

322

Amino Acids

35.19

Weight (kDa)

4.75

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7798 PF25074 238 - 311 3.5e-36 Domain of unknown function (DUF7798)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 461
AccB1I GGYRCC 1 cut(s) 461
AciI CCGC 3 cut(s) 98, 197, 200
AclWI GGATC 2 cut(s) 630, 702
AcsI RAATTY 1 cut(s) 661
AcuI CTGAAG 4 cut(s) 195, 279, 405, 407
AfaI GTAC 2 cut(s) 393, 463
AfeI AGCGCT 2 cut(s) 448, 594
AflII CTTAAG 1 cut(s) 857
AgsI TTSAA 1 cut(s) 650
AjuI GAANNNNNNNTTGG 2 cut(s) 878, 910
AluBI AGCT 7 cut(s) 173, 356, 481, 569, 601, 856, 862
AluI AGCT 7 cut(s) 173, 356, 481, 569, 601, 856, 862
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 551, 931
AlwI GGATC 2 cut(s) 630, 702
AlwNI CAGNNNCTG 1 cut(s) 385
Aor51HI AGCGCT 2 cut(s) 448, 594
ApeKI GCWGC 9 cut(s) 16, 95, 101, 170, 194, 203, 215, 322, 332
ApoI RAATTY 1 cut(s) 661
Asp718I GGTACC 1 cut(s) 461
AspLEI GCGC 2 cut(s) 449, 595
AspS9I GGNCC 1 cut(s) 746
AsuHPI GGTGA 2 cut(s) 698, 816
AvaII GGWCC 1 cut(s) 746
BanI GGYRCC 1 cut(s) 461
BauI CACGAG 1 cut(s) 314
BbsI GAAGAC 2 cut(s) 258, 258
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 9 cut(s) 28, 107, 113, 181, 182, 190, 227, 319, 334
BccI CCATC 6 cut(s) 114, 518, 553, 842, 893, 943
BciVI GTATCC 1 cut(s) 280
BclI TGATCA 1 cut(s) 676
BcoDI GTCTC 2 cut(s) 551, 931
BfaI CTAG 3 cut(s) 357, 503, 602
BfoI RGCGCY 2 cut(s) 450, 596
BfrI CTTAAG 1 cut(s) 857
BfuI GTATCC 1 cut(s) 280
BglII AGATCT 3 cut(s) 157, 180, 836
Bme18I GGWCC 1 cut(s) 746
BmgT120I GGNCC 1 cut(s) 746
BmiI GGNNCC 2 cut(s) 463, 945
BmsI GCATC 1 cut(s) 391
BpiI GAAGAC 2 cut(s) 258, 258
BpmI CTGGAG 3 cut(s) 146, 359, 962
BpuEI CTTGAG 4 cut(s) 8, 503, 617, 788
Bsa29I ATCGAT 1 cut(s) 724
BsaJI CCNNGG 2 cut(s) 270, 618
BsaWI WCCGGW 1 cut(s) 804
Bse1I ACTGG 4 cut(s) 565, 646, 780, 945
Bse3DI GCAATG 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 724
BseDI CCNNGG 2 cut(s) 270, 618
BseGI GGATG 2 cut(s) 125, 904
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 221, 388
BseNI ACTGG 4 cut(s) 565, 646, 780, 945
BseRI GAGGAG 4 cut(s) 129, 133, 141, 290
BseXI GCAGC 9 cut(s) 28, 107, 113, 181, 182, 190, 227, 319, 334
BseYI CCCAGC 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 461
BshVI ATCGAT 1 cut(s) 724
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 805
BsmAI GTCTC 2 cut(s) 551, 931
BsmI GAATGC 2 cut(s) 487, 591
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 836
BspACI CCGC 3 cut(s) 98, 197, 200
BspCNI CTCAG 2 cut(s) 220, 387
BspDI ATCGAT 1 cut(s) 724
BspLI GGNNCC 2 cut(s) 463, 945
BspPI GGATC 2 cut(s) 630, 702
BspT107I GGYRCC 1 cut(s) 461
BspTI CTTAAG 1 cut(s) 857
BsrDI GCAATG 1 cut(s) 225
BsrI ACTGG 4 cut(s) 565, 646, 780, 945
BssECI CCNNGG 2 cut(s) 270, 618
BssMI GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 836
BssSI CACGAG 1 cut(s) 314
BssT1I CCWWGG 2 cut(s) 270, 618
Bst2BI CACGAG 1 cut(s) 314
Bst6I CTCTTC 4 cut(s) 3, 171, 255, 684
BstAFI CTTAAG 1 cut(s) 857
BstC8I GCNNGC 3 cut(s) 380, 435, 591
BstDEI CTNAG 3 cut(s) 207, 374, 666
BstF5I GGATG 2 cut(s) 125, 904
BstH2I RGCGCY 2 cut(s) 450, 596
BstHHI GCGC 2 cut(s) 449, 595
BstKTI GATC 7 cut(s) 160, 183, 625, 679, 697, 724, 839
BstMAI GTCTC 2 cut(s) 551, 931
BstMBI GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 836
BstMWI GCNNNNNNNGC 9 cut(s) 95, 101, 200, 203, 212, 319, 425, 434, 868
BstNSI RCATGY 1 cut(s) 238
BstV1I GCAGC 9 cut(s) 28, 107, 113, 181, 182, 190, 227, 319, 334
BstV2I GAAGAC 2 cut(s) 258, 258
BstX2I RGATCY 4 cut(s) 157, 180, 622, 836
BstXI CCANNNNNNTGG 1 cut(s) 524
BstYI RGATCY 4 cut(s) 157, 180, 622, 836
Bsu15I ATCGAT 1 cut(s) 724
BsuI GTATCC 1 cut(s) 280
BsuTUI ATCGAT 1 cut(s) 724
BtsCI GGATG 2 cut(s) 125, 904
Cac8I GCNNGC 3 cut(s) 380, 435, 591
CaiI CAGNNNCTG 1 cut(s) 385
CfoI GCGC 2 cut(s) 449, 595
Cfr13I GGNCC 1 cut(s) 746
ClaI ATCGAT 1 cut(s) 724
Csp6I GTAC 2 cut(s) 392, 462
CviAII CATG 2 cut(s) 235, 429
CviQI GTAC 2 cut(s) 392, 462
DdeI CTNAG 3 cut(s) 207, 374, 666
DpnI GATC 7 cut(s) 159, 182, 624, 678, 696, 723, 838
DpnII GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 836
Eam1104I CTCTTC 4 cut(s) 3, 171, 255, 684
EarI CTCTTC 4 cut(s) 3, 171, 255, 684
Eco130I CCWWGG 2 cut(s) 270, 618
Eco47I GGWCC 1 cut(s) 746
Eco47III AGCGCT 2 cut(s) 448, 594
Eco57I CTGAAG 4 cut(s) 195, 279, 405, 407
EcoRI GAATTC 1 cut(s) 661
EcoT14I CCWWGG 2 cut(s) 270, 618
ErhI CCWWGG 2 cut(s) 270, 618
FaeI CATG 2 cut(s) 238, 432
FaiI YATR 9 cut(s) 236, 430, 703, 705, 737, 739, 741, 789, 846
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FatI CATG 2 cut(s) 234, 428
FbaI TGATCA 1 cut(s) 676
FokI GGATG 2 cut(s) 132, 911
FspBI CTAG 3 cut(s) 357, 503, 602
GlaI GCGC 2 cut(s) 448, 594
GsaI CCCAGC 1 cut(s) 136
GsuI CTGGAG 3 cut(s) 146, 359, 962
HaeII RGCGCY 2 cut(s) 450, 596
HapII CCGG 1 cut(s) 805
HhaI GCGC 2 cut(s) 449, 595
Hin1II CATG 2 cut(s) 238, 432
Hin6I GCGC 2 cut(s) 447, 593
HinP1I GCGC 2 cut(s) 447, 593
HindIII AAGCTT 3 cut(s) 479, 567, 854
HinfI GANTC 6 cut(s) 138, 254, 263, 365, 509, 914
HpaII CCGG 1 cut(s) 805
HphI GGTGA 2 cut(s) 698, 816
Hpy166II GTNNAC 2 cut(s) 475, 499
Hpy188I TCNGA 8 cut(s) 210, 259, 387, 630, 676, 885, 892, 919
Hpy188III TCNNGA 5 cut(s) 163, 338, 423, 680, 749
Hpy8I GTNNAC 2 cut(s) 475, 499
HpyAV CCTTC 4 cut(s) 160, 275, 382, 677
HpyCH4V TGCA 5 cut(s) 46, 238, 542, 589, 791
HpyF10VI GCNNNNNNNGC 9 cut(s) 95, 101, 200, 203, 212, 319, 425, 434, 868
HpyF3I CTNAG 3 cut(s) 207, 374, 666
Hsp92II CATG 2 cut(s) 238, 432
HspAI GCGC 2 cut(s) 447, 593
KpnI GGTACC 1 cut(s) 465
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 836
LmnI GCTCC 2 cut(s) 425, 943
Lsp1109I GCAGC 9 cut(s) 28, 107, 113, 181, 182, 190, 227, 319, 334
LweI GCATC 1 cut(s) 391
MaeI CTAG 3 cut(s) 357, 503, 602
MalI GATC 7 cut(s) 159, 182, 624, 678, 696, 723, 838
MboI GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 836
MboII GAAGA 8 cut(s) 20, 80, 188, 258, 263, 272, 617, 701
MflI RGATCY 4 cut(s) 157, 180, 622, 836
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 2 cut(s) 661, 893
MlyI GAGTC 3 cut(s) 248, 272, 923
MmeI TCCRAC 2 cut(s) 327, 897
MseI TTAA 2 cut(s) 801, 858
MspA1I CMGCKG 2 cut(s) 98, 173
MspCI CTTAAG 1 cut(s) 857
MspI CCGG 1 cut(s) 805
Mva1269I GAATGC 2 cut(s) 487, 591
MwoI GCNNNNNNNGC 9 cut(s) 95, 101, 200, 203, 212, 319, 425, 434, 868
NdeII GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 836
NlaIII CATG 2 cut(s) 238, 432
NlaIV GGNNCC 2 cut(s) 463, 945
NspI RCATGY 1 cut(s) 238
PctI GAATGC 2 cut(s) 487, 591
PfeI GAWTC 3 cut(s) 138, 365, 509
PleI GAGTC 3 cut(s) 248, 271, 922
PpsI GAGTC 3 cut(s) 248, 271, 922
PspFI CCCAGC 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 463, 945
PspPI GGNCC 1 cut(s) 746
PstNI CAGNNNCTG 1 cut(s) 385
PsuI RGATCY 4 cut(s) 157, 180, 622, 836
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 393, 463
RsaNI GTAC 2 cut(s) 392, 462
SaqAI TTAA 2 cut(s) 801, 858
Sau3AI GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 836
Sau96I GGNCC 1 cut(s) 746
SchI GAGTC 3 cut(s) 248, 272, 923
SduI GDGCHC 1 cut(s) 315
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 1 cut(s) 746
SmlI CTYRAG 5 cut(s) 23, 482, 596, 767, 857
SmoI CTYRAG 5 cut(s) 23, 482, 596, 767, 857
Sse9I AATT 2 cut(s) 661, 893
SsiI CCGC 3 cut(s) 98, 197, 200
SspMI CTAG 3 cut(s) 357, 503, 602
StyI CCWWGG 2 cut(s) 270, 618
TaqI TCGA 1 cut(s) 724
TasI AATT 2 cut(s) 661, 893
TauI GCSGC 3 cut(s) 101, 200, 203
TfiI GAWTC 3 cut(s) 138, 365, 509
Tru1I TTAA 2 cut(s) 801, 858
Tru9I TTAA 2 cut(s) 801, 858
TseI GCWGC 9 cut(s) 16, 95, 101, 170, 194, 203, 215, 322, 332
TspGWI ACGGA 1 cut(s) 136
Vha464I CTTAAG 1 cut(s) 857
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 1 cut(s) 661
XceI RCATGY 1 cut(s) 238
XspI CTAG 3 cut(s) 357, 503, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.