pycom10g07040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0008704
Physical Location & Seq
Forward (+)
8251581 .. 8252316
736 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g07040.1

Sequence Viewer

Length: 255 bp
ATGACAGGATATGTGGAGGCAGTGTCTAGCAGTTTCGTCACAGGTATATCTGACGTTGCAGAAGCTTATCTAGCAGCCATAAAGGGCGCTTCTGAGGAATCCCGCGAAGTGCTCCCACATACATCGATCCAAGAAAAAGCAAGTTCTTTCTCTAAACACCTTCGTGATGACCAGACCACAGCTTTGAGCAAAATCCAGGATGGGCTACACTACTTGTCGTACGTTGTCATTTCAACCTCTATGCCTGCAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF719

Protein Analysis

85

Amino Acids

8.98

Weight (kDa)

5.13

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7798 PF25074 1 - 81 8.3e-32 Domain of unknown function (DUF7798)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 105
AciI CCGC 1 cut(s) 103
AclWI GGATC 1 cut(s) 121
AfaI GTAC 1 cut(s) 221
AgsI TTSAA 1 cut(s) 234
AjnI CCWGG 1 cut(s) 195
AleI CACNNNNGTG 1 cut(s) 162
AluBI AGCT 2 cut(s) 65, 182
AluI AGCT 2 cut(s) 65, 182
Alw21I GWGCWC 1 cut(s) 114
AlwI GGATC 1 cut(s) 121
ApeKI GCWGC 2 cut(s) 74, 248
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AspLEI GCGC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 197
BfaI CTAG 2 cut(s) 27, 71
BfmI CTRYAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 90
BisI GCNGC 2 cut(s) 75, 249
BlsI GCNGC 2 cut(s) 76, 250
Bme1390I CCNGG 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 197
Bsa29I ATCGAT 1 cut(s) 125
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
BseBI CCWGG 1 cut(s) 197
BseCI ATCGAT 1 cut(s) 125
BseGI GGATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 105
BshVI ATCGAT 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 114
BsiWI CGTACG 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 85
BspDI ATCGAT 1 cut(s) 125
BspFNI CGCG 1 cut(s) 105
BspMAI CTGCAG 1 cut(s) 250
BspPI GGATC 1 cut(s) 121
BssMI GATC 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 86
Bsu15I ATCGAT 1 cut(s) 125
BsuTUI ATCGAT 1 cut(s) 125
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 246
CfoI GCGC 1 cut(s) 89
ClaI ATCGAT 1 cut(s) 125
Csp6I GTAC 1 cut(s) 220
CviJI RGCY 4 cut(s) 65, 77, 182, 205
CviKI_1 RGCY 4 cut(s) 65, 77, 182, 205
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 195
FaiI YATR 5 cut(s) 12, 47, 80, 120, 242
FauI CCCGC 1 cut(s) 110
Fnu4HI GCNGC 2 cut(s) 75, 249
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 2 cut(s) 75, 249
FspBI CTAG 2 cut(s) 27, 71
GlaI GCGC 1 cut(s) 88
GluI GCNGC 2 cut(s) 75, 249
HaeII RGCGCY 1 cut(s) 90
HhaI GCGC 1 cut(s) 89
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 52, 94
Hpy188III TCNNGA 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 170
HpyCH4IV ACGT 2 cut(s) 54, 222
HpyCH4V TGCA 2 cut(s) 59, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 2 cut(s) 54, 222
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 4 cut(s) 27, 182, 185, 209
Lsp1109I GCAGC 1 cut(s) 86
MaeI CTAG 2 cut(s) 27, 71
MaeII ACGT 2 cut(s) 54, 222
MaeIII GTNAC 1 cut(s) 37
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 114
MnlI CCTC 3 cut(s) 10, 88, 247
MslI CAYNNNNRTG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 37
OliI CACNNNNGTG 1 cut(s) 162
PfeI GAWTC 1 cut(s) 98
Pfl23II CGTACG 1 cut(s) 219
PfoI TCCNGGA 1 cut(s) 195
PkrI GCNGC 2 cut(s) 76, 250
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspLI CGTACG 1 cut(s) 219
PstI CTGCAG 1 cut(s) 250
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 162
SatI GCNGC 2 cut(s) 75, 249
Sau3AI GATC 1 cut(s) 126
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 114
SetI ASST 7 cut(s) 46, 57, 67, 162, 184, 225, 239
SfcI CTRYAG 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 162
SsiI CCGC 1 cut(s) 103
SspMI CTAG 2 cut(s) 27, 71
StyD4I CCNGG 1 cut(s) 195
TaiI ACGT 2 cut(s) 57, 225
TaqI TCGA 1 cut(s) 125
TfiI GAWTC 1 cut(s) 98
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 2 cut(s) 74, 248
Tsp45I GTSAC 1 cut(s) 37
TspRI CASTG 1 cut(s) 27
XspI CTAG 2 cut(s) 27, 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.