Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000050.1

Orthogroup ID

OG0008704

Physical Location & Seq

Genomic Coordinates Forward (+)

83703 .. 87453

Gene Structure 3751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000050.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

atggaggatgagaagcagcaactcaaggacgagaaagcccctttgcaacaacaagaagcaaaagcagaagaaaaggcagtagcagaagcagaagcagaagcagcggcagcgaaaagtggaggaggatggggaggaggctggggattctcctccgttttcacagatctccagaaggcagctgaagagatctctcgcaacgctgcggtggctgctcaggcagcagcaaagagcattgctgacatgcaaacccctgccgaagactctgaagagtcttccaaggaggaggaaggggatactgaaaaggaaagccaagatgagcacgagaagcagcgaaaggctgctctggagaagttggagaaagctagtgaggattcgtttctcagccagcatctgaaggtacttgatagttctgtggagaactttgcttcaggagcatggcaggctttaggaagcgcttttagagggggtaccgatttagttcacaagcttgagcattctgctgtgaacctagcagaatctattcagcgagatggtgctggttctgttgcaccatcattgttagagactggaaaagcttttacctcaaagggaatgcaagcgcttgagctagtaggcaaggaaaccttggatcttctgattactgaaactggtattgaagttgataagaattctaagcactctgatcaagaaggtgaagaggatcagttatatgaggaagtggggtttgatcgatgtttctacatatatggaggtccagaacacttggaggaacttgaggcattgtccagtcattatgcactactatttaaccggagaaaaggaaaactatcaccagagcagaaatctgtttatgatggaaagcttaagctggttcagcagattttcagtctgaactctgaattggatggaagtggggcagagtcggacaaaggcaaaaagaaagagactggagctgatggaaatagtgatgagatgaagagcttacatgattcaagtgtcagcaaagctgctgatatggctgctgggttcacgagtgccttagcaggactagctgttaatgatataattcaaagaactactggcagattagagagccttcactcggagggggttcatagactctctgaactttgctgttctgcggtgtctcaactgctgatgcttggtaaagccatcatatctaatgcaaacaatgctcaggctgaagacgtggatactgatttggggaatattgactggcctgaagattctgttgaaaaagcaaagataatcagatcaaaagcacaagcaatgacaggatatgtggaagcggtgtccagcagtttcattacaggcatatctgatgttgctgaagcgtatgcagcagccataaagggtgctgcagaatcccaagaagtgcttccacagacatcgatgcaggaaaaagcaaattccttctctgaacatctccgtggcgaccagaccatagctttgagcaaaatccaggacgggcttcatcacttgtcttatgtggtggtttcaacctctatgcctgcagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF719

Protein Analysis

513

Amino Acids

54.94

Weight (kDa)

4.7

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15860 AT2G15860 AT2G15860 AT2G15860
fragaria_vesca	FvH4_2g07090 FvH4_2g07090
malus_domestica	MD05G1073700.v1.1 MD10G1088000.v1.1
prunus_persica	Prupe.8G114000_v2.0.a1
pyrus_communis	pycom05g06570 pycom10g07030 pycom10g07040
rosa_chinensis	RchiOBHm_Chr6g0259571 RchiOBHm_Chr6g0259581
rosa_laevigata	RLG00000014521
rosa_multiflora	Rmu_ssc0000050.1_g000018
rosa_roxburghii	Rroxscaffold_7G00206890
rosa_rugosa	Rorug05G0589700
rosa_samantha	Rh6AG105700 Rh6BG099200 Rh6CG094700 Rh6DG088800
rosa_wichuraiana	Rw6G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	467
AciI	CCGC	4 cut(s)	104, 203, 1142, 1310
AclWI	GGATC	2 cut(s)	636, 708
AcsI	RAATTY	2 cut(s)	667, 1429
AcuI	CTGAAG	7 cut(s)	201, 285, 411, 413, 1224, 1263, 1371
AfaI	GTAC	2 cut(s)	399, 469
AfeI	AGCGCT	2 cut(s)	454, 600
AfiI	CCNNNNNNNGG	1 cut(s)	1102
AflII	CTTAAG	1 cut(s)	863
AgsI	TTSAA	5 cut(s)	656, 993, 1070, 1256, 1521
AjiI	CACGTC	1 cut(s)	1210
AjnI	CCWGG	1 cut(s)	1482
AjuI	GAANNNNNNNTTGG	4 cut(s)	884, 916, 1383, 1415
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	3 cut(s)	557, 938, 1152
AlwI	GGATC	2 cut(s)	636, 708
AlwNI	CAGNNNCTG	1 cut(s)	391
Aor51HI	AGCGCT	2 cut(s)	454, 600
AoxI	GGCC	1 cut(s)	1238
ApoI	RAATTY	2 cut(s)	667, 1429
ArsI	GACNNNNNNTTYG	2 cut(s)	1453, 1485
Asp700I	GAANNNNTTC	2 cut(s)	519, 1398
Asp718I	GGTACC	1 cut(s)	467
AspLEI	GCGC	2 cut(s)	455, 601
AspS9I	GGNCC	1 cut(s)	752
AsuHPI	GGTGA	2 cut(s)	704, 822
AvaII	GGWCC	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	467
BauI	CACGAG	2 cut(s)	320, 1030
BbsI	GAAGAC	3 cut(s)	264, 264, 1212
Bbv12I	GWGCWC	1 cut(s)	321
BccI	CCATC	7 cut(s)	120, 524, 559, 848, 899, 950, 1181
BciT130I	CCWGG	1 cut(s)	1484
BciVI	GTATCC	2 cut(s)	286, 1207
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	3 cut(s)	557, 938, 1152
BfaI	CTAG	4 cut(s)	363, 509, 608, 1049
BfmI	CTRYAG	2 cut(s)	1380, 1533
BfoI	RGCGCY	2 cut(s)	456, 602
BfrI	CTTAAG	1 cut(s)	863
BfuI	GTATCC	2 cut(s)	286, 1207
BglII	AGATCT	2 cut(s)	163, 186
Bme1390I	CCNGG	1 cut(s)	1484
Bme18I	GGWCC	1 cut(s)	752
BmgBI	CACGTC	1 cut(s)	1210
BmgT120I	GGNCC	1 cut(s)	752
BmiI	GGNNCC	1 cut(s)	469
BmrFI	CCNGG	1 cut(s)	1484
BmsI	GCATC	3 cut(s)	397, 1149, 1404
BpiI	GAAGAC	3 cut(s)	264, 264, 1212
BpmI	CTGGAG	3 cut(s)	152, 365, 969
Bpu10I	CCTNAGC	3 cut(s)	213, 1039, 1197
BpuEI	CTTGAG	4 cut(s)	8, 509, 623, 794
Bsa29I	ATCGAT	2 cut(s)	730, 1412
BsaJI	CCNNGG	3 cut(s)	276, 624, 1450
BsaWI	WCCGGW	1 cut(s)	810
Bsc4I	CCNNNNNNNGG	1 cut(s)	1102
Bse1I	ACTGG	6 cut(s)	571, 652, 786, 952, 1084, 1241
Bse3DI	GCAATG	2 cut(s)	231, 1296
BseBI	CCWGG	1 cut(s)	1484
BseCI	ATCGAT	2 cut(s)	730, 1412
BseDI	CCNNGG	3 cut(s)	276, 624, 1450
BseGI	GGATG	3 cut(s)	13, 131, 910
BseLI	CCNNNNNNNGG	1 cut(s)	1102
BseMI	GCAATG	2 cut(s)	231, 1296
BseMII	CTCAG	3 cut(s)	227, 394, 1211
BseNI	ACTGG	6 cut(s)	571, 652, 786, 952, 1084, 1241
BseRI	GAGGAG	4 cut(s)	135, 139, 147, 296
BseYI	CCCAGC	2 cut(s)	138, 1022
BshFI	GGCC	1 cut(s)	1240
BshNI	GGYRCC	1 cut(s)	467
BshVI	ATCGAT	2 cut(s)	730, 1412
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	811
BslI	CCNNNNNNNGG	1 cut(s)	1102
BsmAI	GTCTC	3 cut(s)	557, 938, 1152
BsmI	GAATGC	2 cut(s)	493, 597
BsnI	GGCC	1 cut(s)	1240
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	7 cut(s)	163, 186, 628, 682, 700, 727, 1274
BspACI	CCGC	4 cut(s)	104, 203, 1142, 1310
BspANI	GGCC	1 cut(s)	1240
BspCNI	CTCAG	3 cut(s)	226, 393, 1210
BspDI	ATCGAT	2 cut(s)	730, 1412
BspLI	GGNNCC	1 cut(s)	469
BspMAI	CTGCAG	2 cut(s)	1384, 1537
BspPI	GGATC	2 cut(s)	636, 708
BspQI	GCTCTTC	1 cut(s)	971
BspT107I	GGYRCC	1 cut(s)	467
BspTI	CTTAAG	1 cut(s)	863
BsrDI	GCAATG	2 cut(s)	231, 1296
BsrI	ACTGG	6 cut(s)	571, 652, 786, 952, 1084, 1241
BssECI	CCNNGG	3 cut(s)	276, 624, 1450
BssMI	GATC	7 cut(s)	163, 186, 628, 682, 700, 727, 1274
BssSI	CACGAG	2 cut(s)	320, 1030
BssT1I	CCWWGG	2 cut(s)	276, 624
Bst2BI	CACGAG	2 cut(s)	320, 1030
Bst2UI	CCWGG	1 cut(s)	1484
Bst6I	CTCTTC	4 cut(s)	177, 261, 690, 971
BstAFI	CTTAAG	1 cut(s)	863
BstAPI	GCANNNNNTGC	1 cut(s)	1193
BstC8I	GCNNGC	4 cut(s)	386, 441, 597, 1533
BstDEI	CTNAG	5 cut(s)	213, 380, 672, 1039, 1197
BstDSI	CCRYGG	1 cut(s)	1450
BstF5I	GGATG	3 cut(s)	13, 131, 910
BstH2I	RGCGCY	2 cut(s)	456, 602
BstHHI	GCGC	2 cut(s)	455, 601
BstKTI	GATC	7 cut(s)	166, 189, 631, 685, 703, 730, 1277
BstMAI	GTCTC	3 cut(s)	557, 938, 1152
BstMBI	GATC	7 cut(s)	163, 186, 628, 682, 700, 727, 1274
BstNI	CCWGG	1 cut(s)	1484
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	1482
BstSFI	CTRYAG	2 cut(s)	1380, 1533
BstV2I	GAAGAC	3 cut(s)	264, 264, 1212
BstX2I	RGATCY	3 cut(s)	163, 186, 628
BstYI	RGATCY	3 cut(s)	163, 186, 628
Bsu15I	ATCGAT	2 cut(s)	730, 1412
BsuI	GTATCC	2 cut(s)	286, 1207
BsuRI	GGCC	1 cut(s)	1240
BsuTUI	ATCGAT	2 cut(s)	730, 1412
BtgI	CCRYGG	1 cut(s)	1450
BtrI	CACGTC	1 cut(s)	1210
BtsCI	GGATG	3 cut(s)	13, 131, 910
Cac8I	GCNNGC	4 cut(s)	386, 441, 597, 1533
CaiI	CAGNNNCTG	1 cut(s)	391
CfoI	GCGC	2 cut(s)	455, 601
Cfr13I	GGNCC	1 cut(s)	752
ClaI	ATCGAT	2 cut(s)	730, 1412
Csp6I	GTAC	2 cut(s)	398, 468
CviAII	CATG	3 cut(s)	241, 435, 986
CviQI	GTAC	2 cut(s)	398, 468
DdeI	CTNAG	5 cut(s)	213, 380, 672, 1039, 1197
DpnI	GATC	7 cut(s)	165, 188, 630, 684, 702, 729, 1276
DpnII	GATC	7 cut(s)	163, 186, 628, 682, 700, 727, 1274
Eam1104I	CTCTTC	4 cut(s)	177, 261, 690, 971
EarI	CTCTTC	4 cut(s)	177, 261, 690, 971
Eco130I	CCWWGG	2 cut(s)	276, 624
Eco47I	GGWCC	1 cut(s)	752
Eco47III	AGCGCT	2 cut(s)	454, 600
Eco57I	CTGAAG	7 cut(s)	201, 285, 411, 413, 1224, 1263, 1371
EcoRI	GAATTC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	1482
EcoT14I	CCWWGG	2 cut(s)	276, 624
ErhI	CCWWGG	2 cut(s)	276, 624
FaeI	CATG	3 cut(s)	244, 438, 989
FalI	AAGNNNNNCTT	4 cut(s)	608, 640, 1383, 1415
FatI	CATG	3 cut(s)	240, 434, 985
FbaI	TGATCA	1 cut(s)	682
FokI	GGATG	3 cut(s)	20, 138, 917
FspBI	CTAG	4 cut(s)	363, 509, 608, 1049
GlaI	GCGC	2 cut(s)	454, 600
GsaI	CCCAGC	2 cut(s)	142, 1026
GsuI	CTGGAG	3 cut(s)	152, 365, 969
HaeII	RGCGCY	2 cut(s)	456, 602
HaeIII	GGCC	1 cut(s)	1240
HapII	CCGG	1 cut(s)	811
HhaI	GCGC	2 cut(s)	455, 601
Hin1II	CATG	3 cut(s)	244, 438, 989
Hin6I	GCGC	2 cut(s)	453, 599
HinP1I	GCGC	2 cut(s)	453, 599
HindIII	AAGCTT	3 cut(s)	485, 573, 860
HpaII	CCGG	1 cut(s)	811
HphI	GGTGA	2 cut(s)	704, 822
Hpy166II	GTNNAC	3 cut(s)	481, 505, 1029
Hpy188III	TCNNGA	6 cut(s)	169, 344, 429, 686, 755, 1030
Hpy8I	GTNNAC	3 cut(s)	481, 505, 1029
HpyAV	CCTTC	6 cut(s)	166, 281, 388, 683, 1106, 1444
HpyCH4IV	ACGT	1 cut(s)	1209
HpyF3I	CTNAG	5 cut(s)	213, 380, 672, 1039, 1197
HpySE526I	ACGT	1 cut(s)	1209
Hsp92II	CATG	3 cut(s)	244, 438, 989
HspAI	GCGC	2 cut(s)	453, 599
KpnI	GGTACC	1 cut(s)	471
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	7 cut(s)	163, 186, 628, 682, 700, 727, 1274
LguI	GCTCTTC	1 cut(s)	971
LmnI	GCTCC	2 cut(s)	431, 950
LweI	GCATC	3 cut(s)	397, 1149, 1404
MaeI	CTAG	4 cut(s)	363, 509, 608, 1049
MaeII	ACGT	1 cut(s)	1209
MalI	GATC	7 cut(s)	165, 188, 630, 684, 702, 729, 1276
MboI	GATC	7 cut(s)	163, 186, 628, 682, 700, 727, 1274
MflI	RGATCY	3 cut(s)	163, 186, 628
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	4 cut(s)	667, 899, 1065, 1429
MlyI	GAGTC	4 cut(s)	254, 278, 929, 1113
MmeI	TCCRAC	2 cut(s)	333, 903
MroXI	GAANNNNTTC	2 cut(s)	519, 1398
MseI	TTAA	4 cut(s)	807, 864, 1056, 1540
MslI	CAYNNNNRTG	1 cut(s)	1449
MspA1I	CMGCKG	2 cut(s)	104, 179
MspCI	CTTAAG	1 cut(s)	863
MspI	CCGG	1 cut(s)	811
MspR9I	CCNGG	1 cut(s)	1484
Mva1269I	GAATGC	2 cut(s)	493, 597
MvaI	CCWGG	1 cut(s)	1484
NdeII	GATC	7 cut(s)	163, 186, 628, 682, 700, 727, 1274
NlaIII	CATG	3 cut(s)	244, 438, 989
NlaIV	GGNNCC	1 cut(s)	469
NspI	RCATGY	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	971
PctI	GAATGC	2 cut(s)	493, 597
PdmI	GAANNNNTTC	2 cut(s)	519, 1398
PfeI	GAWTC	6 cut(s)	144, 371, 515, 989, 1247, 1385
PfoI	TCCNGGA	1 cut(s)	1482
PleI	GAGTC	4 cut(s)	254, 277, 928, 1113
PpsI	GAGTC	4 cut(s)	254, 277, 928, 1113
Psp6I	CCWGG	1 cut(s)	1482
PspFI	CCCAGC	2 cut(s)	138, 1022
PspGI	CCWGG	1 cut(s)	1482
PspN4I	GGNNCC	1 cut(s)	469
PspPI	GGNCC	1 cut(s)	752
PstI	CTGCAG	2 cut(s)	1384, 1537
PstNI	CAGNNNCTG	1 cut(s)	391
PsuI	RGATCY	3 cut(s)	163, 186, 628
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	2 cut(s)	399, 469
RsaNI	GTAC	2 cut(s)	398, 468
RseI	CAYNNNNRTG	1 cut(s)	1449
SapI	GCTCTTC	1 cut(s)	971
SaqAI	TTAA	4 cut(s)	807, 864, 1056, 1540
Sau3AI	GATC	7 cut(s)	163, 186, 628, 682, 700, 727, 1274
Sau96I	GGNCC	1 cut(s)	752
SchI	GAGTC	4 cut(s)	254, 278, 929, 1113
ScrFI	CCNGG	1 cut(s)	1484
SduI	GDGCHC	1 cut(s)	321
SfaNI	GCATC	3 cut(s)	397, 1149, 1404
SfcI	CTRYAG	2 cut(s)	1380, 1533
SinI	GGWCC	1 cut(s)	752
SmiMI	CAYNNNNRTG	1 cut(s)	1449
SmlI	CTYRAG	5 cut(s)	23, 488, 602, 773, 863
SmoI	CTYRAG	5 cut(s)	23, 488, 602, 773, 863
Sse9I	AATT	4 cut(s)	667, 899, 1065, 1429
SsiI	CCGC	4 cut(s)	104, 203, 1142, 1310
SspI	AATATT	1 cut(s)	1231
SspMI	CTAG	4 cut(s)	363, 509, 608, 1049
StyD4I	CCNGG	1 cut(s)	1482
StyI	CCWWGG	2 cut(s)	276, 624
TaiI	ACGT	1 cut(s)	1212
TaqI	TCGA	2 cut(s)	730, 1412
TasI	AATT	4 cut(s)	667, 899, 1065, 1429
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	6 cut(s)	144, 371, 515, 989, 1247, 1385
Tru1I	TTAA	4 cut(s)	807, 864, 1056, 1540
Tru9I	TTAA	4 cut(s)	807, 864, 1056, 1540
TspDTI	ATGAA	4 cut(s)	989, 1103, 1315, 1484
TspGWI	ACGGA	2 cut(s)	142, 1439
Vha464I	CTTAAG	1 cut(s)	863
VpaK11BI	GGWCC	1 cut(s)	752
XapI	RAATTY	2 cut(s)	667, 1429
XceI	RCATGY	1 cut(s)	244
XmnI	GAANNNNTTC	2 cut(s)	519, 1398
XspI	CTAG	4 cut(s)	363, 509, 608, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.