Rh6DG088800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008704
Physical Location & Seq
Reverse (-)
10357965 .. 10361597
3633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG088800.1

Sequence Viewer

Length: 1536 bp
ATGGAGGAAGAGAAGCAGCAACTCAAGGACGAGAAAGCCCCTTTGCAACAACAAGAAGCAAAAGCAGAAGAAAAGGCAGTAGCAGAAGCAGAAGCAGCGGCAGCGAAAAGTGGAGGAGGATGGGGAGGAGGCTGGGGATTCTCCTCCGTTTTCACAGATCTCCAGAAGGCAGCTGAAGAGATCTCTCGCAACGCTGCGGTGGCTGCTCAGGCAGCAGCAAAGAGCATTGCTGACATGCAAACCCCTGCCGAAGACTCTGAAGAGTCTTCCAAGGAGGAGGAAGGGGATACTGAAAAGGAAAGCCAAGATGAGCACGAGAAGCAACGAAAGGCTGCTCTGGAGAAGTTGGAGAAAGCTAGTGAGGATTCGTTTCTCAGCCAGCATCTGAAGGTACTTGATAGTTCTGTGGAGAACTTTGCTTCAGGAGCATGGCAGGCTTTAGGAAGCGCTTTTAGAGGGGGTACCGATTTAGTTCACAAGCTTGAGCATTCTGCTGTGAACCTAGCAGAATCTATCCAGCGAGATGGTGCTGGTTCTGTTGCACCATCATTGTTAGAGACTGGAAAAGCTTTTACCTCAAAGGGAATGCAAGCGCTTGAGTTAGTAGGCAAGGAAACCTTGGATCTTCTGATTACTGAAACTGGTATTGAAGTTGATAAGAATTCTAAGCACTCTGATCAAGAAGGTGAAGAGGATCAGTTATATGAGGAAGTGGGGTTTGATCGATGTTTCTACATATATGGAGGTCCAGAACACTTGGAGGAACTTGAGGCATTGTCCAGTCATTATGCACTACTATTTAACCGGAGAAAAGGAAAACTATCACCAGAGCAGAAATCTGTTTATGATGGAAAGCTTAAGCTGGTTCAGCAGATTTTCAGTCTGAACTCTGAATTGGATGGAAGTGGGGCAGAGTCGGACAAAGGCAAAAAGAAAGAGACTGGAGCTGATGGAAATAGTGATGAGATGAAGAGCTTACATGATTCAAGTGTCAGAAAAGCTGCTGATATGGCTGCTGGGTTCACGAGTGCCTTAGCAGGACTAGCTGTTAATGATATAATTCAAAGAACTACTGGCAGATTAGAGAGCCTTCACTCGGAGGGGGTTCATAGACTCTCTGAACTTTGCTGTTCTGCGGTGTCTCAACTGCTGATGCTTGGTAAAGCCATCATATCTAATGCAAACAAAGCTCAGGCTGAAGACGTGGATGCTGATTTGGGGAATATTGACTGGCCTGAAGATTCTGTTGAAAAAGCAAAGATAATCAGATCAAAAGCACAAGCAATGACAGGATATGTGGAAGCGGTGTCCAGCAGTTTCATTACAGGCATATCTGATGTTGCTGAAGCGTATGCAGCAGCCATAAAGGGTGCTGCAGAATCCCAAGAAGTGCTTCCACAGACATCAATGCAGGAAAAAGCAAATTCCTTCTCTGAACATCTCCGTGGCGACCAGACCATAGCTTTGAGCAAAATCCAGGACGGGCTTCATCACTTGTCTTATGTGGTGGTTTCAACCTCTATGCCTGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF719

Protein Analysis

511

Amino Acids

54.8

Weight (kDa)

4.77

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7798 PF25074 238 - 508 1.8e-139 Domain of unknown function (DUF7798)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 461
AccB1I GGYRCC 1 cut(s) 461
AciI CCGC 4 cut(s) 98, 197, 1136, 1304
AclWI GGATC 2 cut(s) 630, 702
AcsI RAATTY 2 cut(s) 661, 1423
AcuI CTGAAG 7 cut(s) 195, 279, 405, 407, 1218, 1257, 1365
AfaI GTAC 2 cut(s) 393, 463
AfeI AGCGCT 2 cut(s) 448, 594
AfiI CCNNNNNNNGG 1 cut(s) 1096
AflII CTTAAG 1 cut(s) 857
AgsI TTSAA 5 cut(s) 650, 987, 1064, 1250, 1515
AjiI CACGTC 1 cut(s) 1204
AjnI CCWGG 1 cut(s) 1476
AjuI GAANNNNNNNTTGG 4 cut(s) 878, 910, 1377, 1409
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 3 cut(s) 551, 932, 1146
AlwI GGATC 2 cut(s) 630, 702
AlwNI CAGNNNCTG 1 cut(s) 385
Aor51HI AGCGCT 2 cut(s) 448, 594
AoxI GGCC 1 cut(s) 1232
ApoI RAATTY 2 cut(s) 661, 1423
ArsI GACNNNNNNTTYG 2 cut(s) 1447, 1479
Asp700I GAANNNNTTC 1 cut(s) 1392
Asp718I GGTACC 1 cut(s) 461
AspLEI GCGC 2 cut(s) 449, 595
AspS9I GGNCC 1 cut(s) 746
AsuHPI GGTGA 2 cut(s) 698, 816
AvaII GGWCC 1 cut(s) 746
BanI GGYRCC 1 cut(s) 461
BauI CACGAG 2 cut(s) 314, 1024
BbsI GAAGAC 3 cut(s) 258, 258, 1206
Bbv12I GWGCWC 1 cut(s) 315
BccI CCATC 7 cut(s) 114, 518, 553, 842, 893, 944, 1175
BciT130I CCWGG 1 cut(s) 1478
BciVI GTATCC 1 cut(s) 280
BclI TGATCA 1 cut(s) 676
BcoDI GTCTC 3 cut(s) 551, 932, 1146
BfaI CTAG 3 cut(s) 357, 503, 1043
BfmI CTRYAG 2 cut(s) 1374, 1527
BfoI RGCGCY 2 cut(s) 450, 596
BfrI CTTAAG 1 cut(s) 857
BfuI GTATCC 1 cut(s) 280
BglII AGATCT 2 cut(s) 157, 180
Bme1390I CCNGG 1 cut(s) 1478
Bme18I GGWCC 1 cut(s) 746
BmgBI CACGTC 1 cut(s) 1204
BmgT120I GGNCC 1 cut(s) 746
BmiI GGNNCC 1 cut(s) 463
BmrFI CCNGG 1 cut(s) 1478
BmsI GCATC 3 cut(s) 391, 1143, 1198
BpiI GAAGAC 3 cut(s) 258, 258, 1206
BpmI CTGGAG 3 cut(s) 146, 359, 963
Bpu10I CCTNAGC 3 cut(s) 207, 1033, 1191
BpuEI CTTGAG 4 cut(s) 8, 503, 617, 788
Bsa29I ATCGAT 1 cut(s) 724
BsaJI CCNNGG 3 cut(s) 270, 618, 1444
BsaWI WCCGGW 1 cut(s) 804
Bsc4I CCNNNNNNNGG 1 cut(s) 1096
Bse1I ACTGG 6 cut(s) 565, 646, 780, 946, 1078, 1235
Bse3DI GCAATG 2 cut(s) 225, 1290
BseBI CCWGG 1 cut(s) 1478
BseCI ATCGAT 1 cut(s) 724
BseDI CCNNGG 3 cut(s) 270, 618, 1444
BseGI GGATG 3 cut(s) 125, 904, 1213
BseLI CCNNNNNNNGG 1 cut(s) 1096
BseMI GCAATG 2 cut(s) 225, 1290
BseMII CTCAG 3 cut(s) 221, 388, 1205
BseNI ACTGG 6 cut(s) 565, 646, 780, 946, 1078, 1235
BseRI GAGGAG 4 cut(s) 129, 133, 141, 290
BseYI CCCAGC 2 cut(s) 132, 1016
BshFI GGCC 1 cut(s) 1234
BshNI GGYRCC 1 cut(s) 461
BshVI ATCGAT 1 cut(s) 724
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 805
BslI CCNNNNNNNGG 1 cut(s) 1096
BsmAI GTCTC 3 cut(s) 551, 932, 1146
BsmI GAATGC 2 cut(s) 487, 591
BsnI GGCC 1 cut(s) 1234
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 1268
BspACI CCGC 4 cut(s) 98, 197, 1136, 1304
BspANI GGCC 1 cut(s) 1234
BspCNI CTCAG 3 cut(s) 220, 387, 1204
BspDI ATCGAT 1 cut(s) 724
BspLI GGNNCC 1 cut(s) 463
BspMAI CTGCAG 2 cut(s) 1378, 1531
BspPI GGATC 2 cut(s) 630, 702
BspQI GCTCTTC 1 cut(s) 965
BspT107I GGYRCC 1 cut(s) 461
BspTI CTTAAG 1 cut(s) 857
BsrDI GCAATG 2 cut(s) 225, 1290
BsrI ACTGG 6 cut(s) 565, 646, 780, 946, 1078, 1235
BssECI CCNNGG 3 cut(s) 270, 618, 1444
BssMI GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 1268
BssSI CACGAG 2 cut(s) 314, 1024
BssT1I CCWWGG 2 cut(s) 270, 618
Bst2BI CACGAG 2 cut(s) 314, 1024
Bst2UI CCWGG 1 cut(s) 1478
Bst6I CTCTTC 5 cut(s) 3, 171, 255, 684, 965
BstAFI CTTAAG 1 cut(s) 857
BstC8I GCNNGC 4 cut(s) 380, 435, 591, 1527
BstDEI CTNAG 5 cut(s) 207, 374, 666, 1033, 1191
BstDSI CCRYGG 1 cut(s) 1444
BstF5I GGATG 3 cut(s) 125, 904, 1213
BstH2I RGCGCY 2 cut(s) 450, 596
BstHHI GCGC 2 cut(s) 449, 595
BstKTI GATC 7 cut(s) 160, 183, 625, 679, 697, 724, 1271
BstMAI GTCTC 3 cut(s) 551, 932, 1146
BstMBI GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 1268
BstNI CCWGG 1 cut(s) 1478
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 1476
BstSFI CTRYAG 2 cut(s) 1374, 1527
BstV2I GAAGAC 3 cut(s) 258, 258, 1206
BstX2I RGATCY 3 cut(s) 157, 180, 622
BstXI CCANNNNNNTGG 1 cut(s) 524
BstYI RGATCY 3 cut(s) 157, 180, 622
Bsu15I ATCGAT 1 cut(s) 724
BsuI GTATCC 1 cut(s) 280
BsuRI GGCC 1 cut(s) 1234
BsuTUI ATCGAT 1 cut(s) 724
BtgI CCRYGG 1 cut(s) 1444
BtrI CACGTC 1 cut(s) 1204
BtsCI GGATG 3 cut(s) 125, 904, 1213
Cac8I GCNNGC 4 cut(s) 380, 435, 591, 1527
CaiI CAGNNNCTG 1 cut(s) 385
CfoI GCGC 2 cut(s) 449, 595
Cfr13I GGNCC 1 cut(s) 746
ClaI ATCGAT 1 cut(s) 724
Csp6I GTAC 2 cut(s) 392, 462
CviAII CATG 3 cut(s) 235, 429, 980
CviQI GTAC 2 cut(s) 392, 462
DdeI CTNAG 5 cut(s) 207, 374, 666, 1033, 1191
DpnI GATC 7 cut(s) 159, 182, 624, 678, 696, 723, 1270
DpnII GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 1268
Eam1104I CTCTTC 5 cut(s) 3, 171, 255, 684, 965
EarI CTCTTC 5 cut(s) 3, 171, 255, 684, 965
Eco130I CCWWGG 2 cut(s) 270, 618
Eco47I GGWCC 1 cut(s) 746
Eco47III AGCGCT 2 cut(s) 448, 594
Eco57I CTGAAG 7 cut(s) 195, 279, 405, 407, 1218, 1257, 1365
EcoRI GAATTC 1 cut(s) 661
EcoRII CCWGG 1 cut(s) 1476
EcoT14I CCWWGG 2 cut(s) 270, 618
ErhI CCWWGG 2 cut(s) 270, 618
FaeI CATG 3 cut(s) 238, 432, 983
FalI AAGNNNNNCTT 4 cut(s) 602, 634, 1377, 1409
FatI CATG 3 cut(s) 234, 428, 979
FbaI TGATCA 1 cut(s) 676
FokI GGATG 3 cut(s) 132, 911, 1220
FspBI CTAG 3 cut(s) 357, 503, 1043
GlaI GCGC 2 cut(s) 448, 594
GsaI CCCAGC 2 cut(s) 136, 1020
GsuI CTGGAG 3 cut(s) 146, 359, 963
HaeII RGCGCY 2 cut(s) 450, 596
HaeIII GGCC 1 cut(s) 1234
HapII CCGG 1 cut(s) 805
HhaI GCGC 2 cut(s) 449, 595
Hin1II CATG 3 cut(s) 238, 432, 983
Hin6I GCGC 2 cut(s) 447, 593
HinP1I GCGC 2 cut(s) 447, 593
HindIII AAGCTT 3 cut(s) 479, 567, 854
HpaII CCGG 1 cut(s) 805
HphI GGTGA 2 cut(s) 698, 816
Hpy166II GTNNAC 3 cut(s) 475, 499, 1023
Hpy188III TCNNGA 6 cut(s) 163, 338, 423, 680, 749, 1024
Hpy8I GTNNAC 3 cut(s) 475, 499, 1023
HpyAV CCTTC 6 cut(s) 160, 275, 382, 677, 1100, 1438
HpyCH4IV ACGT 1 cut(s) 1203
HpyF3I CTNAG 5 cut(s) 207, 374, 666, 1033, 1191
HpySE526I ACGT 1 cut(s) 1203
Hsp92II CATG 3 cut(s) 238, 432, 983
HspAI GCGC 2 cut(s) 447, 593
KpnI GGTACC 1 cut(s) 465
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 1268
LguI GCTCTTC 1 cut(s) 965
LmnI GCTCC 2 cut(s) 425, 944
LweI GCATC 3 cut(s) 391, 1143, 1198
MaeI CTAG 3 cut(s) 357, 503, 1043
MaeII ACGT 1 cut(s) 1203
MalI GATC 7 cut(s) 159, 182, 624, 678, 696, 723, 1270
MboI GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 1268
MflI RGATCY 3 cut(s) 157, 180, 622
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 4 cut(s) 661, 893, 1059, 1423
MlyI GAGTC 4 cut(s) 248, 272, 923, 1107
MmeI TCCRAC 2 cut(s) 327, 897
MroXI GAANNNNTTC 1 cut(s) 1392
MseI TTAA 4 cut(s) 801, 858, 1050, 1534
MslI CAYNNNNRTG 1 cut(s) 1443
MspA1I CMGCKG 2 cut(s) 98, 173
MspCI CTTAAG 1 cut(s) 857
MspI CCGG 1 cut(s) 805
MspR9I CCNGG 1 cut(s) 1478
Mva1269I GAATGC 2 cut(s) 487, 591
MvaI CCWGG 1 cut(s) 1478
NdeII GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 1268
NlaIII CATG 3 cut(s) 238, 432, 983
NlaIV GGNNCC 1 cut(s) 463
NspI RCATGY 1 cut(s) 238
PciSI GCTCTTC 1 cut(s) 965
PctI GAATGC 2 cut(s) 487, 591
PdmI GAANNNNTTC 1 cut(s) 1392
PfeI GAWTC 6 cut(s) 138, 365, 509, 983, 1241, 1379
PfoI TCCNGGA 1 cut(s) 1476
PleI GAGTC 4 cut(s) 248, 271, 922, 1107
PpsI GAGTC 4 cut(s) 248, 271, 922, 1107
Psp6I CCWGG 1 cut(s) 1476
PspFI CCCAGC 2 cut(s) 132, 1016
PspGI CCWGG 1 cut(s) 1476
PspN4I GGNNCC 1 cut(s) 463
PspPI GGNCC 1 cut(s) 746
PstI CTGCAG 2 cut(s) 1378, 1531
PstNI CAGNNNCTG 1 cut(s) 385
PsuI RGATCY 3 cut(s) 157, 180, 622
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 393, 463
RsaNI GTAC 2 cut(s) 392, 462
RseI CAYNNNNRTG 1 cut(s) 1443
SapI GCTCTTC 1 cut(s) 965
SaqAI TTAA 4 cut(s) 801, 858, 1050, 1534
Sau3AI GATC 7 cut(s) 157, 180, 622, 676, 694, 721, 1268
Sau96I GGNCC 1 cut(s) 746
SchI GAGTC 4 cut(s) 248, 272, 923, 1107
ScrFI CCNGG 1 cut(s) 1478
SduI GDGCHC 1 cut(s) 315
SfaNI GCATC 3 cut(s) 391, 1143, 1198
SfcI CTRYAG 2 cut(s) 1374, 1527
SinI GGWCC 1 cut(s) 746
SmiMI CAYNNNNRTG 1 cut(s) 1443
SmlI CTYRAG 5 cut(s) 23, 482, 596, 767, 857
SmoI CTYRAG 5 cut(s) 23, 482, 596, 767, 857
Sse9I AATT 4 cut(s) 661, 893, 1059, 1423
SsiI CCGC 4 cut(s) 98, 197, 1136, 1304
SspI AATATT 1 cut(s) 1225
SspMI CTAG 3 cut(s) 357, 503, 1043
StyD4I CCNGG 1 cut(s) 1476
StyI CCWWGG 2 cut(s) 270, 618
TaiI ACGT 1 cut(s) 1206
TaqI TCGA 1 cut(s) 724
TasI AATT 4 cut(s) 661, 893, 1059, 1423
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 6 cut(s) 138, 365, 509, 983, 1241, 1379
Tru1I TTAA 4 cut(s) 801, 858, 1050, 1534
Tru9I TTAA 4 cut(s) 801, 858, 1050, 1534
TspDTI ATGAA 4 cut(s) 983, 1097, 1309, 1478
TspGWI ACGGA 2 cut(s) 136, 1433
Vha464I CTTAAG 1 cut(s) 857
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 2 cut(s) 661, 1423
XceI RCATGY 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 1392
XspI CTAG 3 cut(s) 357, 503, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.