RchiOBHm_Chr6g0259571

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008704
Physical Location & Seq
Reverse (-)
14779277 .. 14781034
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23275

Sequence Viewer

Length: 528 bp
ATGGCTGCTGGGTTCACGAGTGCCTTAGCAGGACTAGCTGTTAATGATATAATTCAAAGAACTACTGGCAGATTAGAGAGCCTTCACTCGGAGGGGGTTCATAGACTCTCTGAACTTTGCTGTTCTGCGGTATCTCAACTGCTGATGCTTGGTAAAGCCATCATATCTAATGCAAACAAAGCTCAGGCTGAAGACGTGGATGCTGATTTGGGGAATATTGACTGGCCTGAAGATTCTGTTGAAAAAGCAAAGATAATCAGATCAAAAGCACTAGCAATGACAGGATATGTGGAAGCGGTGTCCAGCAGTTTCATTACAGGCATATCTGATGTTGCTGAAGCGTATGCAGCAGCCATAAAGGGTGCTGCAGAATCCCAAGAAGTGCTTCCACAGACATCAATGCAGGAAAAAGCAAATTCCTTCTCTGAACATCTCCGCGGCGACCAGACCATAGCTTTGAGCAAAATCCAGGACGGGCTTCATCACTTGTCTTATGTGGTGGTTTCAACCTCTATGCCTGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF719

Protein Analysis

175

Amino Acids

18.43

Weight (kDa)

5.01

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7798 PF25074 1 - 172 7.2e-83 Domain of unknown function (DUF7798)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 438
AciI CCGC 4 cut(s) 128, 296, 436, 438
AcsI RAATTY 1 cut(s) 415
AcuI CTGAAG 3 cut(s) 210, 249, 357
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 3 cut(s) 56, 242, 507
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 1 cut(s) 468
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AluBI AGCT 4 cut(s) 38, 182, 455, 524
AluI AGCT 4 cut(s) 38, 182, 455, 524
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 5 cut(s) 5, 347, 350, 365, 521
ApoI RAATTY 1 cut(s) 415
ArsI GACNNNNNNTTYG 2 cut(s) 439, 471
Asp700I GAANNNNTTC 1 cut(s) 384
BauI CACGAG 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 352, 359, 362
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 470
BfaI CTAG 2 cut(s) 35, 272
BfmI CTRYAG 2 cut(s) 366, 519
BisI GCNGC 6 cut(s) 6, 348, 351, 366, 439, 522
BlsI GCNGC 6 cut(s) 7, 349, 352, 367, 440, 523
Bme1390I CCNGG 1 cut(s) 470
BmgBI CACGTC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 2 cut(s) 135, 190
BpiI GAAGAC 1 cut(s) 198
Bpu10I CCTNAGC 2 cut(s) 25, 183
BsaJI CCNNGG 1 cut(s) 436
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 2 cut(s) 70, 227
Bse3DI GCAATG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 1 cut(s) 436
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 2 cut(s) 70, 227
BseXI GCAGC 3 cut(s) 352, 359, 362
BseYI CCCAGC 1 cut(s) 8
Bsh1236I CGCG 1 cut(s) 438
BshFI GGCC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 88
BsnI GGCC 1 cut(s) 226
Bsp143I GATC 1 cut(s) 260
BspACI CCGC 4 cut(s) 128, 296, 436, 438
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 438
BspMAI CTGCAG 2 cut(s) 370, 523
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 2 cut(s) 70, 227
BssECI CCNNGG 1 cut(s) 436
BssMI GATC 1 cut(s) 260
BssSI CACGAG 1 cut(s) 16
Bst2BI CACGAG 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 2 cut(s) 25, 183
BstDSI CCRYGG 1 cut(s) 436
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 438
BstKTI GATC 1 cut(s) 263
BstMBI GATC 1 cut(s) 260
BstMWI GCNNNNNNNGC 3 cut(s) 35, 179, 347
BstNI CCWGG 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 468
BstSFI CTRYAG 2 cut(s) 366, 519
BstUI CGCG 1 cut(s) 438
BstV1I GCAGC 3 cut(s) 352, 359, 362
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 226
BtgI CCRYGG 1 cut(s) 436
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 519
Cfr42I CCGCGG 1 cut(s) 439
DdeI CTNAG 2 cut(s) 25, 183
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
Eco57I CTGAAG 3 cut(s) 210, 249, 357
EcoRII CCWGG 1 cut(s) 468
FalI AAGNNNNNCTT 2 cut(s) 369, 401
Fnu4HI GCNGC 6 cut(s) 6, 348, 351, 366, 439, 522
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 6 cut(s) 6, 348, 351, 366, 439, 522
FspBI CTAG 2 cut(s) 35, 272
GluI GCNGC 6 cut(s) 6, 348, 351, 366, 439, 522
GsaI CCCAGC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 226
HinfI GANTC 3 cut(s) 105, 233, 371
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 5 cut(s) 91, 112, 260, 328, 427
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 15
HpyAV CCTTC 2 cut(s) 92, 430
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 5 cut(s) 173, 347, 368, 403, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 179, 347
HpyF3I CTNAG 2 cut(s) 25, 183
HpySE526I ACGT 1 cut(s) 195
KspI CCGCGG 1 cut(s) 439
Kzo9I GATC 1 cut(s) 260
Lsp1109I GCAGC 3 cut(s) 352, 359, 362
LweI GCATC 2 cut(s) 135, 190
MaeI CTAG 2 cut(s) 35, 272
MaeII ACGT 1 cut(s) 195
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 2 cut(s) 203, 242
MluCI AATT 2 cut(s) 51, 415
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 2 cut(s) 85, 520
MroXI GAANNNNTTC 1 cut(s) 384
MseI TTAA 2 cut(s) 42, 526
MspA1I CMGCKG 1 cut(s) 438
MspR9I CCNGG 1 cut(s) 470
MvaI CCWGG 1 cut(s) 470
MvnI CGCG 1 cut(s) 438
MwoI GCNNNNNNNGC 3 cut(s) 35, 179, 347
NdeII GATC 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 2 cut(s) 233, 371
PfoI TCCNGGA 1 cut(s) 468
PkrI GCNGC 6 cut(s) 7, 349, 352, 367, 440, 523
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 468
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 1 cut(s) 468
PstI CTGCAG 2 cut(s) 370, 523
SacII CCGCGG 1 cut(s) 439
SaqAI TTAA 2 cut(s) 42, 526
SatI GCNGC 6 cut(s) 6, 348, 351, 366, 439, 522
Sau3AI GATC 1 cut(s) 260
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 470
SetI ASST 6 cut(s) 40, 184, 198, 457, 512, 526
SfaNI GCATC 2 cut(s) 135, 190
SfcI CTRYAG 2 cut(s) 366, 519
Sfr303I CCGCGG 1 cut(s) 439
SgrBI CCGCGG 1 cut(s) 439
Sse9I AATT 2 cut(s) 51, 415
SsiI CCGC 4 cut(s) 128, 296, 436, 438
SspI AATATT 1 cut(s) 217
SspMI CTAG 2 cut(s) 35, 272
StyD4I CCNGG 1 cut(s) 468
TaiI ACGT 1 cut(s) 198
TasI AATT 2 cut(s) 51, 415
TauI GCSGC 1 cut(s) 441
TfiI GAWTC 2 cut(s) 233, 371
Tru1I TTAA 2 cut(s) 42, 526
Tru9I TTAA 2 cut(s) 42, 526
TseI GCWGC 5 cut(s) 5, 347, 350, 365, 521
TspDTI ATGAA 3 cut(s) 89, 301, 470
XapI RAATTY 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 2 cut(s) 35, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.