Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008704

Physical Location & Seq

Genomic Coordinates Forward (+)

9091426 .. 9094079

Gene Structure 2654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g06570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCAAGTGCTTGAGCTTGTAGGAAAGGAAACTTTGGATCTGCTGATCACAGAGACTAGTATAGAAGTCAATAAGAATTCTACACTTTCTGAAAAGGAAACCAGAGAGGATCAGTTATATGAGGAAGTGGGATTTGATCGATGCTTCTACATATATGGAGGTCCAGAACAGTTGGAGGAACTGGAGGGTTTGTCCAGCCATTATGCACTATTATTTAGTCGGAGAAAAGGAAAATTGTCATCAGAACAGAAGTCTGTTTATGATGGAAAGCTTAAAGAGGTGCAACAGATTTTCAGTCTGGATATTAAGTTGGATGGAAGTGGTGCAGAGTCGGACAAAGGCAAAAAGAAAGAGACCAGAGATGATGGAAATACTGATGAGATGAAAACTCTTCATGATTCAAGCGTCAGTAAGGCTGCTGATATGGCGGCTGGGTTCACAAGTGCCTTGGCAGGACAAGCTGTTAACGATATAATTCAAAGAACCACTGGAAGATTAGAGAGTCTTCACTCAGAGGGGGTTCATAGACTGTCTGAATTGTGCTGTTCTGCTGTATCTCAACTGCTGATTCTTGGTAAATCCATCATATCTAGTGCAAACAAAACTCAGGTAGAAGATGTGGATGCTGATCTGGAGAATATTGATTGGCCTGAAGATTCTGTTGAGAAAGCAAAGATAATCAGATCAAAAGCACAAGCAATGGCAGGATATGTGGAGGCAGTGCCTAGCAGTTTCGTCACAGGTATGTCTGATGTTGCCGAAGCTTATCTAGCAGCCATAAAGGGTGCTTCTGAGGAATCCCACGAAGAGCTCTCACAGACATCGATCCAAGAAAAAGCACGTACTTTCTCTAAACATCTCCATGATGACCAGACCACAGCTTTGAGCAAAATCCAGGATGGGTTACTCTACTTGTCGTACGTTGTCATTTCGACCTCTATGCCTGCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF719

Protein Analysis

318

Amino Acids

34.72

Weight (kDa)

4.79

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15860 AT2G15860 AT2G15860 AT2G15860
fragaria_vesca	FvH4_2g07090 FvH4_2g07090
malus_domestica	MD05G1073700.v1.1 MD10G1088000.v1.1
prunus_persica	Prupe.8G114000_v2.0.a1
pyrus_communis	pycom05g06570 pycom10g07030 pycom10g07040
rosa_chinensis	RchiOBHm_Chr6g0259571 RchiOBHm_Chr6g0259581
rosa_laevigata	RLG00000014521
rosa_multiflora	Rmu_ssc0000050.1_g000018
rosa_roxburghii	Rroxscaffold_7G00206890
rosa_rugosa	Rorug05G0589700
rosa_samantha	Rh6AG105700 Rh6BG099200 Rh6CG094700 Rh6DG088800
rosa_wichuraiana	Rw6G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	428
AclWI	GGATC	3 cut(s)	45, 117, 820
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	2 cut(s)	844, 920
AgsI	TTSAA	2 cut(s)	402, 479
AhlI	ACTAGT	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	894
AluBI	AGCT	6 cut(s)	16, 271, 461, 764, 811, 881
AluI	AGCT	6 cut(s)	16, 271, 461, 764, 811, 881
Alw21I	GWGCWC	1 cut(s)	813
Alw26I	GTCTC	2 cut(s)	47, 347
AlwI	GGATC	3 cut(s)	45, 117, 820
AoxI	GGCC	1 cut(s)	647
ApeKI	GCWGC	3 cut(s)	416, 773, 947
ApoI	RAATTY	1 cut(s)	76
ArsI	GACNNNNNNTTYG	2 cut(s)	865, 897
AspS9I	GGNCC	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	813
BbsI	GAAGAC	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	813
BbvI	GCAGC	2 cut(s)	403, 785
BccI	CCATC	5 cut(s)	257, 308, 359, 590, 893
BcgI	CGANNNNNNTGC	1 cut(s)	922
BciT130I	CCWGG	1 cut(s)	896
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	47, 347
BcuI	ACTAGT	1 cut(s)	56
BfaI	CTAG	4 cut(s)	57, 591, 726, 770
BfmI	CTRYAG	1 cut(s)	945
BisI	GCNGC	4 cut(s)	417, 429, 774, 948
BlsI	GCNGC	4 cut(s)	418, 430, 775, 949
Bme1390I	CCNGG	1 cut(s)	896
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	896
BmsI	GCATC	2 cut(s)	131, 613
BpiI	GAAGAC	1 cut(s)	497
BpmI	CTGGAG	2 cut(s)	203, 653
BpuEI	CTTGAG	1 cut(s)	32
Bsa29I	ATCGAT	2 cut(s)	139, 824
BsaAI	YACGTR	1 cut(s)	842
BsaBI	GATNNNNATC	1 cut(s)	627
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bse1I	ACTGG	2 cut(s)	186, 493
Bse3DI	GCAATG	1 cut(s)	705
Bse8I	GATNNNNATC	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	896
BseCI	ATCGAT	2 cut(s)	139, 824
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	3 cut(s)	319, 628, 904
BseJI	GATNNNNATC	1 cut(s)	627
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	3 cut(s)	525, 620, 783
BseNI	ACTGG	2 cut(s)	186, 493
BseXI	GCAGC	2 cut(s)	403, 785
BseYI	CCCAGC	1 cut(s)	431
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	649
BshVI	ATCGAT	2 cut(s)	139, 824
BsiHKAI	GWGCWC	1 cut(s)	813
BsiWI	CGTACG	1 cut(s)	918
BsmAI	GTCTC	2 cut(s)	47, 347
BsnI	GGCC	1 cut(s)	649
Bso31I	GGTCTC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	813
Bsp143I	GATC	7 cut(s)	37, 45, 109, 136, 628, 683, 825
BspACI	CCGC	1 cut(s)	428
BspANI	GGCC	1 cut(s)	649
BspCNI	CTCAG	3 cut(s)	524, 619, 784
BspDI	ATCGAT	2 cut(s)	139, 824
BspHI	TCATGA	1 cut(s)	394
BspMAI	CTGCAG	1 cut(s)	949
BspPI	GGATC	3 cut(s)	45, 117, 820
BspQI	GCTCTTC	1 cut(s)	801
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	705
BsrI	ACTGG	2 cut(s)	186, 493
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	7 cut(s)	37, 45, 109, 136, 628, 683, 825
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	896
Bst4CI	ACNGT	2 cut(s)	171, 531
Bst6I	CTCTTC	2 cut(s)	396, 801
BstBAI	YACGTR	1 cut(s)	842
BstC8I	GCNNGC	1 cut(s)	945
BstDEI	CTNAG	3 cut(s)	511, 606, 792
BstF5I	GGATG	3 cut(s)	319, 628, 904
BstKTI	GATC	7 cut(s)	40, 48, 112, 139, 631, 686, 828
BstMAI	GTCTC	2 cut(s)	47, 347
BstMBI	GATC	7 cut(s)	37, 45, 109, 136, 628, 683, 825
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 458, 770
BstNI	CCWGG	1 cut(s)	896
BstSCI	CCNGG	1 cut(s)	894
BstSFI	CTRYAG	1 cut(s)	945
BstV1I	GCAGC	2 cut(s)	403, 785
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
Bsu15I	ATCGAT	2 cut(s)	139, 824
BsuRI	GGCC	1 cut(s)	649
BsuTUI	ATCGAT	2 cut(s)	139, 824
BtsCI	GGATG	3 cut(s)	319, 628, 904
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	2 cut(s)	486, 726
Cac8I	GCNNGC	1 cut(s)	945
CciI	TCATGA	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	161
ClaI	ATCGAT	2 cut(s)	139, 824
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	843, 919
CviAII	CATG	3 cut(s)	395, 863, 951
CviQI	GTAC	2 cut(s)	843, 919
DdeI	CTNAG	3 cut(s)	511, 606, 792
DpnI	GATC	7 cut(s)	39, 47, 111, 138, 630, 685, 827
DpnII	GATC	7 cut(s)	37, 45, 109, 136, 628, 683, 825
Eam1104I	CTCTTC	2 cut(s)	396, 801
EarI	CTCTTC	2 cut(s)	396, 801
Ecl136II	GAGCTC	1 cut(s)	811
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	813
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	811
Eco57I	CTGAAG	1 cut(s)	672
EcoICRI	GAGCTC	1 cut(s)	811
EcoRI	GAATTC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	894
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	813
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	3 cut(s)	398, 866, 954
FatI	CATG	3 cut(s)	394, 862, 950
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	417, 429, 774, 948
FokI	GGATG	3 cut(s)	326, 635, 911
FriOI	GRGCYC	1 cut(s)	813
Fsp4HI	GCNGC	4 cut(s)	417, 429, 774, 948
FspBI	CTAG	4 cut(s)	57, 591, 726, 770
GluI	GCNGC	4 cut(s)	417, 429, 774, 948
GsaI	CCCAGC	1 cut(s)	435
GsuI	CTGGAG	2 cut(s)	203, 653
HaeIII	GGCC	1 cut(s)	649
HgaI	GACGC	1 cut(s)	394
Hin1II	CATG	3 cut(s)	398, 866, 954
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HindIII	AAGCTT	2 cut(s)	269, 762
HinfI	GANTC	6 cut(s)	329, 398, 502, 568, 656, 797
HpaI	GTTAAC	1 cut(s)	466
Hpy166II	GTNNAC	2 cut(s)	438, 466
Hpy188I	TCNGA	9 cut(s)	91, 222, 244, 334, 514, 535, 683, 751, 793
Hpy188III	TCNNGA	4 cut(s)	164, 299, 395, 632
Hpy8I	GTNNAC	2 cut(s)	438, 466
HpyCH4III	ACNGT	2 cut(s)	171, 531
HpyCH4IV	ACGT	2 cut(s)	841, 921
HpyCH4V	TGCA	6 cut(s)	4, 206, 283, 326, 596, 947
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 458, 770
HpyF3I	CTNAG	3 cut(s)	511, 606, 792
HpySE526I	ACGT	2 cut(s)	841, 921
Hsp92II	CATG	3 cut(s)	398, 866, 954
Ksp22I	TGATCA	1 cut(s)	45
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	7 cut(s)	37, 45, 109, 136, 628, 683, 825
LguI	GCTCTTC	1 cut(s)	801
Lsp1109I	GCAGC	2 cut(s)	403, 785
LweI	GCATC	2 cut(s)	131, 613
MaeI	CTAG	4 cut(s)	57, 591, 726, 770
MaeII	ACGT	2 cut(s)	841, 921
MaeIII	GTNAC	2 cut(s)	736, 903
MalI	GATC	7 cut(s)	39, 47, 111, 138, 630, 685, 827
MboI	GATC	7 cut(s)	37, 45, 109, 136, 628, 683, 825
MboII	GAAGA	6 cut(s)	383, 497, 504, 626, 665, 818
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	813
MluCI	AATT	4 cut(s)	76, 233, 474, 536
MlyI	GAGTC	2 cut(s)	338, 511
MmeI	TCCRAC	4 cut(s)	153, 200, 291, 312
MseI	TTAA	3 cut(s)	273, 306, 465
MslI	CAYNNNNRTG	2 cut(s)	743, 861
MspR9I	CCNGG	1 cut(s)	896
MvaI	CCWGG	1 cut(s)	896
MwoI	GCNNNNNNNGC	3 cut(s)	425, 458, 770
NdeII	GATC	7 cut(s)	37, 45, 109, 136, 628, 683, 825
NlaIII	CATG	3 cut(s)	398, 866, 954
NmuCI	GTSAC	1 cut(s)	736
PagI	TCATGA	1 cut(s)	394
PciSI	GCTCTTC	1 cut(s)	801
PfeI	GAWTC	4 cut(s)	398, 568, 656, 797
Pfl23II	CGTACG	1 cut(s)	918
PfoI	TCCNGGA	1 cut(s)	894
PkrI	GCNGC	4 cut(s)	418, 430, 775, 949
PleI	GAGTC	2 cut(s)	337, 510
PpsI	GAGTC	2 cut(s)	337, 510
Ppu21I	YACGTR	1 cut(s)	842
Psp124BI	GAGCTC	1 cut(s)	813
Psp6I	CCWGG	1 cut(s)	894
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	894
PspLI	CGTACG	1 cut(s)	918
PspPI	GGNCC	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	949
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	2 cut(s)	844, 920
RsaNI	GTAC	2 cut(s)	843, 919
RseI	CAYNNNNRTG	2 cut(s)	743, 861
SacI	GAGCTC	1 cut(s)	813
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	3 cut(s)	273, 306, 465
SatI	GCNGC	4 cut(s)	417, 429, 774, 948
Sau3AI	GATC	7 cut(s)	37, 45, 109, 136, 628, 683, 825
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	2 cut(s)	338, 511
ScrFI	CCNGG	1 cut(s)	896
SduI	GDGCHC	1 cut(s)	813
SfaNI	GCATC	2 cut(s)	131, 613
SfcI	CTRYAG	1 cut(s)	945
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	2 cut(s)	743, 861
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SpeI	ACTAGT	1 cut(s)	56
Sse9I	AATT	4 cut(s)	76, 233, 474, 536
SsiI	CCGC	1 cut(s)	428
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	4 cut(s)	57, 591, 726, 770
SstI	GAGCTC	1 cut(s)	813
StyD4I	CCNGG	1 cut(s)	894
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	171, 531
TaiI	ACGT	2 cut(s)	844, 924
TaqI	TCGA	3 cut(s)	139, 824, 932
TasI	AATT	4 cut(s)	76, 233, 474, 536
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	4 cut(s)	398, 568, 656, 797
Tru1I	TTAA	3 cut(s)	273, 306, 465
Tru9I	TTAA	3 cut(s)	273, 306, 465
TscAI	CASTG	2 cut(s)	493, 726
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	3 cut(s)	416, 773, 947
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	3 cut(s)	383, 398, 512
TspRI	CASTG	2 cut(s)	493, 726
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	76
XspI	CTAG	4 cut(s)	57, 591, 726, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.