Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009119

Physical Location & Seq

Genomic Coordinates Reverse (-)

7294646 .. 7301743

Gene Structure 7098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGAGAGTAGAGCACAGAGACGATTGGATTCAATTACCCACCACCTTGTTCTTCCAATTCAATCCAATCGTGGCCTTCAAAAGGTTGTGTTATCAAGTAATAATGGGGGAAACAAGCATGAGGAGGCAGAGCCAGTGGTGATAGGGGGCATGGTATTAGACATTCATGCCACTCCTTCCCTTCCTGCAAATCCCAGAACCACAACTCCTGGCAAGGTGAGCTATGTATTAGGAGGGGTGGCGAGGAATGTTGCCGAGTGCATGTCCAAGCTGGGAGCAAAGCCTTTCATGATTAGCGCCTTGGGGCTTGACATGGCAGGAAACCTATTGTTGGAGCACTGGGAGTCTGCTGGGCTACCAACCGAAGGAATTTGGAAGCACCAAAATATCGAGACTGCTGTTGTTTGCAGCATACTTGATGCCAGTGGGGAGTTGGCAACTGCTGTTGCAAGTGTAGAATCTATTGACAAGTTTCTAAGACCTGAGTGGATTGAGCGGTTCAGATGTAATATACGTTCTGCTACAGTGGTGATGGTTGACGCAAACTTGAACCCTTCTGCTCTAAAGTCTTCTTGCCAATTGGCAGCAGAATCTAAAATTCCTGTGTGGTTTGAGCCTGTTTCGGTAGAAAAATCAAGAAGAATCAATTCAGTTGTCAAGTATATAAGTTTTGCTTCTCCCAATGAAGATGAACTTGTTGCTATGGCAAATACTTTATCTGGTGGTAATGTGTTCTGTCCTATTGAAAGGGAAAGCAGCCCAAGTAAATGTTCAAAAGGAAAGTTGTTTGATATGCTGAAACCTGCAGTCTGGGTTTTGCTAGAGAACGGCATCAAAATAGTTATTGTGACACTTGGTCCAGATGGAGTGTTCTTATGCTCTAAAGGAGGACCAAGCCTTATGAGAGTTGGTTGTGAGGGAATCAAACCATACAACTCGAATGGAATATTGTTTAAAACTATGACTGCAAGTTGTCCTCCAAAACCATTTTTGAGTCTTCAGGATTCTGAAACAAGCTCATTCCTGTTTGCTGTGCATTTTCCTGCACTTCCGGCATCTGTGGTTAGGCTTACAGGGGCTGGCGATTGTTTGGTTGGGGGTACAATTTCTTCTCTCTGTGCAGGCTTAGATATCGTGCAGAGTGTGGCAGTTGGTATTGCAGCTTCCAAAGCTGCAGTTGAGTCAGAGACCAATGTGCCTTCTGCAATTAATTTGGCTGTCATTGCAGATGATGCAAAGTCGGTATACTCAGCTGCTGAAGTTGTATTCCATCAATCAATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

429

Amino Acids

45.43

Weight (kDa)

6.27

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	46 - 299	8.1e-24	pfkB family carbohydrate kinase
PfkB	PF00294	345 - 396	1.5e-06	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49350
fragaria_vesca	FvH4_2g08380
malus_domestica	MD10G1080400.v1.1
prunus_persica	Prupe.8G101700_v2.0.a1 Prupe.8G101700_v2.0.a1
pyrus_communis	pycom10g06360
rosa_chinensis	RchiOBHm_Chr6g0263461
rosa_laevigata	RLG00000014333 RLG00000014340
rosa_multiflora	Rmu_sc0000565.1_g000042 Rmu_sc0003785.1_g000022
rosa_roxburghii	Rroxscaffold_176G00431090 Rroxscaffold_176G00431100 Rroxscaffold_7G00204170 Rroxscaffold_7G00204180
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh6AG124600 Rh6BG120700 Rh6CG118900 Rh6DG107200
rosa_wichuraiana	Rw6G010690 Rw6G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	811
AccBSI	CCGCTC	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	1245
AciI	CCGC	1 cut(s)	496
AcsI	RAATTY	2 cut(s)	369, 597
AcuI	CTGAAG	2 cut(s)	983, 1278
AfaI	GTAC	1 cut(s)	1102
AfiI	CCNNNNNNNGG	3 cut(s)	82, 331, 365
AgsI	TTSAA	6 cut(s)	33, 62, 80, 550, 746, 774
AhdI	GACNNNNNGTC	1 cut(s)	855
AjnI	CCWGG	1 cut(s)	208
AjuI	GAANNNNNNNTTGG	2 cut(s)	754, 786
AloI	GAACNNNNNNTCC	2 cut(s)	190, 222
AluBI	AGCT	6 cut(s)	222, 271, 1017, 1163, 1172, 1253
AluI	AGCT	6 cut(s)	222, 271, 1017, 1163, 1172, 1253
Alw21I	GWGCWC	2 cut(s)	16, 339
Alw26I	GTCTC	3 cut(s)	13, 386, 1181
AlwNI	CAGNNNCTG	2 cut(s)	1079, 1256
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	6 cut(s)	408, 584, 756, 1160, 1172, 1253
ApoI	RAATTY	2 cut(s)	369, 597
AseI	ATTAAT	1 cut(s)	1209
Asp700I	GAANNNNTTC	1 cut(s)	646
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	857, 890
AsuHPI	GGTGA	3 cut(s)	151, 229, 541
AvaII	GGWCC	2 cut(s)	857, 890
BarI	GAAGNNNNNNTAC	4 cut(s)	1093, 1125, 1147, 1179
BbsI	GAAGAC	2 cut(s)	561, 989
Bbv12I	GWGCWC	2 cut(s)	16, 339
BbvI	GCAGC	6 cut(s)	420, 596, 768, 1159, 1172, 1240
BccI	CCATC	3 cut(s)	526, 857, 1278
BceAI	ACGGC	1 cut(s)	844
BciT130I	CCWGG	1 cut(s)	210
BcoDI	GTCTC	3 cut(s)	13, 386, 1181
BfaI	CTAG	1 cut(s)	821
BfmI	CTRYAG	3 cut(s)	522, 804, 1173
BfoI	RGCGCY	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	811
BisI	GCNGC	6 cut(s)	409, 585, 757, 1161, 1173, 1254
BlsI	GCNGC	6 cut(s)	410, 586, 758, 1162, 1174, 1255
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	2 cut(s)	857, 890
BmeRI	GACNNNNNGTC	1 cut(s)	855
BmgT120I	GGNCC	2 cut(s)	857, 890
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	4 cut(s)	409, 840, 1064, 1222
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	2 cut(s)	561, 989
BsaI	GGTCTC	1 cut(s)	1181
BsaJI	CCNNGG	1 cut(s)	300
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 331, 365
Bse1I	ACTGG	3 cut(s)	134, 344, 423
Bse3DI	GCAATG	1 cut(s)	1221
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	300
BseLI	CCNNNNNNNGG	3 cut(s)	82, 331, 365
BseMI	GCAATG	1 cut(s)	1221
BseMII	CTCAG	2 cut(s)	474, 1263
BseNI	ACTGG	3 cut(s)	134, 344, 423
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	6 cut(s)	420, 596, 768, 1159, 1172, 1240
BseYI	CCCAGC	2 cut(s)	271, 350
BsgI	GTGCAG	3 cut(s)	1029, 1140, 1157
BshFI	GGCC	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	16, 339
BsiSI	CCGG	1 cut(s)	1052
BslI	CCNNNNNNNGG	3 cut(s)	82, 331, 365
BsmAI	GTCTC	3 cut(s)	13, 386, 1181
BsmBI	CGTCTC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	75
Bso31I	GGTCTC	1 cut(s)	1181
Bsp1286I	GDGCHC	2 cut(s)	16, 339
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	2 cut(s)	475, 1262
BspHI	TCATGA	1 cut(s)	288
BspMAI	CTGCAG	2 cut(s)	808, 1177
BspMI	ACCTGC	1 cut(s)	811
BspTNI	GGTCTC	1 cut(s)	1181
BsrBI	CCGCTC	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	1221
BsrI	ACTGG	3 cut(s)	134, 344, 423
BssECI	CCNNGG	1 cut(s)	300
BssNAI	GTATAC	1 cut(s)	1246
BssT1I	CCWWGG	1 cut(s)	300
Bst1107I	GTATAC	1 cut(s)	1246
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	526
BstAPI	GCANNNNNTGC	1 cut(s)	1232
BstC8I	GCNNGC	2 cut(s)	1081, 1123
BstDEI	CTNAG	4 cut(s)	476, 483, 1126, 1249
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstMAI	GTCTC	3 cut(s)	13, 386, 1181
BstMWI	GCNNNNNNNGC	5 cut(s)	219, 1052, 1169, 1223, 1232
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	3 cut(s)	522, 804, 1173
BstV1I	GCAGC	6 cut(s)	420, 596, 768, 1159, 1172, 1240
BstV2I	GAAGAC	2 cut(s)	561, 989
BstZ17I	GTATAC	1 cut(s)	1246
BsuRI	GGCC	1 cut(s)	75
BtsIMutI	CAGTG	4 cut(s)	141, 337, 430, 531
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	2 cut(s)	1081, 1123
CaiI	CAGNNNCTG	2 cut(s)	1079, 1256
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	857, 890
CseI	GACGC	1 cut(s)	548
Csp6I	GTAC	1 cut(s)	1101
CviAII	CATG	6 cut(s)	119, 151, 167, 262, 289, 313
CviQI	GTAC	1 cut(s)	1101
DdeI	CTNAG	4 cut(s)	476, 483, 1126, 1249
DraI	TTTAAA	1 cut(s)	955
DriI	GACNNNNNGTC	1 cut(s)	855
Eam1105I	GACNNNNNGTC	1 cut(s)	855
Eco130I	CCWWGG	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	1181
Eco32I	GATATC	1 cut(s)	1132
Eco47I	GGWCC	2 cut(s)	857, 890
Eco57I	CTGAAG	2 cut(s)	983, 1278
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	1132
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	6 cut(s)	122, 154, 170, 265, 292, 316
FalI	AAGNNNNNCTT	4 cut(s)	658, 690, 678, 710
FatI	CATG	6 cut(s)	118, 150, 166, 261, 288, 312
FblI	GTMKAC	1 cut(s)	1245
Fnu4HI	GCNGC	6 cut(s)	409, 585, 757, 1161, 1173, 1254
Fsp4HI	GCNGC	6 cut(s)	409, 585, 757, 1161, 1173, 1254
FspBI	CTAG	1 cut(s)	821
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	6 cut(s)	409, 585, 757, 1161, 1173, 1254
GsaI	CCCAGC	2 cut(s)	275, 354
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	1052
HgaI	GACGC	1 cut(s)	548
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	6 cut(s)	122, 154, 170, 265, 292, 316
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	9 cut(s)	29, 344, 458, 590, 642, 921, 994, 1004, 1181
HpaII	CCGG	1 cut(s)	1052
HphI	GGTGA	3 cut(s)	151, 229, 541
Hpy166II	GTNNAC	2 cut(s)	538, 1246
Hpy188I	TCNGA	3 cut(s)	503, 1009, 1186
Hpy188III	TCNNGA	5 cut(s)	289, 391, 636, 860, 1001
Hpy8I	GTNNAC	2 cut(s)	538, 1246
HpyAV	CCTTC	6 cut(s)	86, 186, 191, 359, 564, 1209
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4IV	ACGT	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	5 cut(s)	219, 1052, 1169, 1223, 1232
HpyF3I	CTNAG	4 cut(s)	476, 483, 1126, 1249
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	6 cut(s)	122, 154, 170, 265, 292, 316
HspAI	GCGC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	275, 334
Lsp1109I	GCAGC	6 cut(s)	420, 596, 768, 1159, 1172, 1240
LweI	GCATC	4 cut(s)	409, 840, 1064, 1222
MaeI	CTAG	1 cut(s)	821
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	1 cut(s)	847
MbiI	CCGCTC	1 cut(s)	496
MboII	GAAGA	6 cut(s)	44, 561, 651, 698, 989, 1101
MfeI	CAATTG	1 cut(s)	578
MhlI	GDGCHC	2 cut(s)	16, 339
MluCI	AATT	9 cut(s)	33, 57, 369, 578, 597, 646, 1104, 1206, 1210
MlyI	GAGTC	3 cut(s)	353, 1003, 1190
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	7 cut(s)	115, 118, 227, 237, 881, 910, 987
MroXI	GAANNNNTTC	1 cut(s)	646
MseI	TTAA	2 cut(s)	954, 1209
MspA1I	CMGCKG	1 cut(s)	1253
MspI	CCGG	1 cut(s)	1052
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	578
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	5 cut(s)	219, 1052, 1169, 1223, 1232
NlaIII	CATG	6 cut(s)	122, 154, 170, 265, 292, 316
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	847
NspI	RCATGY	1 cut(s)	265
PagI	TCATGA	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	646
PfeI	GAWTC	6 cut(s)	29, 458, 590, 642, 921, 1004
PkrI	GCNGC	6 cut(s)	410, 586, 758, 1162, 1174, 1255
PleI	GAGTC	3 cut(s)	352, 1002, 1189
PpsI	GAGTC	3 cut(s)	352, 1002, 1189
PshBI	ATTAAT	1 cut(s)	1209
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	2 cut(s)	271, 350
PspGI	CCWGG	1 cut(s)	208
PspPI	GGNCC	2 cut(s)	857, 890
PsrI	GAACNNNNNNTAC	2 cut(s)	499, 531
PstI	CTGCAG	2 cut(s)	808, 1177
PstNI	CAGNNNCTG	2 cut(s)	1079, 1256
PvuII	CAGCTG	1 cut(s)	1253
RsaI	GTAC	1 cut(s)	1102
RsaNI	GTAC	1 cut(s)	1101
SaqAI	TTAA	2 cut(s)	954, 1209
SatI	GCNGC	6 cut(s)	409, 585, 757, 1161, 1173, 1254
Sau96I	GGNCC	2 cut(s)	857, 890
SchI	GAGTC	3 cut(s)	353, 1003, 1190
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	16, 339
SfaNI	GCATC	4 cut(s)	409, 840, 1064, 1222
SfcI	CTRYAG	3 cut(s)	522, 804, 1173
SinI	GGWCC	2 cut(s)	857, 890
Sse9I	AATT	9 cut(s)	33, 57, 369, 578, 597, 646, 1104, 1206, 1210
SsiI	CCGC	1 cut(s)	496
SspI	AATATT	1 cut(s)	948
SspMI	CTAG	1 cut(s)	821
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	526
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	2 cut(s)	390, 938
TasI	AATT	9 cut(s)	33, 57, 369, 578, 597, 646, 1104, 1206, 1210
TfiI	GAWTC	6 cut(s)	29, 458, 590, 642, 921, 1004
Tru1I	TTAA	2 cut(s)	954, 1209
Tru9I	TTAA	2 cut(s)	954, 1209
TscAI	CASTG	4 cut(s)	141, 344, 430, 531
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	6 cut(s)	408, 584, 756, 1160, 1172, 1253
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	4 cut(s)	155, 277, 699, 705
TspRI	CASTG	4 cut(s)	141, 344, 430, 531
VpaK11BI	GGWCC	2 cut(s)	857, 890
VspI	ATTAAT	1 cut(s)	1209
XagI	CCTNNNNNAGG	1 cut(s)	80
XapI	RAATTY	2 cut(s)	369, 597
XceI	RCATGY	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XmiI	GTMKAC	1 cut(s)	1245
XmnI	GAANNNNTTC	1 cut(s)	646
XspI	CTAG	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.