Rh6AG124600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009119
Physical Location & Seq
Reverse (-)
18587078 .. 18630441
43364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG124600.1

Sequence Viewer

Length: 1263 bp
ATGGAGAGCAGTGCACAGAGGCGCTTGGATTCAATTACCCGCCACCTTCTTCTTCCACTTCAATCCAATCATGGCCTTCAAAAGGTGGTGTTATCAAGTAATGGGGGATTGAAGCATGAAGAGGCAGAGCCAGTGGTGATAGGGGGTATGGTGTTGGACATTCATGCCACTCCTTCTTTCCCTGCAAATCCCAGAACCACTACTCCAGGCAAGGTGAGCTATGTATTGGGAGGGGTGGCAAGGAATGTTGCCGAGTGCATGTCCAAGCTGGGAGCAAAGCCATTCATGATTAGTGCCTTGGGGCTTGACATGGCAGGAAACTTATTATTGGAGCACTGGGAGTCTGCTGGGCTATCAACCGAAGGAATTTGGAAGTACCAAAATATCGAGACTGCTGTTGTTTGCAGCATAATTGATTCCAGTGGGGAGTTGGCAACTGCTGTTGCAAGTGTAGAATCTATTGAAAAATTTCTAACACCTGAGTGGATTGAGCGGTTCAGATGCAATATACATTCTGCTACAGTGGTCATGGTTGACGCTAACTTGAACCCTTCTGCTCTAAAGTCTTCTTGCCAATTGGCAGCAGATTCTAAAGTTCCTGTGTGGTTTGAGCCGGTTTCGGTAGAAAAATCAAGAAGAATCAATTCAGTTGTCAAGTATATAAGTTTTGCTTCTCCCAATGAAGATGAACTTGTTGCTATGGCAAATACTTTATCTGGTGGTAATGTGTTTTGTCCAATTGAAAGGGAAAGTAGCACAAGTAAACGTTCAAAAGAAAAGTTGTTTCATATGCTAAAACCTGCAGTCTGGGTTTTGCTAGAGAATGGCATCAAAATAGTTATTGTGACACTTGGTTCGGATGGAGTGTTCTTATGCTCTAAAGGAGGGCCAAGCTTGATGAGAGTTGGTTGTGATGGAATCAAACCATGTAACTCGAATGAAATATTTTTTAATACTATGACTGCAAGTTGTCCTCCAAAACCATATTCGAGTCTTCAGGATTCTGAGAGAAGCTCTTTTCTATTTGCTGTGCATTTTCCTGCGCTTCTCGCATCAGTGGTTAGGCTTACAGGGGCTGGTGATTGTCTGGTTGGGGGAACACTTTCTTCTCTTTGTGCAGGCTTAGATATCATGCAAAGTGTGGCAGTTGGTATTGCAGCTTCTAAAGCTGCAGTTGAGTCAAAGACCAATGTGCCTTCCACATTTAATTTGGCTGCAATTGCAGGTTTGCATTTGAATATCTATTTGCAAAAAGAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

420

Amino Acids

44.91

Weight (kDa)

6.76

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 45 - 297 8.5e-25 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 808, 1214
AccBSI CCGCTC 1 cut(s) 493
AciI CCGC 2 cut(s) 40, 493
AclI AACGTT 1 cut(s) 766
AcsI RAATTY 2 cut(s) 366, 467
AcuI CTGAAG 1 cut(s) 980
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 9 cut(s) 33, 62, 80, 112, 464, 547, 743, 771, 1237
AjnI CCWGG 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 970, 1002
AleI CACNNNNGTG 1 cut(s) 481
AloI GAACNNNNNNTCC 4 cut(s) 187, 219, 851, 883
AluBI AGCT 6 cut(s) 219, 268, 894, 1014, 1160, 1169
AluI AGCT 6 cut(s) 219, 268, 894, 1014, 1160, 1169
Alw21I GWGCWC 2 cut(s) 16, 336
Alw26I GTCTC 1 cut(s) 383
Alw44I GTGCAC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 1076
AoxI GGCC 2 cut(s) 73, 887
ApaLI GTGCAC 1 cut(s) 12
ApeKI GCWGC 5 cut(s) 405, 581, 1157, 1169, 1214
ApoI RAATTY 2 cut(s) 366, 467
ArsI GACNNNNNNTTYG 2 cut(s) 838, 870
Asp700I GAANNNNTTC 3 cut(s) 468, 643, 1102
AspLEI GCGC 2 cut(s) 24, 1045
AspS9I GGNCC 1 cut(s) 887
AsuHPI GGTGA 3 cut(s) 148, 226, 1091
BaeGI GKGCMC 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 1144, 1176
BbsI GAAGAC 2 cut(s) 558, 986
Bbv12I GWGCWC 2 cut(s) 16, 336
BbvI GCAGC 5 cut(s) 417, 593, 1156, 1169, 1201
BccI CCATC 2 cut(s) 854, 908
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 818
BfmI CTRYAG 3 cut(s) 519, 801, 1170
BfoI RGCGCY 1 cut(s) 25
BfuAI ACCTGC 2 cut(s) 808, 1214
BisI GCNGC 5 cut(s) 406, 582, 1158, 1170, 1215
BlsI GCNGC 5 cut(s) 407, 583, 1159, 1171, 1216
Bme1390I CCNGG 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 887
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 3 cut(s) 491, 837, 1061
BmuI ACTGGG 1 cut(s) 346
BpiI GAAGAC 2 cut(s) 558, 986
BplI GAGNNNNNCTC 2 cut(s) 998, 1030
BpmI CTGGAG 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 613
Bse1I ACTGG 3 cut(s) 131, 341, 420
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 865
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 2 cut(s) 471, 996
BseNI ACTGG 3 cut(s) 131, 341, 420
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 5 cut(s) 417, 593, 1156, 1169, 1201
BseYI CCCAGC 2 cut(s) 268, 347
BsgI GTGCAG 1 cut(s) 1137
BshFI GGCC 2 cut(s) 75, 889
BsiHKAI GWGCWC 2 cut(s) 16, 336
BsiSI CCGG 1 cut(s) 614
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 383
BsnI GGCC 2 cut(s) 75, 889
Bsp1286I GDGCHC 2 cut(s) 16, 336
BspACI CCGC 2 cut(s) 40, 493
BspANI GGCC 2 cut(s) 75, 889
BspCNI CTCAG 2 cut(s) 472, 997
BspHI TCATGA 1 cut(s) 285
BspMAI CTGCAG 2 cut(s) 805, 1174
BspMI ACCTGC 2 cut(s) 808, 1214
BsrBI CCGCTC 1 cut(s) 493
BsrFI RCCGGY 1 cut(s) 613
BsrI ACTGG 3 cut(s) 131, 341, 420
BssAI RCCGGY 1 cut(s) 613
BssECI CCNNGG 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 1120
BstDEI CTNAG 3 cut(s) 480, 1005, 1123
BstENI CCTNNNNNAGG 1 cut(s) 80
BstF5I GGATG 1 cut(s) 865
BstH2I RGCGCY 1 cut(s) 25
BstHHI GCGC 2 cut(s) 24, 1045
BstMAI GTCTC 1 cut(s) 383
BstMWI GCNNNNNNNGC 4 cut(s) 216, 1049, 1166, 1220
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 3 cut(s) 519, 801, 1170
BstSLI GKGCMC 1 cut(s) 16
BstV1I GCAGC 5 cut(s) 417, 593, 1156, 1169, 1201
BstV2I GAAGAC 2 cut(s) 558, 986
BsuRI GGCC 2 cut(s) 75, 889
BtsCI GGATG 1 cut(s) 865
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 6 cut(s) 16, 138, 334, 427, 528, 1062
BveI ACCTGC 2 cut(s) 808, 1214
Cac8I GCNNGC 1 cut(s) 1120
CaiI CAGNNNCTG 1 cut(s) 1076
CciI TCATGA 1 cut(s) 285
CfoI GCGC 2 cut(s) 24, 1045
Cfr10I RCCGGY 1 cut(s) 613
Cfr13I GGNCC 1 cut(s) 887
CseI GACGC 1 cut(s) 545
Csp6I GTAC 1 cut(s) 376
CviAII CATG 9 cut(s) 71, 116, 164, 259, 286, 310, 529, 927, 1132
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 3 cut(s) 480, 1005, 1123
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 297
Eco32I GATATC 1 cut(s) 1129
Eco57I CTGAAG 1 cut(s) 980
EcoNI CCTNNNNNAGG 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 205
EcoRV GATATC 1 cut(s) 1129
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 9 cut(s) 74, 119, 167, 262, 289, 313, 532, 930, 1135
FalI AAGNNNNNCTT 4 cut(s) 655, 687, 675, 707
FatI CATG 9 cut(s) 70, 115, 163, 258, 285, 309, 528, 926, 1131
FauI CCCGC 1 cut(s) 47
FauNDI CATATG 1 cut(s) 789
Fnu4HI GCNGC 5 cut(s) 406, 582, 1158, 1170, 1215
FokI GGATG 1 cut(s) 872
Fsp4HI GCNGC 5 cut(s) 406, 582, 1158, 1170, 1215
FspBI CTAG 1 cut(s) 818
GlaI GCGC 2 cut(s) 23, 1044
GluI GCNGC 5 cut(s) 406, 582, 1158, 1170, 1215
GsaI CCCAGC 2 cut(s) 272, 351
GsuI CTGGAG 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 25
HaeIII GGCC 2 cut(s) 75, 889
HapII CCGG 1 cut(s) 614
HgaI GACGC 1 cut(s) 545
HhaI GCGC 2 cut(s) 24, 1045
Hin1II CATG 9 cut(s) 74, 119, 167, 262, 289, 313, 532, 930, 1135
Hin6I GCGC 2 cut(s) 22, 1043
HinP1I GCGC 2 cut(s) 22, 1043
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HindIII AAGCTT 1 cut(s) 892
HpaII CCGG 1 cut(s) 614
HphI GGTGA 3 cut(s) 148, 226, 1091
Hpy166II GTNNAC 3 cut(s) 14, 535, 764
Hpy188I TCNGA 3 cut(s) 500, 859, 1006
Hpy188III TCNNGA 4 cut(s) 286, 388, 633, 998
Hpy8I GTNNAC 3 cut(s) 14, 535, 764
HpyAV CCTTC 6 cut(s) 56, 86, 183, 356, 561, 1206
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 1 cut(s) 766
HpyF10VI GCNNNNNNNGC 4 cut(s) 216, 1049, 1166, 1220
HpyF3I CTNAG 3 cut(s) 480, 1005, 1123
HpySE526I ACGT 1 cut(s) 766
Hsp92II CATG 9 cut(s) 74, 119, 167, 262, 289, 313, 532, 930, 1135
HspAI GCGC 2 cut(s) 22, 1043
LmnI GCTCC 2 cut(s) 272, 331
Lsp1109I GCAGC 5 cut(s) 417, 593, 1156, 1169, 1201
LweI GCATC 3 cut(s) 491, 837, 1061
MaeI CTAG 1 cut(s) 818
MaeII ACGT 1 cut(s) 766
MaeIII GTNAC 2 cut(s) 844, 929
MbiI CCGCTC 1 cut(s) 493
MboII GAAGA 8 cut(s) 41, 44, 131, 558, 648, 695, 986, 1098
MfeI CAATTG 3 cut(s) 575, 738, 1218
MhlI GDGCHC 2 cut(s) 16, 336
MluCI AATT 9 cut(s) 33, 366, 411, 467, 575, 643, 738, 1207, 1218
MlyI GAGTC 3 cut(s) 350, 1000, 1187
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 5 cut(s) 12, 115, 224, 878, 984
MroXI GAANNNNTTC 3 cut(s) 468, 643, 1102
MseI TTAA 2 cut(s) 951, 1206
MslI CAYNNNNRTG 1 cut(s) 481
MspI CCGG 1 cut(s) 614
MspR9I CCNGG 1 cut(s) 207
MunI CAATTG 3 cut(s) 575, 738, 1218
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 4 cut(s) 216, 1049, 1166, 1220
NdeI CATATG 1 cut(s) 789
NlaIII CATG 9 cut(s) 74, 119, 167, 262, 289, 313, 532, 930, 1135
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 844
NspI RCATGY 1 cut(s) 262
OliI CACNNNNGTG 1 cut(s) 481
PagI TCATGA 1 cut(s) 285
PdmI GAANNNNTTC 3 cut(s) 468, 643, 1102
PfeI GAWTC 7 cut(s) 29, 416, 455, 587, 639, 918, 1001
PkrI GCNGC 5 cut(s) 407, 583, 1159, 1171, 1216
PleI GAGTC 3 cut(s) 349, 999, 1186
PpsI GAGTC 3 cut(s) 349, 999, 1186
Psp1406I AACGTT 1 cut(s) 766
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 2 cut(s) 268, 347
PspGI CCWGG 1 cut(s) 205
PspPI GGNCC 1 cut(s) 887
PstI CTGCAG 2 cut(s) 805, 1174
PstNI CAGNNNCTG 1 cut(s) 1076
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 481
SaqAI TTAA 2 cut(s) 951, 1206
SatI GCNGC 5 cut(s) 406, 582, 1158, 1170, 1215
Sau96I GGNCC 1 cut(s) 887
SchI GAGTC 3 cut(s) 350, 1000, 1187
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 2 cut(s) 16, 336
SfaNI GCATC 3 cut(s) 491, 837, 1061
SfcI CTRYAG 3 cut(s) 519, 801, 1170
SmiMI CAYNNNNRTG 1 cut(s) 481
Sse9I AATT 9 cut(s) 33, 366, 411, 467, 575, 643, 738, 1207, 1218
SsiI CCGC 2 cut(s) 40, 493
SspI AATATT 1 cut(s) 945
SspMI CTAG 1 cut(s) 818
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 1 cut(s) 769
TaqI TCGA 3 cut(s) 387, 935, 989
TasI AATT 9 cut(s) 33, 366, 411, 467, 575, 643, 738, 1207, 1218
TfiI GAWTC 7 cut(s) 29, 416, 455, 587, 639, 918, 1001
Tru1I TTAA 2 cut(s) 951, 1206
Tru9I TTAA 2 cut(s) 951, 1206
TscAI CASTG 6 cut(s) 16, 138, 341, 427, 528, 1062
TseFI GTSAC 1 cut(s) 844
TseI GCWGC 5 cut(s) 405, 581, 1157, 1169, 1214
Tsp45I GTSAC 1 cut(s) 844
TspDTI ATGAA 7 cut(s) 132, 152, 274, 696, 702, 776, 954
TspRI CASTG 6 cut(s) 16, 138, 341, 427, 528, 1062
VneI GTGCAC 1 cut(s) 12
XagI CCTNNNNNAGG 1 cut(s) 80
XapI RAATTY 2 cut(s) 366, 467
XceI RCATGY 1 cut(s) 262
XcmI CCANNNNNNNNNTGG 2 cut(s) 427, 1207
XmnI GAANNNNTTC 3 cut(s) 468, 643, 1102
XspI CTAG 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.