Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G49350 |
| fragaria_vesca | FvH4_2g08380 |
| malus_domestica | MD10G1080400.v1.1 |
| prunus_persica | Prupe.8G101700_v2.0.a1 Prupe.8G101700_v2.0.a1 |
| pyrus_communis | pycom10g06360 |
| rosa_chinensis | RchiOBHm_Chr6g0263461 |
| rosa_laevigata | RLG00000014333 RLG00000014340 |
| rosa_multiflora | Rmu_sc0000565.1_g000042 Rmu_sc0003785.1_g000022 |
| rosa_roxburghii | Rroxscaffold_176G00431090 Rroxscaffold_176G00431100 Rroxscaffold_7G00204170 Rroxscaffold_7G00204180 |
| rosa_rugosa | Rorug06G0005100 |
| rosa_samantha | Rh6AG124600 Rh6BG120700 Rh6CG118900 Rh6DG107200 |
| rosa_wichuraiana | Rw6G010690 Rw6G010840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 464 |
| Acc36I | ACCTGC | 1 cut(s) | 610 |
| AccI | GTMKAC | 1 cut(s) | 1044 |
| AciI | CCGC | 2 cut(s) | 40, 920 |
| AclI | AACGTT | 1 cut(s) | 568 |
| AcsI | RAATTY | 1 cut(s) | 366 |
| AcuI | CTGAAG | 1 cut(s) | 782 |
| AgsI | TTSAA | 7 cut(s) | 33, 62, 80, 112, 545, 573, 754 |
| AjnI | CCWGG | 1 cut(s) | 205 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 772, 804 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 187, 219 |
| AluBI | AGCT | 7 cut(s) | 219, 268, 696, 816, 962, 971, 1052 |
| AluI | AGCT | 7 cut(s) | 219, 268, 696, 816, 962, 971, 1052 |
| Alw21I | GWGCWC | 2 cut(s) | 16, 336 |
| Alw26I | GTCTC | 1 cut(s) | 383 |
| Alw44I | GTGCAC | 1 cut(s) | 12 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 878, 1055 |
| AoxI | GGCC | 1 cut(s) | 689 |
| ApaLI | GTGCAC | 1 cut(s) | 12 |
| ApeKI | GCWGC | 3 cut(s) | 959, 971, 1052 |
| ApoI | RAATTY | 1 cut(s) | 366 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 904 |
| AspS9I | GGNCC | 1 cut(s) | 689 |
| AsuHPI | GGTGA | 3 cut(s) | 148, 226, 893 |
| BaeGI | GKGCMC | 1 cut(s) | 16 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 946, 978 |
| BbsI | GAAGAC | 2 cut(s) | 68, 788 |
| Bbv12I | GWGCWC | 2 cut(s) | 16, 336 |
| BbvCI | CCTCAGC | 1 cut(s) | 1056 |
| BbvI | GCAGC | 3 cut(s) | 958, 971, 1039 |
| BccI | CCATC | 3 cut(s) | 656, 710, 1077 |
| BciT130I | CCWGG | 1 cut(s) | 207 |
| BcoDI | GTCTC | 1 cut(s) | 383 |
| BfaI | CTAG | 1 cut(s) | 620 |
| BfmI | CTRYAG | 1 cut(s) | 972 |
| BfuAI | ACCTGC | 1 cut(s) | 610 |
| BisI | GCNGC | 3 cut(s) | 960, 972, 1053 |
| BlsI | GCNGC | 3 cut(s) | 961, 973, 1054 |
| Bme1390I | CCNGG | 1 cut(s) | 207 |
| BmgT120I | GGNCC | 1 cut(s) | 689 |
| BmrFI | CCNGG | 1 cut(s) | 207 |
| BmrI | ACTGGG | 1 cut(s) | 346 |
| BmsI | GCATC | 3 cut(s) | 639, 863, 1021 |
| BmuI | ACTGGG | 1 cut(s) | 346 |
| BoxI | GACNNNNGTC | 1 cut(s) | 992 |
| BpiI | GAAGAC | 2 cut(s) | 68, 788 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 800, 832 |
| BpmI | CTGGAG | 1 cut(s) | 189 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1056 |
| BsaJI | CCNNGG | 1 cut(s) | 297 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 187, 217 |
| Bse1I | ACTGG | 3 cut(s) | 131, 341, 420 |
| BseBI | CCWGG | 1 cut(s) | 207 |
| BseDI | CCNNGG | 1 cut(s) | 297 |
| BseMII | CTCAG | 3 cut(s) | 798, 1047, 1062 |
| BseNI | ACTGG | 3 cut(s) | 131, 341, 420 |
| BseSI | GKGCMC | 1 cut(s) | 16 |
| BseXI | GCAGC | 3 cut(s) | 958, 971, 1039 |
| BseYI | CCCAGC | 2 cut(s) | 268, 347 |
| BsgI | GTGCAG | 1 cut(s) | 828 |
| BshFI | GGCC | 1 cut(s) | 691 |
| BsiHKAI | GWGCWC | 2 cut(s) | 16, 336 |
| BslFI | GGGAC | 1 cut(s) | 980 |
| BsmAI | GTCTC | 1 cut(s) | 383 |
| BsmFI | GGGAC | 1 cut(s) | 980 |
| BsnI | GGCC | 1 cut(s) | 691 |
| Bsp1286I | GDGCHC | 2 cut(s) | 16, 336 |
| BspACI | CCGC | 2 cut(s) | 40, 920 |
| BspANI | GGCC | 1 cut(s) | 691 |
| BspCNI | CTCAG | 3 cut(s) | 799, 1048, 1061 |
| BspHI | TCATGA | 1 cut(s) | 285 |
| BspMAI | CTGCAG | 1 cut(s) | 976 |
| BspMI | ACCTGC | 1 cut(s) | 610 |
| BsrI | ACTGG | 3 cut(s) | 131, 341, 420 |
| BssECI | CCNNGG | 1 cut(s) | 297 |
| BssNAI | GTATAC | 1 cut(s) | 1045 |
| BssT1I | CCWWGG | 1 cut(s) | 297 |
| Bst1107I | GTATAC | 1 cut(s) | 1045 |
| Bst2UI | CCWGG | 1 cut(s) | 207 |
| Bst6I | CTCTTC | 1 cut(s) | 114 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 851, 1031 |
| BstC8I | GCNNGC | 1 cut(s) | 922 |
| BstDEI | CTNAG | 4 cut(s) | 807, 925, 1048, 1056 |
| BstMAI | GTCTC | 1 cut(s) | 383 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 216, 851, 968, 1031 |
| BstNI | CCWGG | 1 cut(s) | 207 |
| BstNSI | RCATGY | 1 cut(s) | 262 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 992 |
| BstSCI | CCNGG | 1 cut(s) | 205 |
| BstSFI | CTRYAG | 1 cut(s) | 972 |
| BstSLI | GKGCMC | 1 cut(s) | 16 |
| BstV1I | GCAGC | 3 cut(s) | 958, 971, 1039 |
| BstV2I | GAAGAC | 2 cut(s) | 68, 788 |
| BstZ17I | GTATAC | 1 cut(s) | 1045 |
| BsuRI | GGCC | 1 cut(s) | 691 |
| BtsI | GCAGTG | 1 cut(s) | 16 |
| BtsIMutI | CAGTG | 5 cut(s) | 16, 138, 334, 427, 864 |
| BveI | ACCTGC | 1 cut(s) | 610 |
| Cac8I | GCNNGC | 1 cut(s) | 922 |
| CaiI | CAGNNNCTG | 2 cut(s) | 878, 1055 |
| CciI | TCATGA | 1 cut(s) | 285 |
| Cfr13I | GGNCC | 1 cut(s) | 689 |
| CviAII | CATG | 8 cut(s) | 71, 116, 164, 259, 286, 310, 729, 934 |
| DdeI | CTNAG | 4 cut(s) | 807, 925, 1048, 1056 |
| Eam1104I | CTCTTC | 1 cut(s) | 114 |
| EarI | CTCTTC | 1 cut(s) | 114 |
| Eco130I | CCWWGG | 1 cut(s) | 297 |
| Eco32I | GATATC | 1 cut(s) | 931 |
| Eco57I | CTGAAG | 1 cut(s) | 782 |
| EcoRII | CCWGG | 1 cut(s) | 205 |
| EcoRV | GATATC | 1 cut(s) | 931 |
| EcoT14I | CCWWGG | 1 cut(s) | 297 |
| ErhI | CCWWGG | 1 cut(s) | 297 |
| FaeI | CATG | 8 cut(s) | 74, 119, 167, 262, 289, 313, 732, 937 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 457, 489, 477, 509 |
| FaqI | GGGAC | 1 cut(s) | 980 |
| FatI | CATG | 8 cut(s) | 70, 115, 163, 258, 285, 309, 728, 933 |
| FauI | CCCGC | 2 cut(s) | 47, 913 |
| FauNDI | CATATG | 1 cut(s) | 591 |
| FblI | GTMKAC | 1 cut(s) | 1044 |
| Fnu4HI | GCNGC | 3 cut(s) | 960, 972, 1053 |
| Fsp4HI | GCNGC | 3 cut(s) | 960, 972, 1053 |
| FspBI | CTAG | 1 cut(s) | 620 |
| GluI | GCNGC | 3 cut(s) | 960, 972, 1053 |
| GsaI | CCCAGC | 2 cut(s) | 272, 351 |
| GsuI | CTGGAG | 1 cut(s) | 189 |
| HaeIII | GGCC | 1 cut(s) | 691 |
| Hin1II | CATG | 8 cut(s) | 74, 119, 167, 262, 289, 313, 732, 937 |
| HinfI | GANTC | 7 cut(s) | 29, 341, 455, 720, 793, 803, 980 |
| HphI | GGTGA | 3 cut(s) | 148, 226, 893 |
| Hpy166II | GTNNAC | 3 cut(s) | 14, 566, 1045 |
| Hpy188I | TCNGA | 2 cut(s) | 661, 808 |
| Hpy188III | TCNNGA | 2 cut(s) | 286, 800 |
| Hpy8I | GTNNAC | 3 cut(s) | 14, 566, 1045 |
| HpyAV | CCTTC | 5 cut(s) | 59, 183, 292, 356, 1008 |
| HpyCH4IV | ACGT | 1 cut(s) | 568 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 216, 851, 968, 1031 |
| HpyF3I | CTNAG | 4 cut(s) | 807, 925, 1048, 1056 |
| HpySE526I | ACGT | 1 cut(s) | 568 |
| Hsp92II | CATG | 8 cut(s) | 74, 119, 167, 262, 289, 313, 732, 937 |
| LmnI | GCTCC | 2 cut(s) | 272, 331 |
| Lsp1109I | GCAGC | 3 cut(s) | 958, 971, 1039 |
| LweI | GCATC | 3 cut(s) | 639, 863, 1021 |
| MaeI | CTAG | 1 cut(s) | 620 |
| MaeII | ACGT | 1 cut(s) | 568 |
| MaeIII | GTNAC | 2 cut(s) | 646, 731 |
| MboII | GAAGA | 6 cut(s) | 44, 68, 131, 497, 788, 900 |
| MfeI | CAATTG | 2 cut(s) | 540, 1020 |
| MhlI | GDGCHC | 2 cut(s) | 16, 336 |
| MluCI | AATT | 7 cut(s) | 33, 57, 366, 540, 903, 1009, 1020 |
| MlyI | GAGTC | 3 cut(s) | 350, 802, 989 |
| MmeI | TCCRAC | 1 cut(s) | 135 |
| MnlI | CCTC | 7 cut(s) | 12, 56, 115, 224, 680, 786, 1051 |
| MroXI | GAANNNNTTC | 1 cut(s) | 904 |
| MseI | TTAA | 1 cut(s) | 1008 |
| MspA1I | CMGCKG | 1 cut(s) | 1052 |
| MspR9I | CCNGG | 1 cut(s) | 207 |
| MunI | CAATTG | 2 cut(s) | 540, 1020 |
| MvaI | CCWGG | 1 cut(s) | 207 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 216, 851, 968, 1031 |
| NdeI | CATATG | 1 cut(s) | 591 |
| NlaIII | CATG | 8 cut(s) | 74, 119, 167, 262, 289, 313, 732, 937 |
| NmeAIII | GCCGAG | 2 cut(s) | 277, 717 |
| NmuCI | GTSAC | 1 cut(s) | 646 |
| NspI | RCATGY | 1 cut(s) | 262 |
| PagI | TCATGA | 1 cut(s) | 285 |
| PdmI | GAANNNNTTC | 1 cut(s) | 904 |
| PfeI | GAWTC | 4 cut(s) | 29, 455, 720, 803 |
| PkrI | GCNGC | 3 cut(s) | 961, 973, 1054 |
| PleI | GAGTC | 3 cut(s) | 349, 801, 988 |
| PpsI | GAGTC | 3 cut(s) | 349, 801, 988 |
| PshAI | GACNNNNGTC | 1 cut(s) | 992 |
| PsiI | TTATAA | 1 cut(s) | 464 |
| Psp1406I | AACGTT | 1 cut(s) | 568 |
| Psp6I | CCWGG | 1 cut(s) | 205 |
| PspFI | CCCAGC | 2 cut(s) | 268, 347 |
| PspGI | CCWGG | 1 cut(s) | 205 |
| PspPI | GGNCC | 1 cut(s) | 689 |
| PstI | CTGCAG | 1 cut(s) | 976 |
| PstNI | CAGNNNCTG | 2 cut(s) | 878, 1055 |
| PvuII | CAGCTG | 1 cut(s) | 1052 |
| SaqAI | TTAA | 1 cut(s) | 1008 |
| SatI | GCNGC | 3 cut(s) | 960, 972, 1053 |
| Sau96I | GGNCC | 1 cut(s) | 689 |
| SchI | GAGTC | 3 cut(s) | 350, 802, 989 |
| ScrFI | CCNGG | 1 cut(s) | 207 |
| SduI | GDGCHC | 2 cut(s) | 16, 336 |
| SfaNI | GCATC | 3 cut(s) | 639, 863, 1021 |
| SfcI | CTRYAG | 1 cut(s) | 972 |
| Sse9I | AATT | 7 cut(s) | 33, 57, 366, 540, 903, 1009, 1020 |
| SsiI | CCGC | 2 cut(s) | 40, 920 |
| SspI | AATATT | 2 cut(s) | 385, 747 |
| SspMI | CTAG | 1 cut(s) | 620 |
| StyD4I | CCNGG | 1 cut(s) | 205 |
| StyI | CCWWGG | 1 cut(s) | 297 |
| TaiI | ACGT | 1 cut(s) | 571 |
| TaqI | TCGA | 1 cut(s) | 791 |
| TasI | AATT | 7 cut(s) | 33, 57, 366, 540, 903, 1009, 1020 |
| TfiI | GAWTC | 4 cut(s) | 29, 455, 720, 803 |
| Tru1I | TTAA | 1 cut(s) | 1008 |
| Tru9I | TTAA | 1 cut(s) | 1008 |
| TscAI | CASTG | 5 cut(s) | 16, 138, 341, 427, 864 |
| TseFI | GTSAC | 1 cut(s) | 646 |
| TseI | GCWGC | 3 cut(s) | 959, 971, 1052 |
| Tsp45I | GTSAC | 1 cut(s) | 646 |
| TspDTI | ATGAA | 7 cut(s) | 132, 152, 274, 498, 504, 578, 756 |
| TspRI | CASTG | 5 cut(s) | 16, 138, 341, 427, 864 |
| VneI | GTGCAC | 1 cut(s) | 12 |
| XapI | RAATTY | 1 cut(s) | 366 |
| XceI | RCATGY | 1 cut(s) | 262 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 427, 1009 |
| XmiI | GTMKAC | 1 cut(s) | 1044 |
| XmnI | GAANNNNTTC | 1 cut(s) | 904 |
| XspI | CTAG | 1 cut(s) | 620 |