Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009119

Physical Location & Seq

Genomic Coordinates Reverse (-)

13871827 .. 13876881

Gene Structure 5055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG118900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGAGAGCAGTGCACAGAGGCGATTGGATTCAATTACCCGCCACCTCCTTCTTCCACTTCAATCCAATCATGGTCTTCAAAAGGTGGTGTTATCAAGTAATGGGGGATTGAAGCATGAAGAGGCAGAGCCAGTGGTGATAGGGGGTATGGTGTTGGACATTCATGCCACTCCTTCTGTTCCTGCAAATCCCAGAACCACTACTCCAGGCAAGGTGAGCTACGTATTAGGAGGGGTGGCAAGGAATGTTGCCGAGTGCATGGCCAAGCTGGGAGCAAAGCCCTTCATGATTAGTGCCTTGGGGCTTGACATGGCAGGAAACTTATTGTTGGAGCACTGGAAGTCTGCTGGGCTATCAACTGAAGGAATTTTGAAGCACCAAAATATCGAGACTGCTGTTGTTTGCAGCGTACTTGATGCCACTGGAGAGTTAGCAGCTGCTGTTGCAAGCGTAGAATCTATTGAAAAATTTCTAACACCTGAGTGGATCGAGCAGTTCGGGTGTAATATACGTTCCTCTACAGTGGTGATGGTTGACGCAAACTTGAACCCGTCTGCTCTAAAGTTTTCTTGCCAATTGGCAGCTGAATCTAAAATTCCTGTGTGGTTTGAGCCGGTTTCAGTAGAAAAATCAAGAAGAATCAATTCAGTTGTCAAGTATATAAGTTTTGCTTCTCCCAATGAAGGTGAACTTGTCGCTATGGCAAATACTTTATCTGGCGGAAATGTGTTTTGTCCAATCGAAAGGGAAAGTAGCACAATTAAATATTCAAAAGAAAAGGTGTTTGATGTGCTAAAACCTGCAATCTGGGTTTTGCTTGAGAACGGCATCAAAATAGTTATTGTGACACTTGGTTCGGATGGAGTGTTCTTATGCTCTAAAGGAGGGCCAAGCTTGATGAGAGTTGGTTGTGAGGGAGTCAAACCATATAACTCAAATGAAAGATTATTTAATATTATGACAACAAGTTGTTCTCCAAAACCATTTTTGAGGCTTCAGGTTTCTGAGAGAAGCTCTCTTCTGTTTGCTGTGCATTTTCCTGCACTCCCCGCATCAGTGGTTAGGCTTACAGGGGCTGGCGATTGTTTGGTTGGGGGAACAATTTCTTCTCTTTGTGCAGGCTTAAATATCATGCAAAGTGTGGCAGTTGGTATTGCAGCTTCGAGAGCTGCAGTTGAGTCAGAGACCAATGTGCCTTCCGCATTTAATTTGGCTGCAATTGCAGATGATGCAAAGTCGGTATACTTGGCTGCTAAAGTTATATTCCATCAATCAATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

427

Amino Acids

45.38

Weight (kDa)

7.06

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	45 - 297	1.2e-23	pfkB family carbohydrate kinase
PfkB	PF00294	344 - 395	4.9e-06	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49350
fragaria_vesca	FvH4_2g08380
malus_domestica	MD10G1080400.v1.1
prunus_persica	Prupe.8G101700_v2.0.a1 Prupe.8G101700_v2.0.a1
pyrus_communis	pycom10g06360
rosa_chinensis	RchiOBHm_Chr6g0263461
rosa_laevigata	RLG00000014333 RLG00000014340
rosa_multiflora	Rmu_sc0000565.1_g000042 Rmu_sc0003785.1_g000022
rosa_roxburghii	Rroxscaffold_176G00431090 Rroxscaffold_176G00431100 Rroxscaffold_7G00204170 Rroxscaffold_7G00204180
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh6AG124600 Rh6BG120700 Rh6CG118900 Rh6DG107200
rosa_wichuraiana	Rw6G010690 Rw6G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	808
AccI	GTMKAC	1 cut(s)	1242
AciI	CCGC	4 cut(s)	40, 720, 1050, 1200
AclWI	GGATC	1 cut(s)	494
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	3 cut(s)	366, 467, 594
AcuI	CTGAAG	2 cut(s)	381, 980
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	683
AgsI	TTSAA	8 cut(s)	33, 62, 80, 112, 373, 464, 547, 771
AjnI	CCWGG	1 cut(s)	205
AleI	CACNNNNGTG	1 cut(s)	481
AloI	GAACNNNNNNTCC	4 cut(s)	187, 219, 851, 883
AluBI	AGCT	8 cut(s)	219, 268, 437, 584, 894, 1014, 1160, 1169
AluI	AGCT	8 cut(s)	219, 268, 437, 584, 894, 1014, 1160, 1169
Alw21I	GWGCWC	2 cut(s)	16, 336
Alw26I	GTCTC	2 cut(s)	383, 1178
Alw44I	GTGCAC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	494
AlwNI	CAGNNNCTG	2 cut(s)	440, 1076
AoxI	GGCC	2 cut(s)	261, 887
ApaLI	GTGCAC	1 cut(s)	12
ApeKI	GCWGC	8 cut(s)	405, 434, 437, 581, 1157, 1169, 1214, 1250
ApoI	RAATTY	3 cut(s)	366, 467, 594
ArsI	GACNNNNNNTTYG	2 cut(s)	838, 870
Asp700I	GAANNNNTTC	3 cut(s)	468, 643, 1102
AspS9I	GGNCC	1 cut(s)	887
AsuHPI	GGTGA	4 cut(s)	148, 226, 538, 698
BaeGI	GKGCMC	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	263
BarI	GAAGNNNNNNTAC	2 cut(s)	1144, 1176
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	2 cut(s)	16, 336
BbvI	GCAGC	8 cut(s)	417, 424, 446, 593, 1156, 1169, 1201, 1237
BccI	CCATC	3 cut(s)	523, 854, 1275
BceAI	ACGGC	1 cut(s)	841
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	383, 1178
BfmI	CTRYAG	2 cut(s)	519, 1170
BfuAI	ACCTGC	1 cut(s)	808
BisI	GCNGC	8 cut(s)	406, 435, 438, 582, 1158, 1170, 1215, 1251
BlsI	GCNGC	8 cut(s)	407, 436, 439, 583, 1159, 1171, 1216, 1252
Bme1390I	CCNGG	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	887
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	4 cut(s)	406, 837, 1061, 1219
BpiI	GAAGAC	1 cut(s)	68
BplI	GAGNNNNNCTC	4 cut(s)	998, 1030, 1000, 1032
BpmI	CTGGAG	2 cut(s)	189, 444
BpuEI	CTTGAG	1 cut(s)	839
BsaAI	YACGTR	1 cut(s)	223
BsaI	GGTCTC	1 cut(s)	1178
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	683
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	3 cut(s)	131, 341, 427
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	865
BseLI	CCNNNNNNNGG	1 cut(s)	683
BseMII	CTCAG	2 cut(s)	471, 996
BseNI	ACTGG	3 cut(s)	131, 341, 427
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	8 cut(s)	417, 424, 446, 593, 1156, 1169, 1201, 1237
BseYI	CCCAGC	2 cut(s)	268, 347
BsgI	GTGCAG	2 cut(s)	1026, 1137
BshFI	GGCC	2 cut(s)	263, 889
BsiHKAI	GWGCWC	2 cut(s)	16, 336
BsiSI	CCGG	1 cut(s)	614
BslI	CCNNNNNNNGG	1 cut(s)	683
BsmAI	GTCTC	2 cut(s)	383, 1178
BsnI	GGCC	2 cut(s)	263, 889
Bso31I	GGTCTC	1 cut(s)	1178
Bsp1286I	GDGCHC	2 cut(s)	16, 336
Bsp143I	GATC	1 cut(s)	486
BspACI	CCGC	4 cut(s)	40, 720, 1050, 1200
BspANI	GGCC	2 cut(s)	263, 889
BspCNI	CTCAG	2 cut(s)	472, 997
BspHI	TCATGA	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	1174
BspMI	ACCTGC	1 cut(s)	808
BspPI	GGATC	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	1178
BsrFI	RCCGGY	1 cut(s)	613
BsrI	ACTGG	3 cut(s)	131, 341, 427
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	486
BssNAI	GTATAC	1 cut(s)	1243
BssT1I	CCWWGG	1 cut(s)	297
Bst1107I	GTATAC	1 cut(s)	1243
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	2 cut(s)	114, 1023
BstAPI	GCANNNNNTGC	1 cut(s)	1229
BstBAI	YACGTR	1 cut(s)	223
BstC8I	GCNNGC	3 cut(s)	448, 1078, 1120
BstDEI	CTNAG	2 cut(s)	480, 1005
BstF5I	GGATG	1 cut(s)	865
BstKTI	GATC	1 cut(s)	489
BstMAI	GTCTC	2 cut(s)	383, 1178
BstMBI	GATC	1 cut(s)	486
BstMWI	GCNNNNNNNGC	6 cut(s)	216, 443, 1049, 1166, 1220, 1229
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	2 cut(s)	519, 1170
BstSLI	GKGCMC	1 cut(s)	16
BstSNI	TACGTA	1 cut(s)	223
BstV1I	GCAGC	8 cut(s)	417, 424, 446, 593, 1156, 1169, 1201, 1237
BstV2I	GAAGAC	1 cut(s)	68
BstZ17I	GTATAC	1 cut(s)	1243
BsuRI	GGCC	2 cut(s)	263, 889
BtsCI	GGATG	1 cut(s)	865
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	6 cut(s)	16, 138, 334, 420, 528, 1062
BveI	ACCTGC	1 cut(s)	808
Cac8I	GCNNGC	3 cut(s)	448, 1078, 1120
CaiI	CAGNNNCTG	2 cut(s)	440, 1076
CciI	TCATGA	1 cut(s)	285
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	887
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	7 cut(s)	71, 116, 164, 259, 286, 310, 1132
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	2 cut(s)	480, 1005
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	114, 1023
EarI	CTCTTC	2 cut(s)	114, 1023
EciI	GGCGGA	1 cut(s)	735
Eco105I	TACGTA	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	1178
Eco57I	CTGAAG	2 cut(s)	381, 980
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	7 cut(s)	74, 119, 167, 262, 289, 313, 1135
FalI	AAGNNNNNCTT	4 cut(s)	655, 687, 675, 707
FatI	CATG	7 cut(s)	70, 115, 163, 258, 285, 309, 1131
FauI	CCCGC	2 cut(s)	47, 1057
FblI	GTMKAC	1 cut(s)	1242
Fnu4HI	GCNGC	8 cut(s)	406, 435, 438, 582, 1158, 1170, 1215, 1251
FokI	GGATG	1 cut(s)	872
Fsp4HI	GCNGC	8 cut(s)	406, 435, 438, 582, 1158, 1170, 1215, 1251
GluI	GCNGC	8 cut(s)	406, 435, 438, 582, 1158, 1170, 1215, 1251
GsaI	CCCAGC	2 cut(s)	272, 351
GsuI	CTGGAG	2 cut(s)	189, 444
HaeIII	GGCC	2 cut(s)	263, 889
HapII	CCGG	1 cut(s)	614
HgaI	GACGC	1 cut(s)	545
Hin1II	CATG	7 cut(s)	74, 119, 167, 262, 289, 313, 1135
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HindIII	AAGCTT	1 cut(s)	892
HinfI	GANTC	6 cut(s)	29, 455, 587, 639, 918, 1178
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	4 cut(s)	148, 226, 538, 698
Hpy166II	GTNNAC	4 cut(s)	14, 535, 689, 1243
Hpy188I	TCNGA	3 cut(s)	859, 1006, 1183
Hpy188III	TCNNGA	4 cut(s)	286, 388, 633, 1164
Hpy8I	GTNNAC	4 cut(s)	14, 535, 689, 1243
HpyAV	CCTTC	6 cut(s)	59, 183, 292, 356, 677, 1206
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	2 cut(s)	222, 511
HpyF10VI	GCNNNNNNNGC	6 cut(s)	216, 443, 1049, 1166, 1220, 1229
HpyF3I	CTNAG	2 cut(s)	480, 1005
HpySE526I	ACGT	2 cut(s)	222, 511
Hsp92II	CATG	7 cut(s)	74, 119, 167, 262, 289, 313, 1135
Kzo9I	GATC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	272, 331
Lsp1109I	GCAGC	8 cut(s)	417, 424, 446, 593, 1156, 1169, 1201, 1237
LweI	GCATC	4 cut(s)	406, 837, 1061, 1219
MaeII	ACGT	2 cut(s)	222, 511
MaeIII	GTNAC	1 cut(s)	844
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MboII	GAAGA	6 cut(s)	44, 68, 131, 648, 1010, 1098
MfeI	CAATTG	2 cut(s)	575, 1218
MhlI	GDGCHC	2 cut(s)	16, 336
MlsI	TGGCCA	1 cut(s)	263
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	2 cut(s)	927, 1187
MmeI	TCCRAC	2 cut(s)	135, 309
MnlI	CCTC	8 cut(s)	12, 56, 115, 224, 526, 878, 907, 984
Mox20I	TGGCCA	1 cut(s)	263
MroXI	GAANNNNTTC	3 cut(s)	468, 643, 1102
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	4 cut(s)	762, 951, 1124, 1206
MslI	CAYNNNNRTG	1 cut(s)	481
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	437, 584
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	207
MunI	CAATTG	2 cut(s)	575, 1218
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	6 cut(s)	216, 443, 1049, 1166, 1220, 1229
NdeII	GATC	1 cut(s)	486
NlaIII	CATG	7 cut(s)	74, 119, 167, 262, 289, 313, 1135
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	844
OliI	CACNNNNGTG	1 cut(s)	481
PagI	TCATGA	1 cut(s)	285
PdmI	GAANNNNTTC	3 cut(s)	468, 643, 1102
PfeI	GAWTC	4 cut(s)	29, 455, 587, 639
PkrI	GCNGC	8 cut(s)	407, 436, 439, 583, 1159, 1171, 1216, 1252
PleI	GAGTC	2 cut(s)	926, 1186
PpsI	GAGTC	2 cut(s)	926, 1186
Ppu21I	YACGTR	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	205
PspFI	CCCAGC	2 cut(s)	268, 347
PspGI	CCWGG	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	887
PsrI	GAACNNNNNNTAC	2 cut(s)	496, 528
PstI	CTGCAG	1 cut(s)	1174
PstNI	CAGNNNCTG	2 cut(s)	440, 1076
PvuII	CAGCTG	2 cut(s)	437, 584
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	481
SaqAI	TTAA	4 cut(s)	762, 951, 1124, 1206
SatI	GCNGC	8 cut(s)	406, 435, 438, 582, 1158, 1170, 1215, 1251
Sau3AI	GATC	1 cut(s)	486
Sau96I	GGNCC	1 cut(s)	887
SchI	GAGTC	2 cut(s)	927, 1187
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	16, 336
SfaNI	GCATC	4 cut(s)	406, 837, 1061, 1219
SfcI	CTRYAG	2 cut(s)	519, 1170
SmiMI	CAYNNNNRTG	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
SnaBI	TACGTA	1 cut(s)	223
SsiI	CCGC	4 cut(s)	40, 720, 1050, 1200
SspI	AATATT	2 cut(s)	767, 955
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	2 cut(s)	225, 514
TaqI	TCGA	4 cut(s)	387, 489, 741, 1163
TfiI	GAWTC	4 cut(s)	29, 455, 587, 639
Tru1I	TTAA	4 cut(s)	762, 951, 1124, 1206
Tru9I	TTAA	4 cut(s)	762, 951, 1124, 1206
TscAI	CASTG	6 cut(s)	16, 138, 341, 427, 528, 1062
TseFI	GTSAC	1 cut(s)	844
TseI	GCWGC	8 cut(s)	405, 434, 437, 581, 1157, 1169, 1214, 1250
Tsp45I	GTSAC	1 cut(s)	844
TspDTI	ATGAA	5 cut(s)	132, 152, 274, 696, 954
TspRI	CASTG	6 cut(s)	16, 138, 341, 427, 528, 1062
VneI	GTGCAC	1 cut(s)	12
XapI	RAATTY	3 cut(s)	366, 467, 594
XmiI	GTMKAC	1 cut(s)	1242
XmnI	GAANNNNTTC	3 cut(s)	468, 643, 1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.