Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009119

Physical Location & Seq

Genomic Coordinates Forward (+)

53310163 .. 53318114

Gene Structure 7952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00204180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGAGAGCAGTGCAGAGAGGCGATTGGATTCAATTACCCGCCACCTTCTTCTTCCACTTCAATCCAATCATGGTCTTCAAAAGGTGGTGTTATCAAGTAATGGGGGATTGAAGCATGAAGAGGCAGAGCCAGTGGTGATAGGGGGTATGGTGTTGGACATTCATGCCACTCCTTCTTTCCCTGCAAATCCCAGAACCACTACTCCAGGCAAGGTGAGCTATGTATTAGGAGGGGTGGCAAGGAATGTTGCCGAGTGCATGTCCAAGCTGGGAGCAAAGCCCTTCATGATTAGTGCCTTGGGGCTTGACATGGCAGGAAACTTATTGTTGGAGCACTGGGAGTCTGCTGGGTTATCAACCAAAGGAATTTGGAAGCATCAAAATATCGAGACTGCTGTTGTTTGTAGCATACTTGATGCCAGTGGGGAGTTAGCAGCTGCTGTTGCAAGTGTAGAATCTATTGAAAAATTTCTAACACCTGAGTGGATCAAGCAGTTCGGATGTAATATACGTTCTTCTACAGTGGTGATGATTGACGCAAACTTGAACCCGTCTGCTCTAAAGTCTTCTTGCCAATTGGCAGCTGAATCTAAAATTCCTGTGTGGTTTGAGCCGGTTTCAGTAGAAAAATCAAGAAGAATCAATTCAGTTGTCAAGTATATAAGTTTTGCTTCTCCCAATGAAGATGAGCTTGTCGCTATGGCAAATACTTTATCTGGTAGAAATGCGTTTTGTCCAATTGAAAGGGAAAGTAGCACAAGTAAATGTTCAAAAGAAAAGGTGTTTGATATGCTAAAACCTGCAATCTGGGTTTTGCTTGAGAATGGCATCAAAATAGTTATTGTGACACTTGGTTCGGATGGAGTGTTCTTATGCTCTAAAGGAGGGCCAAGCTTCATGAGAGTTGGTTGTGAGGGAGTCAAACCATATAACTCAAATGAAAGATTATTTAATATTATGACCGCAAGTTCTCCAAAACCATTTTCAAGTCTTCAGGTTTCTGAGAGAAGCTCTTTTCTGTTTGCTGTGCATTTTCCTGCGCTCCCAGCATCAGTGGTTAGGCTTACAGGGGCTGGCGATTGTTTGGTTGGGGGAACAATTTCTTCTCTTTGTGCAGGCTTAAATATCATGCAAAGTGTGGCAGTTGGTATTGCAGCTTCGAAAGCTGCAGTTGAGTCAGAGACCAATGTGCCTTCCGCATTTAATTTGGCTGCAATTGCAGATGATGCAAAGACGGTATACTTGGCTGCTAAAGTTATATTCCATCAATCAATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

426

Amino Acids

45.37

Weight (kDa)

7.06

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	45 - 300	2.2e-23	pfkB family carbohydrate kinase
PfkB	PF00294	343 - 394	5.5e-06	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49350
fragaria_vesca	FvH4_2g08380
malus_domestica	MD10G1080400.v1.1
prunus_persica	Prupe.8G101700_v2.0.a1 Prupe.8G101700_v2.0.a1
pyrus_communis	pycom10g06360
rosa_chinensis	RchiOBHm_Chr6g0263461
rosa_laevigata	RLG00000014333 RLG00000014340
rosa_multiflora	Rmu_sc0000565.1_g000042 Rmu_sc0003785.1_g000022
rosa_roxburghii	Rroxscaffold_176G00431090 Rroxscaffold_176G00431100 Rroxscaffold_7G00204170 Rroxscaffold_7G00204180
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh6AG124600 Rh6BG120700 Rh6CG118900 Rh6DG107200
rosa_wichuraiana	Rw6G010690 Rw6G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	808
AccI	GTMKAC	1 cut(s)	1239
AciI	CCGC	3 cut(s)	40, 963, 1197
AclWI	GGATC	1 cut(s)	494
AcsI	RAATTY	3 cut(s)	366, 467, 594
AcuI	CTGAAG	1 cut(s)	977
AgsI	TTSAA	9 cut(s)	33, 62, 80, 112, 464, 547, 743, 771, 987
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	967, 999
AleI	CACNNNNGTG	1 cut(s)	481
AloI	GAACNNNNNNTCC	4 cut(s)	187, 219, 851, 883
AluBI	AGCT	9 cut(s)	219, 268, 437, 584, 691, 894, 1011, 1157, 1166
AluI	AGCT	9 cut(s)	219, 268, 437, 584, 691, 894, 1011, 1157, 1166
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	383, 1175
AlwI	GGATC	1 cut(s)	494
AlwNI	CAGNNNCTG	2 cut(s)	440, 1073
AoxI	GGCC	1 cut(s)	887
ApeKI	GCWGC	7 cut(s)	434, 437, 581, 1154, 1166, 1211, 1247
ApoI	RAATTY	3 cut(s)	366, 467, 594
ArsI	GACNNNNNNTTYG	2 cut(s)	838, 870
Asp700I	GAANNNNTTC	3 cut(s)	468, 643, 1099
AspLEI	GCGC	1 cut(s)	1042
AspS9I	GGNCC	1 cut(s)	887
AsuHPI	GGTGA	3 cut(s)	148, 226, 538
AsuII	TTCGAA	1 cut(s)	1160
BarI	GAAGNNNNNNTAC	2 cut(s)	1141, 1173
BbsI	GAAGAC	3 cut(s)	68, 558, 983
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	7 cut(s)	424, 446, 593, 1153, 1166, 1198, 1234
BccI	CCATC	2 cut(s)	854, 1272
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	383, 1175
BfmI	CTRYAG	2 cut(s)	519, 1167
BfuAI	ACCTGC	1 cut(s)	808
BisI	GCNGC	7 cut(s)	435, 438, 582, 1155, 1167, 1212, 1248
BlsI	GCNGC	7 cut(s)	436, 439, 583, 1156, 1168, 1213, 1249
Bme1390I	CCNGG	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	887
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	5 cut(s)	385, 406, 837, 1058, 1216
BmuI	ACTGGG	1 cut(s)	346
BpiI	GAAGAC	3 cut(s)	68, 558, 983
BplI	GAGNNNNNCTC	2 cut(s)	995, 1027
BpmI	CTGGAG	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	1160
BpuEI	CTTGAG	1 cut(s)	839
BsaI	GGTCTC	1 cut(s)	1175
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	3 cut(s)	131, 341, 420
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	2 cut(s)	506, 865
BseMII	CTCAG	2 cut(s)	471, 993
BseNI	ACTGG	3 cut(s)	131, 341, 420
BseXI	GCAGC	7 cut(s)	424, 446, 593, 1153, 1166, 1198, 1234
BseYI	CCCAGC	3 cut(s)	268, 347, 1045
BsgI	GTGCAG	2 cut(s)	33, 1134
BshFI	GGCC	1 cut(s)	889
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	614
BsmAI	GTCTC	2 cut(s)	383, 1175
BsnI	GGCC	1 cut(s)	889
Bso31I	GGTCTC	1 cut(s)	1175
Bsp119I	TTCGAA	1 cut(s)	1160
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	1 cut(s)	486
BspACI	CCGC	3 cut(s)	40, 963, 1197
BspANI	GGCC	1 cut(s)	889
BspCNI	CTCAG	2 cut(s)	472, 994
BspHI	TCATGA	2 cut(s)	285, 897
BspMAI	CTGCAG	1 cut(s)	1171
BspMI	ACCTGC	1 cut(s)	808
BspPI	GGATC	1 cut(s)	494
BspT104I	TTCGAA	1 cut(s)	1160
BspTNI	GGTCTC	1 cut(s)	1175
BsrFI	RCCGGY	1 cut(s)	613
BsrI	ACTGG	3 cut(s)	131, 341, 420
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	486
BssNAI	GTATAC	1 cut(s)	1240
BssT1I	CCWWGG	1 cut(s)	297
Bst1107I	GTATAC	1 cut(s)	1240
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	523, 1237
Bst6I	CTCTTC	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	1226
BstBI	TTCGAA	1 cut(s)	1160
BstC8I	GCNNGC	2 cut(s)	1075, 1117
BstDEI	CTNAG	2 cut(s)	480, 1002
BstF5I	GGATG	2 cut(s)	506, 865
BstHHI	GCGC	1 cut(s)	1042
BstKTI	GATC	1 cut(s)	489
BstMAI	GTCTC	2 cut(s)	383, 1175
BstMBI	GATC	1 cut(s)	486
BstMWI	GCNNNNNNNGC	6 cut(s)	216, 443, 1046, 1163, 1217, 1226
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	2 cut(s)	519, 1167
BstV1I	GCAGC	7 cut(s)	424, 446, 593, 1153, 1166, 1198, 1234
BstV2I	GAAGAC	3 cut(s)	68, 558, 983
BstZ17I	GTATAC	1 cut(s)	1240
BsuRI	GGCC	1 cut(s)	889
BtsCI	GGATG	2 cut(s)	506, 865
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	6 cut(s)	16, 138, 334, 427, 528, 1059
BveI	ACCTGC	1 cut(s)	808
Cac8I	GCNNGC	2 cut(s)	1075, 1117
CaiI	CAGNNNCTG	2 cut(s)	440, 1073
CciI	TCATGA	2 cut(s)	285, 897
CfoI	GCGC	1 cut(s)	1042
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	887
CseI	GACGC	1 cut(s)	545
CviAII	CATG	8 cut(s)	71, 116, 164, 259, 286, 310, 898, 1129
DdeI	CTNAG	2 cut(s)	480, 1002
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	1175
Eco57I	CTGAAG	1 cut(s)	977
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	8 cut(s)	74, 119, 167, 262, 289, 313, 901, 1132
FalI	AAGNNNNNCTT	4 cut(s)	655, 687, 675, 707
FatI	CATG	8 cut(s)	70, 115, 163, 258, 285, 309, 897, 1128
FauI	CCCGC	1 cut(s)	47
FblI	GTMKAC	1 cut(s)	1239
Fnu4HI	GCNGC	7 cut(s)	435, 438, 582, 1155, 1167, 1212, 1248
FokI	GGATG	2 cut(s)	513, 872
Fsp4HI	GCNGC	7 cut(s)	435, 438, 582, 1155, 1167, 1212, 1248
GlaI	GCGC	1 cut(s)	1041
GluI	GCNGC	7 cut(s)	435, 438, 582, 1155, 1167, 1212, 1248
GsaI	CCCAGC	3 cut(s)	272, 351, 1049
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	889
HapII	CCGG	1 cut(s)	614
HgaI	GACGC	1 cut(s)	545
HhaI	GCGC	1 cut(s)	1042
Hin1II	CATG	8 cut(s)	74, 119, 167, 262, 289, 313, 901, 1132
Hin6I	GCGC	1 cut(s)	1040
HinP1I	GCGC	1 cut(s)	1040
HindIII	AAGCTT	1 cut(s)	892
HinfI	GANTC	7 cut(s)	29, 341, 455, 587, 639, 918, 1175
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	3 cut(s)	148, 226, 538
Hpy166II	GTNNAC	1 cut(s)	1240
Hpy188I	TCNGA	4 cut(s)	500, 859, 1003, 1180
Hpy188III	TCNNGA	4 cut(s)	286, 388, 633, 898
Hpy8I	GTNNAC	1 cut(s)	1240
HpyAV	CCTTC	4 cut(s)	56, 183, 292, 1203
HpyCH4III	ACNGT	2 cut(s)	523, 1237
HpyCH4IV	ACGT	1 cut(s)	511
HpyF10VI	GCNNNNNNNGC	6 cut(s)	216, 443, 1046, 1163, 1217, 1226
HpyF3I	CTNAG	2 cut(s)	480, 1002
HpySE526I	ACGT	1 cut(s)	511
Hsp92II	CATG	8 cut(s)	74, 119, 167, 262, 289, 313, 901, 1132
HspAI	GCGC	1 cut(s)	1040
Kzo9I	GATC	1 cut(s)	486
LmnI	GCTCC	3 cut(s)	272, 331, 1047
Lsp1109I	GCAGC	7 cut(s)	424, 446, 593, 1153, 1166, 1198, 1234
LweI	GCATC	5 cut(s)	385, 406, 837, 1058, 1216
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	1 cut(s)	844
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MfeI	CAATTG	3 cut(s)	575, 738, 1215
MhlI	GDGCHC	1 cut(s)	336
MlyI	GAGTC	3 cut(s)	350, 927, 1184
MmeI	TCCRAC	2 cut(s)	135, 309
MnlI	CCTC	5 cut(s)	12, 115, 224, 878, 907
MroXI	GAANNNNTTC	3 cut(s)	468, 643, 1099
MseI	TTAA	3 cut(s)	951, 1121, 1203
MslI	CAYNNNNRTG	1 cut(s)	481
MspA1I	CMGCKG	2 cut(s)	437, 584
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	207
MunI	CAATTG	3 cut(s)	575, 738, 1215
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	6 cut(s)	216, 443, 1046, 1163, 1217, 1226
NdeII	GATC	1 cut(s)	486
NlaIII	CATG	8 cut(s)	74, 119, 167, 262, 289, 313, 901, 1132
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	844
NspI	RCATGY	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	1160
OliI	CACNNNNGTG	1 cut(s)	481
PagI	TCATGA	2 cut(s)	285, 897
PdmI	GAANNNNTTC	3 cut(s)	468, 643, 1099
PfeI	GAWTC	4 cut(s)	29, 455, 587, 639
PkrI	GCNGC	7 cut(s)	436, 439, 583, 1156, 1168, 1213, 1249
PleI	GAGTC	3 cut(s)	349, 926, 1183
PpsI	GAGTC	3 cut(s)	349, 926, 1183
Psp6I	CCWGG	1 cut(s)	205
PspFI	CCCAGC	3 cut(s)	268, 347, 1045
PspGI	CCWGG	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	887
PsrI	GAACNNNNNNTAC	2 cut(s)	496, 528
PstI	CTGCAG	1 cut(s)	1171
PstNI	CAGNNNCTG	2 cut(s)	440, 1073
PvuII	CAGCTG	2 cut(s)	437, 584
RseI	CAYNNNNRTG	1 cut(s)	481
SaqAI	TTAA	3 cut(s)	951, 1121, 1203
SatI	GCNGC	7 cut(s)	435, 438, 582, 1155, 1167, 1212, 1248
Sau3AI	GATC	1 cut(s)	486
Sau96I	GGNCC	1 cut(s)	887
SchI	GAGTC	3 cut(s)	350, 927, 1184
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	336
SfaNI	GCATC	5 cut(s)	385, 406, 837, 1058, 1216
SfcI	CTRYAG	2 cut(s)	519, 1167
SfuI	TTCGAA	1 cut(s)	1160
SmiMI	CAYNNNNRTG	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
SsiI	CCGC	3 cut(s)	40, 963, 1197
SspI	AATATT	1 cut(s)	955
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	523, 1237
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	2 cut(s)	387, 1160
TfiI	GAWTC	4 cut(s)	29, 455, 587, 639
Tru1I	TTAA	3 cut(s)	951, 1121, 1203
Tru9I	TTAA	3 cut(s)	951, 1121, 1203
TscAI	CASTG	6 cut(s)	16, 138, 341, 427, 528, 1059
TseFI	GTSAC	1 cut(s)	844
TseI	GCWGC	7 cut(s)	434, 437, 581, 1154, 1166, 1211, 1247
Tsp45I	GTSAC	1 cut(s)	844
TspDTI	ATGAA	6 cut(s)	132, 152, 274, 696, 886, 954
TspRI	CASTG	6 cut(s)	16, 138, 341, 427, 528, 1059
XapI	RAATTY	3 cut(s)	366, 467, 594
XceI	RCATGY	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	1239
XmnI	GAANNNNTTC	3 cut(s)	468, 643, 1099

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.