Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009119

Physical Location & Seq

Genomic Coordinates Forward (+)

53301156 .. 53306220

Gene Structure 5065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00204170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTCAAACTTGACCAAATTCAAGTCCTCATCTCCTTCAGCTTTATTTATTATATGCTTAATTAAACTTCATTCCAAGACAGCAACTAGTTTGTCAAGTAAAATGAACAATAGAATCGAAACATCTCAGTTCTGGCAGTTTTTGGCTGTTAACCAGTTACTTGGCTATTCCTGGTGCTTGTCGGCCACGTGCTTGCAAGAGTTTGAAAAATTGGCACTGCATTGCCTCTTGGTCCTGCAAACGTGCATTGAAAATTCGTCTTCATATTTGAACTCTGGAACACTTTTTGCAGAAGAGAGATCTGGGGTATGGTATTGGACATTCATGCCACTCCTTTTCCTGCAAATCCCAGAACCACTACTCCAGGCAAGATTCCAAATCATGGATTCAATTACCCGCCACCTCCTTCTTCCACTTCAATCCAATCATGGTCTTCAAAAGGTGGTGTTATCAAGTAATGGGGGATTGAAGCATGAAGAGGCAGAGCCAGTGGTGATAGGGGGTATGGTGTTGGACATTCATGCCACTCCTTCTTTCCCTGCAAATCCCAGAACCACTACTCCAGGCAAGCCCGAGCACGACGGAAATCGCCTCTCAATCTTCCAATGGCCATATCTCCCTCCACAGACCTCCGATCGACTTGATTCCAAAAGCATTTTCATTCGTCTTGAAGTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

226

Amino Acids

25.48

Weight (kDa)

7.7

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49350
fragaria_vesca	FvH4_2g08380
malus_domestica	MD10G1080400.v1.1
prunus_persica	Prupe.8G101700_v2.0.a1 Prupe.8G101700_v2.0.a1
pyrus_communis	pycom10g06360
rosa_chinensis	RchiOBHm_Chr6g0263461
rosa_laevigata	RLG00000014333 RLG00000014340
rosa_multiflora	Rmu_sc0000565.1_g000042 Rmu_sc0003785.1_g000022
rosa_roxburghii	Rroxscaffold_176G00431090 Rroxscaffold_176G00431100 Rroxscaffold_7G00204170 Rroxscaffold_7G00204180
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh6AG124600 Rh6BG120700 Rh6CG118900 Rh6DG107200
rosa_wichuraiana	Rw6G010690 Rw6G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	382
AciI	CCGC	1 cut(s)	397
AcoI	YGGCCR	2 cut(s)	183, 608
AcsI	RAATTY	2 cut(s)	17, 253
AcuI	CTGAAG	1 cut(s)	21
AcvI	CACGTG	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	9 cut(s)	22, 206, 251, 271, 390, 419, 437, 469, 671
AhlI	ACTAGT	1 cut(s)	86
AjnI	CCWGG	3 cut(s)	170, 363, 562
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AloI	GAACNNNNNNTCC	4 cut(s)	345, 377, 544, 576
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
Alw21I	GWGCWC	1 cut(s)	579
Ama87I	CYCGRG	1 cut(s)	572
AoxI	GGCC	2 cut(s)	183, 608
ApoI	RAATTY	2 cut(s)	17, 253
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	505
AvaI	CYCGRG	1 cut(s)	572
AvaII	GGWCC	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	610
BbrPI	CACGTG	1 cut(s)	189
BbsI	GAAGAC	2 cut(s)	252, 425
Bbv12I	GWGCWC	1 cut(s)	579
BciT130I	CCWGG	3 cut(s)	172, 365, 564
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	1 cut(s)	87
BglII	AGATCT	1 cut(s)	299
Bme1390I	CCNGG	3 cut(s)	172, 365, 564
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	232
BmrFI	CCNGG	3 cut(s)	172, 365, 564
BpiI	GAAGAC	2 cut(s)	252, 425
BpmI	CTGGAG	2 cut(s)	347, 546
BsaAI	YACGTR	1 cut(s)	189
BsaXI	ACNNNNNCTCC	4 cut(s)	345, 375, 544, 574
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	2 cut(s)	154, 488
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	3 cut(s)	172, 365, 564
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	2 cut(s)	154, 488
Bsh1285I	CGRYCG	1 cut(s)	637
BshFI	GGCC	2 cut(s)	185, 610
BsiEI	CGRYCG	1 cut(s)	637
BsiHKAI	GWGCWC	1 cut(s)	579
BsiHKCI	CYCGRG	1 cut(s)	572
BslI	CCNNNNNNNGG	1 cut(s)	382
BsnI	GGCC	2 cut(s)	185, 610
BsoBI	CYCGRG	1 cut(s)	572
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	2 cut(s)	299, 634
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	2 cut(s)	185, 610
BspCNI	CTCAG	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	154, 488
BssMI	GATC	2 cut(s)	299, 634
Bst2UI	CCWGG	3 cut(s)	172, 365, 564
Bst6I	CTCTTC	2 cut(s)	288, 471
BstBAI	YACGTR	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	194, 569
BstDEI	CTNAG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	302, 637
BstMBI	GATC	2 cut(s)	299, 634
BstMCI	CGRYCG	1 cut(s)	637
BstNI	CCWGG	3 cut(s)	172, 365, 564
BstSCI	CCNGG	3 cut(s)	170, 363, 562
BstV2I	GAAGAC	2 cut(s)	252, 425
BstX2I	RGATCY	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	185, 610
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	2 cut(s)	215, 495
Cac8I	GCNNGC	2 cut(s)	194, 569
Cfr13I	GGNCC	1 cut(s)	232
CviAII	CATG	5 cut(s)	325, 382, 428, 473, 521
CviJI	RGCY	7 cut(s)	41, 146, 165, 185, 487, 571, 610
CviKI_1	RGCY	7 cut(s)	41, 146, 165, 185, 487, 571, 610
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	301, 636
DpnII	GATC	2 cut(s)	299, 634
EaeI	YGGCCR	2 cut(s)	183, 608
Eam1104I	CTCTTC	2 cut(s)	288, 471
EarI	CTCTTC	2 cut(s)	288, 471
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	21
Eco72I	CACGTG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	572
EcoRII	CCWGG	3 cut(s)	170, 363, 562
FaeI	CATG	5 cut(s)	328, 385, 431, 476, 524
FatI	CATG	5 cut(s)	324, 381, 427, 472, 520
FauI	CCCGC	1 cut(s)	404
FspBI	CTAG	1 cut(s)	87
GsuI	CTGGAG	2 cut(s)	347, 546
HaeIII	GGCC	2 cut(s)	185, 610
Hin1II	CATG	5 cut(s)	328, 385, 431, 476, 524
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	4 cut(s)	114, 372, 386, 644
HpaI	GTTAAC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	634
Hpy188III	TCNNGA	2 cut(s)	276, 668
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	3 cut(s)	45, 416, 540
HpyCH4IV	ACGT	2 cut(s)	188, 242
HpyCH4V	TGCA	7 cut(s)	196, 220, 238, 246, 290, 343, 542
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	2 cut(s)	188, 242
Hsp92II	CATG	5 cut(s)	328, 385, 431, 476, 524
KspAI	GTTAAC	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	299, 634
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	2 cut(s)	188, 242
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	2 cut(s)	301, 636
MboI	GATC	2 cut(s)	299, 634
MboII	GAAGA	6 cut(s)	252, 305, 401, 425, 488, 592
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	579
MlsI	TGGCCA	1 cut(s)	610
MluCI	AATT	6 cut(s)	17, 60, 209, 253, 390, 676
MluNI	TGGCCA	1 cut(s)	610
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	7 cut(s)	37, 236, 413, 472, 602, 630, 640
Mox20I	TGGCCA	1 cut(s)	610
MscI	TGGCCA	1 cut(s)	610
MseI	TTAA	4 cut(s)	59, 63, 150, 679
Msp20I	TGGCCA	1 cut(s)	610
MspR9I	CCNGG	3 cut(s)	172, 365, 564
MvaI	CCWGG	3 cut(s)	172, 365, 564
NdeII	GATC	2 cut(s)	299, 634
NlaIII	CATG	5 cut(s)	328, 385, 431, 476, 524
PacI	TTAATTAA	1 cut(s)	63
PfeI	GAWTC	4 cut(s)	114, 372, 386, 644
PflMI	CCANNNNNTGG	1 cut(s)	382
Ple19I	CGATCG	1 cut(s)	637
PmaCI	CACGTG	1 cut(s)	189
PmlI	CACGTG	1 cut(s)	189
Ppu21I	YACGTR	1 cut(s)	189
Psp6I	CCWGG	3 cut(s)	170, 363, 562
PspCI	CACGTG	1 cut(s)	189
PspGI	CCWGG	3 cut(s)	170, 363, 562
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	299
PvuI	CGATCG	1 cut(s)	637
SaqAI	TTAA	4 cut(s)	59, 63, 150, 679
Sau3AI	GATC	2 cut(s)	299, 634
Sau96I	GGNCC	1 cut(s)	232
ScrFI	CCNGG	3 cut(s)	172, 365, 564
SduI	GDGCHC	1 cut(s)	579
SetI	ASST	6 cut(s)	43, 191, 245, 405, 444, 632
SinI	GGWCC	1 cut(s)	232
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	6 cut(s)	17, 60, 209, 253, 390, 676
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	3 cut(s)	170, 363, 562
TaiI	ACGT	2 cut(s)	191, 245
TaqI	TCGA	2 cut(s)	117, 637
TasI	AATT	6 cut(s)	17, 60, 209, 253, 390, 676
TfiI	GAWTC	4 cut(s)	114, 372, 386, 644
Tru1I	TTAA	4 cut(s)	59, 63, 150, 679
Tru9I	TTAA	4 cut(s)	59, 63, 150, 679
TscAI	CASTG	2 cut(s)	222, 495
TspDTI	ATGAA	7 cut(s)	59, 119, 252, 313, 489, 509, 649
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	2 cut(s)	222, 495
Van91I	CCANNNNNTGG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	17, 253
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.