Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009119

Physical Location & Seq

Genomic Coordinates Reverse (-)

18515435 .. 18520851

Gene Structure 5417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G010690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGAGAGCAGTGCACAGAGGCGCTTGGATTCAATTACCCGCCACCTTCTTCTTCCACTTCAATCCAATCATGGCCTTCAAAAGGTGGTGTTATCAAGTAATGGGGGATTGAAGCATGAAGAGGCAGAGCCAGTGGTGATAGGGGGTATGGTGTTGGACATTCATGCCACTCCTTCTTTCCCTGCAAATCCCAGAACCACTACTCCAGGCAAGGTGAGCTATGTATTGGGAGGGGTGGCAAGGAATGTTGCAGAGTGCATGTCCAAGCTGGGAGCAAAGCCATTCATGATTAGTGCCTTGGGGCTTGACATGGCAGGAAACTTATTATTGGAGCACTGGGAGTCTGCTGGGCTATCAACTGAAGGAATTTGGAAAGACCAAAATATCGAGACTGCTGTTGTTTGCAGCATAATTGATTCCAGTGGGGAGTTGGCAACTGCTGTTGCAAGTGTAGAATCTATTGAAAAATTTCTAACACCTGAGTGGATTGAGCGGTTCAGATGCAATATAAATTCTGCTACAGTGGTCATGGTTGACGCAAACTTGAACCCTTCTGCTCTAAAGTCTTCTTGCCAATTGGCAGCAGAATCTAAAGTTCCTGTGTGGTTTGAGCCAGTTTCGGTAGAAAAATCAAGAAGAATCAATTCAGTTGTCAAGTATATAAGTTTTGCTTCTCCCAATGAAGATGAACTTGTTGCTATGGCAAATACTTTATCTGGTGGTAATGTGTTTTCTCCAATTGAAAGGGAAAGTAGCACAAGTAAACGTTCAAAAGAAAAGTTGTTTCATATGCTAAAACCTGCCGTCTGGGTTTTGCTAGAGAATGGCATCAAAATAGTTATTGTGACACTTGGTTCGGATGGAGTGTTCTTATGCTCTAAAGGAGGGCCAAGCTTGATGAGAGTTGGTTGTGATGGAATCAAACCATGTAACTTGAATGAAATATTTTTTAATACTATGACTGCAAGTTGCCCTCCAAAACCATTTTTGAGTCTTCAGGATTCTGAGAGAAGCTCTTTTCTGTTTGCTGTGCATTTTCCTGCGCTTCCTGCATCAGTGGTTAGGCTTACAGGGGCTGGTGATTGTCTGGTTGGGGGAACAATTTCTTCTCTTTGTGCGGGCTTAGATATCATGCAAAGTGTGGCAGTTGGTATTGCAGCTTCCAAAGCTGCAGTTGAGTCAAAGACCAATGTGCCTTCGACATTTAATTTGGCTGCAATTGCAGATGATGCAAGGTTGGTATACGCAGCTGCTGAAGTCGTATTCCATCAATCAATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

427

Amino Acids

45.51

Weight (kDa)

5.96

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	45 - 297	1.1e-25	pfkB family carbohydrate kinase
PfkB	PF00294	344 - 395	2e-06	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49350
fragaria_vesca	FvH4_2g08380
malus_domestica	MD10G1080400.v1.1
prunus_persica	Prupe.8G101700_v2.0.a1 Prupe.8G101700_v2.0.a1
pyrus_communis	pycom10g06360
rosa_chinensis	RchiOBHm_Chr6g0263461
rosa_laevigata	RLG00000014333 RLG00000014340
rosa_multiflora	Rmu_sc0000565.1_g000042 Rmu_sc0003785.1_g000022
rosa_roxburghii	Rroxscaffold_176G00431090 Rroxscaffold_176G00431100 Rroxscaffold_7G00204170 Rroxscaffold_7G00204180
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh6AG124600 Rh6BG120700 Rh6CG118900 Rh6DG107200
rosa_wichuraiana	Rw6G010690 Rw6G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	808
AccBSI	CCGCTC	1 cut(s)	493
AccI	GTMKAC	1 cut(s)	1242
AciI	CCGC	3 cut(s)	40, 493, 1118
AclI	AACGTT	1 cut(s)	766
AcsI	RAATTY	3 cut(s)	366, 467, 511
AcuI	CTGAAG	3 cut(s)	381, 980, 1275
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	9 cut(s)	33, 62, 80, 112, 464, 547, 743, 771, 937
AjnI	CCWGG	1 cut(s)	205
AleI	CACNNNNGTG	1 cut(s)	481
AloI	GAACNNNNNNTCC	4 cut(s)	187, 219, 851, 883
AluBI	AGCT	7 cut(s)	219, 268, 894, 1014, 1160, 1169, 1250
AluI	AGCT	7 cut(s)	219, 268, 894, 1014, 1160, 1169, 1250
Alw21I	GWGCWC	2 cut(s)	16, 336
Alw26I	GTCTC	1 cut(s)	383
Alw44I	GTGCAC	1 cut(s)	12
AlwNI	CAGNNNCTG	2 cut(s)	1076, 1253
AoxI	GGCC	2 cut(s)	73, 887
ApaLI	GTGCAC	1 cut(s)	12
ApeKI	GCWGC	7 cut(s)	405, 581, 1157, 1169, 1214, 1247, 1250
ApoI	RAATTY	3 cut(s)	366, 467, 511
ArsI	GACNNNNNNTTYG	4 cut(s)	838, 870, 1192, 1224
Asp700I	GAANNNNTTC	3 cut(s)	468, 643, 1102
AspLEI	GCGC	2 cut(s)	24, 1045
AspS9I	GGNCC	1 cut(s)	887
AsuHPI	GGTGA	3 cut(s)	148, 226, 1091
BaeGI	GKGCMC	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	1144, 1176
BbsI	GAAGAC	2 cut(s)	558, 986
Bbv12I	GWGCWC	2 cut(s)	16, 336
BbvI	GCAGC	7 cut(s)	417, 593, 1156, 1169, 1201, 1237, 1259
BccI	CCATC	3 cut(s)	854, 908, 1275
BceAI	ACGGC	1 cut(s)	788
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	1 cut(s)	818
BfmI	CTRYAG	2 cut(s)	519, 1170
BfoI	RGCGCY	1 cut(s)	25
BfuAI	ACCTGC	1 cut(s)	808
BisI	GCNGC	7 cut(s)	406, 582, 1158, 1170, 1215, 1248, 1251
BlsI	GCNGC	7 cut(s)	407, 583, 1159, 1171, 1216, 1249, 1252
Bme1390I	CCNGG	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	887
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	4 cut(s)	491, 837, 1061, 1219
BmuI	ACTGGG	1 cut(s)	346
BpiI	GAAGAC	2 cut(s)	558, 986
BplI	GAGNNNNNCTC	2 cut(s)	998, 1030
BpmI	CTGGAG	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	4 cut(s)	131, 341, 420, 614
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	865
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	471, 996
BseNI	ACTGG	4 cut(s)	131, 341, 420, 614
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	7 cut(s)	417, 593, 1156, 1169, 1201, 1237, 1259
BseYI	CCCAGC	2 cut(s)	268, 347
BshFI	GGCC	2 cut(s)	75, 889
BsiHKAI	GWGCWC	2 cut(s)	16, 336
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	383
BsnI	GGCC	2 cut(s)	75, 889
Bsp1286I	GDGCHC	2 cut(s)	16, 336
BspACI	CCGC	3 cut(s)	40, 493, 1118
BspANI	GGCC	2 cut(s)	75, 889
BspCNI	CTCAG	2 cut(s)	472, 997
BspHI	TCATGA	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	1174
BspMI	ACCTGC	1 cut(s)	808
BsrBI	CCGCTC	1 cut(s)	493
BsrI	ACTGG	4 cut(s)	131, 341, 420, 614
BssECI	CCNNGG	1 cut(s)	297
BssNAI	GTATAC	1 cut(s)	1243
BssT1I	CCWWGG	1 cut(s)	297
Bst1107I	GTATAC	1 cut(s)	1243
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	1229
BstC8I	GCNNGC	1 cut(s)	1120
BstDEI	CTNAG	3 cut(s)	480, 1005, 1123
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	865
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	2 cut(s)	24, 1045
BstMAI	GTCTC	1 cut(s)	383
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 1049, 1166, 1220, 1229
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	2 cut(s)	519, 1170
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	7 cut(s)	417, 593, 1156, 1169, 1201, 1237, 1259
BstV2I	GAAGAC	2 cut(s)	558, 986
BstZ17I	GTATAC	1 cut(s)	1243
BsuRI	GGCC	2 cut(s)	75, 889
BtsCI	GGATG	1 cut(s)	865
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	6 cut(s)	16, 138, 334, 427, 528, 1062
BveI	ACCTGC	1 cut(s)	808
Cac8I	GCNNGC	1 cut(s)	1120
CaiI	CAGNNNCTG	2 cut(s)	1076, 1253
CciI	TCATGA	1 cut(s)	285
CfoI	GCGC	2 cut(s)	24, 1045
Cfr13I	GGNCC	1 cut(s)	887
CseI	GACGC	1 cut(s)	545
CviAII	CATG	9 cut(s)	71, 116, 164, 259, 286, 310, 529, 927, 1132
DdeI	CTNAG	3 cut(s)	480, 1005, 1123
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	1129
Eco57I	CTGAAG	3 cut(s)	381, 980, 1275
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	205
EcoRV	GATATC	1 cut(s)	1129
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	9 cut(s)	74, 119, 167, 262, 289, 313, 532, 930, 1135
FalI	AAGNNNNNCTT	4 cut(s)	655, 687, 675, 707
FatI	CATG	9 cut(s)	70, 115, 163, 258, 285, 309, 528, 926, 1131
FauI	CCCGC	2 cut(s)	47, 1111
FauNDI	CATATG	1 cut(s)	789
FblI	GTMKAC	1 cut(s)	1242
Fnu4HI	GCNGC	7 cut(s)	406, 582, 1158, 1170, 1215, 1248, 1251
FokI	GGATG	1 cut(s)	872
Fsp4HI	GCNGC	7 cut(s)	406, 582, 1158, 1170, 1215, 1248, 1251
FspBI	CTAG	1 cut(s)	818
GlaI	GCGC	2 cut(s)	23, 1044
GluI	GCNGC	7 cut(s)	406, 582, 1158, 1170, 1215, 1248, 1251
GsaI	CCCAGC	2 cut(s)	272, 351
GsuI	CTGGAG	1 cut(s)	189
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	2 cut(s)	75, 889
HgaI	GACGC	1 cut(s)	545
HhaI	GCGC	2 cut(s)	24, 1045
Hin1II	CATG	9 cut(s)	74, 119, 167, 262, 289, 313, 532, 930, 1135
Hin6I	GCGC	2 cut(s)	22, 1043
HinP1I	GCGC	2 cut(s)	22, 1043
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HindIII	AAGCTT	1 cut(s)	892
HphI	GGTGA	3 cut(s)	148, 226, 1091
Hpy166II	GTNNAC	4 cut(s)	14, 535, 764, 1243
Hpy188I	TCNGA	3 cut(s)	500, 859, 1006
Hpy188III	TCNNGA	4 cut(s)	286, 388, 633, 998
Hpy8I	GTNNAC	4 cut(s)	14, 535, 764, 1243
HpyAV	CCTTC	6 cut(s)	56, 86, 183, 356, 561, 1206
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	1 cut(s)	766
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 1049, 1166, 1220, 1229
HpyF3I	CTNAG	3 cut(s)	480, 1005, 1123
HpySE526I	ACGT	1 cut(s)	766
Hsp92II	CATG	9 cut(s)	74, 119, 167, 262, 289, 313, 532, 930, 1135
HspAI	GCGC	2 cut(s)	22, 1043
LmnI	GCTCC	2 cut(s)	272, 331
Lsp1109I	GCAGC	7 cut(s)	417, 593, 1156, 1169, 1201, 1237, 1259
LweI	GCATC	4 cut(s)	491, 837, 1061, 1219
MaeI	CTAG	1 cut(s)	818
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	2 cut(s)	844, 929
MbiI	CCGCTC	1 cut(s)	493
MboII	GAAGA	8 cut(s)	41, 44, 131, 558, 648, 695, 986, 1098
MfeI	CAATTG	3 cut(s)	575, 738, 1218
MhlI	GDGCHC	2 cut(s)	16, 336
MlyI	GAGTC	3 cut(s)	350, 1000, 1187
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	12, 115, 224, 878, 984
MroXI	GAANNNNTTC	3 cut(s)	468, 643, 1102
MseI	TTAA	2 cut(s)	951, 1206
MslI	CAYNNNNRTG	1 cut(s)	481
MspA1I	CMGCKG	1 cut(s)	1250
MspR9I	CCNGG	1 cut(s)	207
MunI	CAATTG	3 cut(s)	575, 738, 1218
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	5 cut(s)	216, 1049, 1166, 1220, 1229
NdeI	CATATG	1 cut(s)	789
NlaIII	CATG	9 cut(s)	74, 119, 167, 262, 289, 313, 532, 930, 1135
NmuCI	GTSAC	1 cut(s)	844
NspI	RCATGY	1 cut(s)	262
OliI	CACNNNNGTG	1 cut(s)	481
PagI	TCATGA	1 cut(s)	285
PdmI	GAANNNNTTC	3 cut(s)	468, 643, 1102
PfeI	GAWTC	7 cut(s)	29, 416, 455, 587, 639, 918, 1001
PkrI	GCNGC	7 cut(s)	407, 583, 1159, 1171, 1216, 1249, 1252
PleI	GAGTC	3 cut(s)	349, 999, 1186
PpsI	GAGTC	3 cut(s)	349, 999, 1186
Psp1406I	AACGTT	1 cut(s)	766
Psp6I	CCWGG	1 cut(s)	205
PspFI	CCCAGC	2 cut(s)	268, 347
PspGI	CCWGG	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	887
PstI	CTGCAG	1 cut(s)	1174
PstNI	CAGNNNCTG	2 cut(s)	1076, 1253
PvuII	CAGCTG	1 cut(s)	1250
RseI	CAYNNNNRTG	1 cut(s)	481
SaqAI	TTAA	2 cut(s)	951, 1206
SatI	GCNGC	7 cut(s)	406, 582, 1158, 1170, 1215, 1248, 1251
Sau96I	GGNCC	1 cut(s)	887
SchI	GAGTC	3 cut(s)	350, 1000, 1187
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	16, 336
SfaNI	GCATC	4 cut(s)	491, 837, 1061, 1219
SfcI	CTRYAG	2 cut(s)	519, 1170
SmiMI	CAYNNNNRTG	1 cut(s)	481
SsiI	CCGC	3 cut(s)	40, 493, 1118
SspI	AATATT	1 cut(s)	945
SspMI	CTAG	1 cut(s)	818
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	2 cut(s)	387, 1199
TfiI	GAWTC	7 cut(s)	29, 416, 455, 587, 639, 918, 1001
Tru1I	TTAA	2 cut(s)	951, 1206
Tru9I	TTAA	2 cut(s)	951, 1206
TscAI	CASTG	6 cut(s)	16, 138, 341, 427, 528, 1062
TseFI	GTSAC	1 cut(s)	844
TseI	GCWGC	7 cut(s)	405, 581, 1157, 1169, 1214, 1247, 1250
Tsp45I	GTSAC	1 cut(s)	844
TspDTI	ATGAA	7 cut(s)	132, 152, 274, 696, 702, 776, 954
TspRI	CASTG	6 cut(s)	16, 138, 341, 427, 528, 1062
VneI	GTGCAC	1 cut(s)	12
XagI	CCTNNNNNAGG	1 cut(s)	80
XapI	RAATTY	3 cut(s)	366, 467, 511
XceI	RCATGY	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	1242
XmnI	GAANNNNTTC	3 cut(s)	468, 643, 1102
XspI	CTAG	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.