Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009119

Physical Location & Seq

Genomic Coordinates Reverse (-)

18877978 .. 18883381

Gene Structure 5404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G010840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGAGAGCAGTGCACAGAGGCGCTTGGATTCAATTACCCGCCACCTTCTTCTTCCACTTCAATCCAATCATGGCCTTCAAAAGGTGGTGTTATCAAGTAATGGGGGATTGAAGCATGAAGAGGCAGAGCCAGTGGTGATAGGGGGTATGGTGTTGGACATTCATGCCACTCCTTCTTTCCCTGCAAATCCCAGAACCACTACTCCAGGCAAGGTGAGCTATGTATTGGGAGGGGTGGCAAGGAATGTTGCCGAGTGCATGTCCAAGCTGGGAGCAAAGCCATTCATGATTAGTGCCTTGGGGCTTGACATGGCAGGAAACTTATTATTGGAGCACTGGGAGTCTGCTGGGCTATCAACTGAAGGAATTTGGAAAGACCAAAATATCGAGACTGCTGTTGTTTGCAGCATAATTGATTCCAGTGGGGAGTTGGCAACTGCTGTTGCAAGTGTAGAATCTATTATGCAATATAATTCTGCTACAGTGGTCATGGTTGACGCAAACTTGAACCCTTCTGCTCTAAAGTCTTCTTGCCAATTGGCAGCAGAATCTAAAGTTCCTGTGTGGTTTGAGCCGGTTTCGGTAGAAAAATCAAGAAGAATCAATTCAGTTGTCAAGTATATAAGTTTTGCTTCTCCCAATGAAGATGAACTTGTTGCTATGGCAAATACTTTATCTGGTGGTAATGTGTTTTCTCCAATTGAAAGGGAAAGTAGCACAAGTAAACGTTCAAAAGAAAAGTTGTTTCATATGCTAAAACCTGCAGTCTGGGTTTTGCTAGAGAATGGCATCAAAATAGTTATTGTGACACTTGGTTCGGATGGAGTGTTCTTATGCTCTAAAGGAGGGCCAAGCTTGATGAGAGTTGGTTGTGATGGAATCAAACCATGTAACTTGAATGAAATATTTTTTAATACTATGACTGCAAGTTGTCCTCCAAAACCATTTTTGAGTCTTCAGGATTCTGAGAGAAGCTCTTTTCTGTTTGCTGTGCATTTTCCTGCGCTTCCTGCATCAGTGGTTAGGCTTACAGGGGCTGGTGATTGTCTGGTTGGGGGAACAATTTCTTCTCTTTGTGCGGGCTTAGATATCATGCAAAGTGTGGCAGTTGGTATTGCAGCTTCCAAAGCTGCAGTTGAGTCAAAGACCAATGTGCCTTCCACATTTAATTTGGCTGCAATTGCAGATGATGCAAGGTTGGTATACTCAGCTGCTGAAGTTGTATTCCATCAGTCAATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

414

Amino Acids

43.88

Weight (kDa)

5.94

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	45 - 284	1.1e-22	pfkB family carbohydrate kinase
PfkB	PF00294	331 - 382	2e-06	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49350
fragaria_vesca	FvH4_2g08380
malus_domestica	MD10G1080400.v1.1
prunus_persica	Prupe.8G101700_v2.0.a1 Prupe.8G101700_v2.0.a1
pyrus_communis	pycom10g06360
rosa_chinensis	RchiOBHm_Chr6g0263461
rosa_laevigata	RLG00000014333 RLG00000014340
rosa_multiflora	Rmu_sc0000565.1_g000042 Rmu_sc0003785.1_g000022
rosa_roxburghii	Rroxscaffold_176G00431090 Rroxscaffold_176G00431100 Rroxscaffold_7G00204170 Rroxscaffold_7G00204180
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh6AG124600 Rh6BG120700 Rh6CG118900 Rh6DG107200
rosa_wichuraiana	Rw6G010690 Rw6G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	769
AccI	GTMKAC	1 cut(s)	1203
AciI	CCGC	2 cut(s)	40, 1079
AclI	AACGTT	1 cut(s)	727
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	3 cut(s)	381, 941, 1236
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	8 cut(s)	33, 62, 80, 112, 508, 704, 732, 898
AjnI	CCWGG	1 cut(s)	205
AloI	GAACNNNNNNTCC	4 cut(s)	187, 219, 812, 844
AluBI	AGCT	7 cut(s)	219, 268, 855, 975, 1121, 1130, 1211
AluI	AGCT	7 cut(s)	219, 268, 855, 975, 1121, 1130, 1211
Alw21I	GWGCWC	2 cut(s)	16, 336
Alw26I	GTCTC	1 cut(s)	383
Alw44I	GTGCAC	1 cut(s)	12
AlwNI	CAGNNNCTG	2 cut(s)	1037, 1214
AoxI	GGCC	2 cut(s)	73, 848
ApaLI	GTGCAC	1 cut(s)	12
ApeKI	GCWGC	6 cut(s)	405, 542, 1118, 1130, 1175, 1211
ApoI	RAATTY	1 cut(s)	366
ArsI	GACNNNNNNTTYG	2 cut(s)	799, 831
Asp700I	GAANNNNTTC	2 cut(s)	604, 1063
AspLEI	GCGC	2 cut(s)	24, 1006
AspS9I	GGNCC	1 cut(s)	848
AsuHPI	GGTGA	3 cut(s)	148, 226, 1052
BaeGI	GKGCMC	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	1105, 1137
BbsI	GAAGAC	2 cut(s)	519, 947
Bbv12I	GWGCWC	2 cut(s)	16, 336
BbvI	GCAGC	6 cut(s)	417, 554, 1117, 1130, 1162, 1198
BccI	CCATC	3 cut(s)	815, 869, 1236
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	1 cut(s)	779
BfmI	CTRYAG	3 cut(s)	480, 762, 1131
BfoI	RGCGCY	1 cut(s)	25
BfuAI	ACCTGC	1 cut(s)	769
BisI	GCNGC	6 cut(s)	406, 543, 1119, 1131, 1176, 1212
BlsI	GCNGC	6 cut(s)	407, 544, 1120, 1132, 1177, 1213
Bme1390I	CCNGG	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	848
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	3 cut(s)	798, 1022, 1180
BmuI	ACTGGG	1 cut(s)	346
BpiI	GAAGAC	2 cut(s)	519, 947
BplI	GAGNNNNNCTC	2 cut(s)	959, 991
BpmI	CTGGAG	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	574
Bse1I	ACTGG	3 cut(s)	131, 341, 420
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	826
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	957, 1221
BseNI	ACTGG	3 cut(s)	131, 341, 420
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	6 cut(s)	417, 554, 1117, 1130, 1162, 1198
BseYI	CCCAGC	2 cut(s)	268, 347
BshFI	GGCC	2 cut(s)	75, 850
BsiHKAI	GWGCWC	2 cut(s)	16, 336
BsiSI	CCGG	1 cut(s)	575
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	383
BsnI	GGCC	2 cut(s)	75, 850
Bsp1286I	GDGCHC	2 cut(s)	16, 336
BspACI	CCGC	2 cut(s)	40, 1079
BspANI	GGCC	2 cut(s)	75, 850
BspCNI	CTCAG	2 cut(s)	958, 1220
BspHI	TCATGA	1 cut(s)	285
BspMAI	CTGCAG	2 cut(s)	766, 1135
BspMI	ACCTGC	1 cut(s)	769
BsrFI	RCCGGY	1 cut(s)	574
BsrI	ACTGG	3 cut(s)	131, 341, 420
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	1 cut(s)	297
BssNAI	GTATAC	1 cut(s)	1204
BssT1I	CCWWGG	1 cut(s)	297
Bst1107I	GTATAC	1 cut(s)	1204
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	1190
BstC8I	GCNNGC	1 cut(s)	1081
BstDEI	CTNAG	3 cut(s)	966, 1084, 1207
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	826
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	2 cut(s)	24, 1006
BstMAI	GTCTC	1 cut(s)	383
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 1010, 1127, 1181, 1190
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	3 cut(s)	480, 762, 1131
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	6 cut(s)	417, 554, 1117, 1130, 1162, 1198
BstV2I	GAAGAC	2 cut(s)	519, 947
BstZ17I	GTATAC	1 cut(s)	1204
BsuRI	GGCC	2 cut(s)	75, 850
BtsCI	GGATG	1 cut(s)	826
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	6 cut(s)	16, 138, 334, 427, 489, 1023
BveI	ACCTGC	1 cut(s)	769
Cac8I	GCNNGC	1 cut(s)	1081
CaiI	CAGNNNCTG	2 cut(s)	1037, 1214
CciI	TCATGA	1 cut(s)	285
CfoI	GCGC	2 cut(s)	24, 1006
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	848
CseI	GACGC	1 cut(s)	506
CviAII	CATG	9 cut(s)	71, 116, 164, 259, 286, 310, 490, 888, 1093
DdeI	CTNAG	3 cut(s)	966, 1084, 1207
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	1090
Eco57I	CTGAAG	3 cut(s)	381, 941, 1236
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	205
EcoRV	GATATC	1 cut(s)	1090
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	9 cut(s)	74, 119, 167, 262, 289, 313, 493, 891, 1096
FalI	AAGNNNNNCTT	4 cut(s)	616, 648, 636, 668
FatI	CATG	9 cut(s)	70, 115, 163, 258, 285, 309, 489, 887, 1092
FauI	CCCGC	2 cut(s)	47, 1072
FauNDI	CATATG	1 cut(s)	750
FblI	GTMKAC	1 cut(s)	1203
Fnu4HI	GCNGC	6 cut(s)	406, 543, 1119, 1131, 1176, 1212
FokI	GGATG	1 cut(s)	833
Fsp4HI	GCNGC	6 cut(s)	406, 543, 1119, 1131, 1176, 1212
FspBI	CTAG	1 cut(s)	779
GlaI	GCGC	2 cut(s)	23, 1005
GluI	GCNGC	6 cut(s)	406, 543, 1119, 1131, 1176, 1212
GsaI	CCCAGC	2 cut(s)	272, 351
GsuI	CTGGAG	1 cut(s)	189
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	2 cut(s)	75, 850
HapII	CCGG	1 cut(s)	575
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	2 cut(s)	24, 1006
Hin1II	CATG	9 cut(s)	74, 119, 167, 262, 289, 313, 493, 891, 1096
Hin6I	GCGC	2 cut(s)	22, 1004
HinP1I	GCGC	2 cut(s)	22, 1004
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	853
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	3 cut(s)	148, 226, 1052
Hpy166II	GTNNAC	4 cut(s)	14, 496, 725, 1204
Hpy188I	TCNGA	2 cut(s)	820, 967
Hpy188III	TCNNGA	4 cut(s)	286, 388, 594, 959
Hpy8I	GTNNAC	4 cut(s)	14, 496, 725, 1204
HpyAV	CCTTC	6 cut(s)	56, 86, 183, 356, 522, 1167
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	1 cut(s)	727
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 1010, 1127, 1181, 1190
HpyF3I	CTNAG	3 cut(s)	966, 1084, 1207
HpySE526I	ACGT	1 cut(s)	727
Hsp92II	CATG	9 cut(s)	74, 119, 167, 262, 289, 313, 493, 891, 1096
HspAI	GCGC	2 cut(s)	22, 1004
LmnI	GCTCC	2 cut(s)	272, 331
Lsp1109I	GCAGC	6 cut(s)	417, 554, 1117, 1130, 1162, 1198
LweI	GCATC	3 cut(s)	798, 1022, 1180
MaeI	CTAG	1 cut(s)	779
MaeII	ACGT	1 cut(s)	727
MaeIII	GTNAC	2 cut(s)	805, 890
MboII	GAAGA	8 cut(s)	41, 44, 131, 519, 609, 656, 947, 1059
MfeI	CAATTG	3 cut(s)	536, 699, 1179
MhlI	GDGCHC	2 cut(s)	16, 336
MlyI	GAGTC	3 cut(s)	350, 961, 1148
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	12, 115, 224, 839, 945
MroXI	GAANNNNTTC	2 cut(s)	604, 1063
MseI	TTAA	2 cut(s)	912, 1167
MspA1I	CMGCKG	1 cut(s)	1211
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	1 cut(s)	207
MunI	CAATTG	3 cut(s)	536, 699, 1179
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	5 cut(s)	216, 1010, 1127, 1181, 1190
NdeI	CATATG	1 cut(s)	750
NlaIII	CATG	9 cut(s)	74, 119, 167, 262, 289, 313, 493, 891, 1096
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	805
NspI	RCATGY	1 cut(s)	262
PagI	TCATGA	1 cut(s)	285
PdmI	GAANNNNTTC	2 cut(s)	604, 1063
PfeI	GAWTC	7 cut(s)	29, 416, 455, 548, 600, 879, 962
PkrI	GCNGC	6 cut(s)	407, 544, 1120, 1132, 1177, 1213
PleI	GAGTC	3 cut(s)	349, 960, 1147
PpsI	GAGTC	3 cut(s)	349, 960, 1147
Psp1406I	AACGTT	1 cut(s)	727
Psp6I	CCWGG	1 cut(s)	205
PspFI	CCCAGC	2 cut(s)	268, 347
PspGI	CCWGG	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	848
PstI	CTGCAG	2 cut(s)	766, 1135
PstNI	CAGNNNCTG	2 cut(s)	1037, 1214
PvuII	CAGCTG	1 cut(s)	1211
SaqAI	TTAA	2 cut(s)	912, 1167
SatI	GCNGC	6 cut(s)	406, 543, 1119, 1131, 1176, 1212
Sau96I	GGNCC	1 cut(s)	848
SchI	GAGTC	3 cut(s)	350, 961, 1148
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	16, 336
SfaNI	GCATC	3 cut(s)	798, 1022, 1180
SfcI	CTRYAG	3 cut(s)	480, 762, 1131
SsiI	CCGC	2 cut(s)	40, 1079
SspI	AATATT	1 cut(s)	906
SspMI	CTAG	1 cut(s)	779
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	1 cut(s)	387
TfiI	GAWTC	7 cut(s)	29, 416, 455, 548, 600, 879, 962
Tru1I	TTAA	2 cut(s)	912, 1167
Tru9I	TTAA	2 cut(s)	912, 1167
TscAI	CASTG	6 cut(s)	16, 138, 341, 427, 489, 1023
TseFI	GTSAC	1 cut(s)	805
TseI	GCWGC	6 cut(s)	405, 542, 1118, 1130, 1175, 1211
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	7 cut(s)	132, 152, 274, 657, 663, 737, 915
TspRI	CASTG	6 cut(s)	16, 138, 341, 427, 489, 1023
VneI	GTGCAC	1 cut(s)	12
XagI	CCTNNNNNAGG	1 cut(s)	80
XapI	RAATTY	1 cut(s)	366
XceI	RCATGY	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	2 cut(s)	427, 1168
XmiI	GTMKAC	1 cut(s)	1203
XmnI	GAANNNNTTC	2 cut(s)	604, 1063
XspI	CTAG	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.