Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000176

Orthogroup ID

OG0009119

Physical Location & Seq

Genomic Coordinates Reverse (-)

265952 .. 289298

Gene Structure 23347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_176G00431100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAAACTTATTCGAGGTGCATTTCCTTTCAAGCTACATTTAAAAAGAACATTCATCACAATAATACTTCTGAAATCCCGCAACAATTGGATTCTGAGTACACGTACACAGTAATACACATGCACACTTATTTGACTCATCCAAGTCCACCATATGACCAAAGCCACAACTTCAAGAAGATAACTATGTTTACGAAAAGAGAGAGACTTTCGTACGGTACCTGCATCACGTGGCAGTGCAGCGGCCCAATCAGAATTGAATTTTCTCACCACCAATACTTGGGTGGTGGTATCACGATCCTCTCGGATACTAACACATGTGAAATAAGGGGTATGGTATTGGACATTCATGCCACTCCTTTTCCTGCAAATCCCAGAACCACTACTCCAGGCAAGGTGGTGTTATCAAGTAATGGGGGATTGAAGCATGAAGAGGCAGAGCCAGTGGTGATAGGGGGTATGGTGTTGGACATTCATGCCACTCCTTTCCCTGCAAATCCCAGAACCACTACTCCAGGCAAGGTTCCAGATAGTATATCCAGCATTGCCATCTTTGTTGGTTCGTCGGATCCGTCGGCTTCTAAGGATCGCAGCTATGTGGAACCCACTATACTGGATGCCACAAAAAACTTGGTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.58

Weight (kDa)

6.82

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49350
fragaria_vesca	FvH4_2g08380
malus_domestica	MD10G1080400.v1.1
prunus_persica	Prupe.8G101700_v2.0.a1 Prupe.8G101700_v2.0.a1
pyrus_communis	pycom10g06360
rosa_chinensis	RchiOBHm_Chr6g0263461
rosa_laevigata	RLG00000014333 RLG00000014340
rosa_multiflora	Rmu_sc0000565.1_g000042 Rmu_sc0003785.1_g000022
rosa_roxburghii	Rroxscaffold_176G00431090 Rroxscaffold_176G00431100 Rroxscaffold_7G00204170 Rroxscaffold_7G00204180
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh6AG124600 Rh6BG120700 Rh6CG118900 Rh6DG107200
rosa_wichuraiana	Rw6G010690 Rw6G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	230
Acc65I	GGTACC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	280
AciI	CCGC	2 cut(s)	80, 243
AclWI	GGATC	4 cut(s)	292, 563, 576, 594
AcsI	RAATTY	1 cut(s)	260
AcvI	CACGTG	1 cut(s)	231
AfaI	GTAC	4 cut(s)	101, 107, 215, 220
AfiI	CCNNNNNNNGG	1 cut(s)	280
AflIII	ACRYGT	2 cut(s)	102, 317
AgsI	TTSAA	4 cut(s)	32, 175, 260, 424
AjnI	CCWGG	2 cut(s)	388, 514
AloI	GAACNNNNNNTCC	4 cut(s)	370, 402, 496, 528
AluBI	AGCT	2 cut(s)	35, 594
AluI	AGCT	2 cut(s)	35, 594
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	4 cut(s)	292, 563, 576, 594
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	240, 591
ApoI	RAATTY	1 cut(s)	260
Asp718I	GGTACC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	260, 460
BamHI	GGATCC	1 cut(s)	568
BanI	GGYRCC	1 cut(s)	218
BbrPI	CACGTG	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	252, 603
BccI	CCATC	1 cut(s)	557
BciT130I	CCWGG	2 cut(s)	390, 516
BciVI	GTATCC	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	3 cut(s)	241, 244, 592
BlsI	GCNGC	3 cut(s)	242, 245, 593
Bme1390I	CCNGG	2 cut(s)	390, 516
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	4 cut(s)	220, 525, 570, 603
BmrFI	CCNGG	2 cut(s)	390, 516
BmsI	GCATC	2 cut(s)	234, 607
BpmI	CTGGAG	2 cut(s)	372, 498
BsaAI	YACGTR	2 cut(s)	105, 231
BsaXI	ACNNNNNCTCC	4 cut(s)	370, 400, 496, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	443, 618
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	390, 516
BseGI	GGATG	2 cut(s)	139, 622
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	443, 618
BseXI	GCAGC	2 cut(s)	252, 603
BsgI	GTGCAG	1 cut(s)	259
BshFI	GGCC	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	218
BsiWI	CGTACG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	246
Bsp143I	GATC	3 cut(s)	297, 568, 586
BspACI	CCGC	2 cut(s)	80, 243
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	88
BspHI	TCATGA	1 cut(s)	638
BspLI	GGNNCC	4 cut(s)	220, 525, 570, 603
BspMI	ACCTGC	1 cut(s)	230
BspPI	GGATC	4 cut(s)	292, 563, 576, 594
BspT107I	GGYRCC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	543
BsrI	ACTGG	2 cut(s)	443, 618
BssMI	GATC	3 cut(s)	297, 568, 586
Bst2UI	CCWGG	2 cut(s)	390, 516
Bst4CI	ACNGT	2 cut(s)	112, 218
Bst6I	CTCTTC	1 cut(s)	426
BstBAI	YACGTR	2 cut(s)	105, 231
BstDEI	CTNAG	2 cut(s)	96, 582
BstF5I	GGATG	2 cut(s)	139, 622
BstKTI	GATC	3 cut(s)	300, 571, 589
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	3 cut(s)	297, 568, 586
BstNI	CCWGG	2 cut(s)	390, 516
BstNSI	RCATGY	2 cut(s)	124, 321
BstSCI	CCNGG	2 cut(s)	388, 514
BstV1I	GCAGC	2 cut(s)	252, 603
BstX2I	RGATCY	1 cut(s)	568
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	568
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	139, 622
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	242, 450
BveI	ACCTGC	1 cut(s)	230
CciI	TCATGA	1 cut(s)	638
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	4 cut(s)	100, 106, 214, 219
CviAII	CATG	6 cut(s)	121, 318, 350, 428, 476, 639
CviJI	RGCY	6 cut(s)	35, 165, 246, 442, 578, 594
CviKI_1	RGCY	6 cut(s)	35, 165, 246, 442, 578, 594
CviQI	GTAC	4 cut(s)	100, 106, 214, 219
DdeI	CTNAG	2 cut(s)	96, 582
DpnI	GATC	3 cut(s)	299, 570, 588
DpnII	GATC	3 cut(s)	297, 568, 586
DraI	TTTAAA	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco72I	CACGTG	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	388, 514
FaeI	CATG	6 cut(s)	124, 321, 353, 431, 479, 642
FatI	CATG	6 cut(s)	120, 317, 349, 427, 475, 638
FauI	CCCGC	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	3 cut(s)	241, 244, 592
FokI	GGATG	2 cut(s)	126, 629
Fsp4HI	GCNGC	3 cut(s)	241, 244, 592
GluI	GCNGC	3 cut(s)	241, 244, 592
GsuI	CTGGAG	2 cut(s)	372, 498
HaeIII	GGCC	1 cut(s)	246
Hin1II	CATG	6 cut(s)	124, 321, 353, 431, 479, 642
HinfI	GANTC	2 cut(s)	92, 136
HphI	GGTGA	2 cut(s)	260, 460
Hpy166II	GTNNAC	4 cut(s)	102, 108, 149, 192
Hpy188I	TCNGA	5 cut(s)	73, 97, 254, 307, 568
Hpy188III	TCNNGA	4 cut(s)	175, 295, 527, 639
Hpy8I	GTNNAC	4 cut(s)	102, 108, 149, 192
Hpy99I	CGWCG	2 cut(s)	568, 577
HpyCH4III	ACNGT	2 cut(s)	112, 218
HpyCH4IV	ACGT	2 cut(s)	104, 230
HpyCH4V	TGCA	6 cut(s)	21, 124, 225, 240, 368, 494
HpyF3I	CTNAG	2 cut(s)	96, 582
HpySE526I	ACGT	2 cut(s)	104, 230
Hsp92II	CATG	6 cut(s)	124, 321, 353, 431, 479, 642
KpnI	GGTACC	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	297, 568, 586
Lsp1109I	GCAGC	2 cut(s)	252, 603
LweI	GCATC	2 cut(s)	234, 607
MaeII	ACGT	2 cut(s)	104, 230
MalI	GATC	3 cut(s)	299, 570, 588
MboI	GATC	3 cut(s)	297, 568, 586
MboII	GAAGA	2 cut(s)	190, 443
MfeI	CAATTG	1 cut(s)	86
MflI	RGATCY	1 cut(s)	568
MluCI	AATT	3 cut(s)	86, 255, 260
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	2 cut(s)	447, 546
MnlI	CCTC	3 cut(s)	9, 311, 427
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	390, 516
MunI	CAATTG	1 cut(s)	86
MvaI	CCWGG	2 cut(s)	390, 516
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	3 cut(s)	297, 568, 586
NlaIII	CATG	6 cut(s)	124, 321, 353, 431, 479, 642
NlaIV	GGNNCC	4 cut(s)	220, 525, 570, 603
NspI	RCATGY	2 cut(s)	124, 321
PagI	TCATGA	1 cut(s)	638
PciI	ACATGT	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	569
PfeI	GAWTC	1 cut(s)	92
Pfl23II	CGTACG	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	242, 245, 593
PleI	GAGTC	1 cut(s)	130
PmaCI	CACGTG	1 cut(s)	231
PmlI	CACGTG	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	130
Ppu21I	YACGTR	2 cut(s)	105, 231
PscI	ACATGT	1 cut(s)	317
Psp6I	CCWGG	2 cut(s)	388, 514
PspCI	CACGTG	1 cut(s)	231
PspGI	CCWGG	2 cut(s)	388, 514
PspLI	CGTACG	1 cut(s)	213
PspN4I	GGNNCC	4 cut(s)	220, 525, 570, 603
PspPI	GGNCC	1 cut(s)	245
PsrI	GAACNNNNNNTAC	2 cut(s)	594, 626
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	4 cut(s)	101, 107, 215, 220
RsaNI	GTAC	4 cut(s)	100, 106, 214, 219
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	3 cut(s)	241, 244, 592
Sau3AI	GATC	3 cut(s)	297, 568, 586
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	2 cut(s)	390, 516
SetI	ASST	8 cut(s)	20, 37, 107, 224, 233, 399, 525, 596
SfaNI	GCATC	2 cut(s)	234, 607
Sse9I	AATT	3 cut(s)	86, 255, 260
SsiI	CCGC	2 cut(s)	80, 243
StyD4I	CCNGG	2 cut(s)	388, 514
TaaI	ACNGT	2 cut(s)	112, 218
TaiI	ACGT	2 cut(s)	107, 233
TaqI	TCGA	1 cut(s)	14
TasI	AATT	3 cut(s)	86, 255, 260
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	242, 450
TseI	GCWGC	2 cut(s)	240, 591
TspDTI	ATGAA	4 cut(s)	44, 338, 444, 464
TspGWI	ACGGA	1 cut(s)	561
TspRI	CASTG	2 cut(s)	242, 450
Van91I	CCANNNNNTGG	1 cut(s)	280
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	2 cut(s)	124, 321
XcmI	CCANNNNNNNNNTGG	2 cut(s)	281, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.