Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009119

Physical Location & Seq

Genomic Coordinates Forward (+)

13338168 .. 13342873

Gene Structure 4706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G101700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGAGAAGAGTGCAAGGAGGCGATTGGATTGTATTTCTCGTCACCTTGTATTACCACCTCAAGCTAATCACGGTCTGCAGCAGGTGCTGTTATTAAGTAATGGGCAAGTGAAGAGTGAGGAGGCAGAGCCTGTGGTGATAGGAGGAATGGTGTTGGACATTCATGCCACACCTTCTATCCCTGCAAATCCCAGAACCACTACTCCAGGTAAGGTCAGCTATGTACTAGGAGGGGTAGCAAGGAATGTTGCTGAGTGCATATCAAAGCTAGGAGCAAAGCCATTCATGATTAGTGCATTGGGGCTTGACATGCCAGGAAACTTATTGTTGGAGCACTGGAAGTCTTCTGGGCTATCTACTGAAGGGATTTGGAAGCACCAAAACATTGAGACTCCTGTTGTGTGCAATGTACTTGATGTTAGTGGGGAGTTGGCTGCTGCTGTTGCAAGTGTAGAAGCTATTGAAAAATTTCTAACACCTGAGTGGATCCAGCAATTCAAATATAATATACGCTCTGCTCCAGTGTTGATGATTGATGCAAACCTGAATCTTTCTGCTCTAAAAGCTTCTTGCCAGTTGGCAGCAGAATGCAAAATTCCGGTGTGGTTTGAACCTGTATCAGTAGTAAAATCCAGAAGAATCAGTTCAGTTGTCAAGTATGTAACTTTTGCTTCACCCAATGAAGATGAACTTGTTGCCATGGCAAATAATTTGTCTGGTGGAAATGTGTATTGTCCAATTGAGAGGAACAATAGCAGAAAGAAATGTTCAACAGAAACCTTGTTCCATATGCTAAAATCTGCAGTCTGGGTTTTGCTAGAGAAGGGTATTAAAATAGTTGTTGTGACAGTTGGTTCAGATGGTGTGTTCTTATGCTCTAGAGGAGGGCCAAGCCTCAAACAGTATGCTTCCAATGGAGAATTATTTAATACCGTGACTGCAAGTTGTCCTTCAAATCTGTTCTCGAGTCCTCCGGATTCTGAGAGAAGCTCTTTTCTCTTTGCTGTGCATTTTCCTGCACTTCCTGCATCAGTGGTGAGGCTTACAGGGGCTGGTGATTGCTTGGTTGGTGGAACTATTGCTTCTATTTGTGCAGGTTTAGATGTCATGCAAAGTCTGGCAGTTGGTATTGCGGCTTCCAAAGCTGCAGTTGAGGCGGAGACCAATGTGCCTTCCGTATTTAATTTGGCTGCAATTGCAGATGACGCAAGATCGGTATACTCGGCTGCCAAAGTTGTGTTCCATCAATCAATGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

420

Amino Acids

44.62

Weight (kDa)

7.54

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49350
fragaria_vesca	FvH4_2g08380
malus_domestica	MD10G1080400.v1.1
prunus_persica	Prupe.8G101700_v2.0.a1 Prupe.8G101700_v2.0.a1
pyrus_communis	pycom10g06360
rosa_chinensis	RchiOBHm_Chr6g0263461
rosa_laevigata	RLG00000014333 RLG00000014340
rosa_multiflora	Rmu_sc0000565.1_g000042 Rmu_sc0003785.1_g000022
rosa_roxburghii	Rroxscaffold_176G00431090 Rroxscaffold_176G00431100 Rroxscaffold_7G00204170 Rroxscaffold_7G00204180
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh6AG124600 Rh6BG120700 Rh6CG118900 Rh6DG107200
rosa_wichuraiana	Rw6G010690 Rw6G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	73
Acc36I	ACCTGC	2 cut(s)	73, 1085
AccI	GTMKAC	1 cut(s)	1218
AccIII	TCCGGA	1 cut(s)	973
AciI	CCGC	2 cut(s)	1133, 1157
AclWI	GGATC	2 cut(s)	481, 494
AcsI	RAATTY	2 cut(s)	467, 594
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	2 cut(s)	225, 411
AgsI	TTSAA	5 cut(s)	464, 499, 611, 771, 954
AjnI	CCWGG	2 cut(s)	205, 313
AjuI	GAANNNNNNNTTGG	2 cut(s)	1223, 1255
AleI	CACNNNNGTG	1 cut(s)	481
AloI	GAACNNNNNNTCC	2 cut(s)	187, 219
AluBI	AGCT	7 cut(s)	65, 219, 268, 458, 566, 990, 1145
AluI	AGCT	7 cut(s)	65, 219, 268, 458, 566, 990, 1145
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	383, 1154
AlwI	GGATC	2 cut(s)	481, 494
AlwNI	CAGNNNCTG	3 cut(s)	88, 131, 1052
Ama87I	CYCGRG	1 cut(s)	964
Aor13HI	TCCGGA	1 cut(s)	973
AoxI	GGCC	1 cut(s)	887
ApeKI	GCWGC	7 cut(s)	79, 434, 437, 581, 1145, 1190, 1226
ApoI	RAATTY	2 cut(s)	467, 594
ArsI	GACNNNNNNTTYG	2 cut(s)	698, 730
Asp700I	GAANNNNTTC	2 cut(s)	468, 643
AspS9I	GGNCC	1 cut(s)	887
AsuHPI	GGTGA	5 cut(s)	35, 148, 666, 1048, 1067
AvaI	CYCGRG	1 cut(s)	964
BamHI	GGATCC	1 cut(s)	486
BarI	GAAGNNNNNNTAC	2 cut(s)	1120, 1152
BbsI	GAAGAC	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	7 cut(s)	91, 421, 424, 593, 1132, 1177, 1213
BccI	CCATC	2 cut(s)	854, 1251
BciT130I	CCWGG	2 cut(s)	207, 315
BcoDI	GTCTC	2 cut(s)	383, 1154
BfaI	CTAG	4 cut(s)	227, 269, 818, 879
BfmI	CTRYAG	3 cut(s)	77, 801, 1146
BfuAI	ACCTGC	2 cut(s)	73, 1085
BisI	GCNGC	8 cut(s)	80, 435, 438, 582, 1134, 1146, 1191, 1227
BlsI	GCNGC	8 cut(s)	81, 436, 439, 583, 1135, 1147, 1192, 1228
Bme1390I	CCNGG	2 cut(s)	207, 315
BmeT110I	CYCGRG	1 cut(s)	964
BmgT120I	GGNCC	1 cut(s)	887
BmiI	GGNNCC	1 cut(s)	488
BmrFI	CCNGG	2 cut(s)	207, 315
BmsI	GCATC	2 cut(s)	526, 1037
BpiI	GAAGAC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	974, 1006
BpmI	CTGGAG	2 cut(s)	189, 504
BpuEI	CTTGAG	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	1154
BsaJI	CCNNGG	1 cut(s)	699
BsaWI	WCCGGW	2 cut(s)	598, 973
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 187, 217
Bse1I	ACTGG	3 cut(s)	341, 521, 574
Bse3DI	GCAATG	1 cut(s)	412
BseAI	TCCGGA	1 cut(s)	973
BseBI	CCWGG	2 cut(s)	207, 315
BseDI	CCNNGG	1 cut(s)	699
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	3 cut(s)	243, 471, 972
BseNI	ACTGG	3 cut(s)	341, 521, 574
BseRI	GAGGAG	2 cut(s)	134, 897
BseXI	GCAGC	7 cut(s)	91, 421, 424, 593, 1132, 1177, 1213
BsgI	GTGCAG	2 cut(s)	1002, 1113
BshFI	GGCC	1 cut(s)	889
BsiHKAI	GWGCWC	1 cut(s)	336
BsiHKCI	CYCGRG	1 cut(s)	964
BsiSI	CCGG	2 cut(s)	599, 974
BsmAI	GTCTC	2 cut(s)	383, 1154
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	889
Bso31I	GGTCTC	1 cut(s)	1154
BsoBI	CYCGRG	1 cut(s)	964
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	973
Bsp143I	GATC	2 cut(s)	486, 1211
Bsp19I	CCATGG	1 cut(s)	699
BspACI	CCGC	2 cut(s)	1133, 1157
BspANI	GGCC	1 cut(s)	889
BspCNI	CTCAG	3 cut(s)	244, 472, 973
BspEI	TCCGGA	1 cut(s)	973
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	488
BspMAI	CTGCAG	3 cut(s)	81, 805, 1150
BspMI	ACCTGC	2 cut(s)	73, 1085
BspPI	GGATC	2 cut(s)	481, 494
BspTNI	GGTCTC	1 cut(s)	1154
BsrDI	GCAATG	1 cut(s)	412
BsrI	ACTGG	3 cut(s)	341, 521, 574
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	2 cut(s)	486, 1211
BssNAI	GTATAC	1 cut(s)	1219
BssT1I	CCWWGG	1 cut(s)	699
Bst1107I	GTATAC	1 cut(s)	1219
Bst2UI	CCWGG	2 cut(s)	207, 315
Bst4CI	ACNGT	4 cut(s)	74, 850, 903, 934
Bst6I	CTCTTC	2 cut(s)	2, 107
BstAPI	GCANNNNNTGC	2 cut(s)	85, 1025
BstDEI	CTNAG	3 cut(s)	252, 480, 981
BstDSI	CCRYGG	1 cut(s)	699
BstKTI	GATC	2 cut(s)	489, 1214
BstMAI	GTCTC	2 cut(s)	383, 1154
BstMBI	GATC	2 cut(s)	486, 1211
BstMWI	GCNNNNNNNGC	9 cut(s)	85, 310, 443, 563, 1025, 1142, 1154, 1196, 1205
BstNI	CCWGG	2 cut(s)	207, 315
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	2 cut(s)	205, 313
BstSFI	CTRYAG	3 cut(s)	77, 801, 1146
BstV1I	GCAGC	7 cut(s)	91, 421, 424, 593, 1132, 1177, 1213
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
BstZ17I	GTATAC	1 cut(s)	1219
BsuRI	GGCC	1 cut(s)	889
BtgI	CCRYGG	1 cut(s)	699
BtsIMutI	CAGTG	3 cut(s)	334, 528, 1038
BveI	ACCTGC	2 cut(s)	73, 1085
CaiI	CAGNNNCTG	3 cut(s)	88, 131, 1052
CciI	TCATGA	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	887
CseI	GACGC	1 cut(s)	1214
Csp6I	GTAC	2 cut(s)	224, 410
CviAII	CATG	5 cut(s)	164, 286, 310, 700, 1108
CviQI	GTAC	2 cut(s)	224, 410
DdeI	CTNAG	3 cut(s)	252, 480, 981
DpnI	GATC	2 cut(s)	488, 1213
DpnII	GATC	2 cut(s)	486, 1211
Eam1104I	CTCTTC	2 cut(s)	2, 107
EarI	CTCTTC	2 cut(s)	2, 107
EciI	GGCGGA	1 cut(s)	1172
Eco130I	CCWWGG	1 cut(s)	699
Eco31I	GGTCTC	1 cut(s)	1154
Eco57I	CTGAAG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	964
EcoRII	CCWGG	2 cut(s)	205, 313
EcoT14I	CCWWGG	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	699
FaeI	CATG	5 cut(s)	167, 289, 313, 703, 1111
FalI	AAGNNNNNCTT	4 cut(s)	675, 707, 934, 966
FatI	CATG	5 cut(s)	163, 285, 309, 699, 1107
FauNDI	CATATG	1 cut(s)	789
FblI	GTMKAC	1 cut(s)	1218
Fnu4HI	GCNGC	8 cut(s)	80, 435, 438, 582, 1134, 1146, 1191, 1227
Fsp4HI	GCNGC	8 cut(s)	80, 435, 438, 582, 1134, 1146, 1191, 1227
FspBI	CTAG	4 cut(s)	227, 269, 818, 879
GluI	GCNGC	8 cut(s)	80, 435, 438, 582, 1134, 1146, 1191, 1227
GsuI	CTGGAG	2 cut(s)	189, 504
HaeIII	GGCC	1 cut(s)	889
HapII	CCGG	2 cut(s)	599, 974
HgaI	GACGC	1 cut(s)	1214
Hin1II	CATG	5 cut(s)	167, 289, 313, 703, 1111
HindIII	AAGCTT	1 cut(s)	564
HinfI	GANTC	5 cut(s)	391, 547, 639, 967, 977
HpaII	CCGG	2 cut(s)	599, 974
HphI	GGTGA	5 cut(s)	35, 148, 666, 1048, 1067
Hpy166II	GTNNAC	1 cut(s)	1219
Hpy188I	TCNGA	2 cut(s)	859, 982
Hpy188III	TCNNGA	5 cut(s)	286, 633, 879, 964, 974
Hpy8I	GTNNAC	1 cut(s)	1219
HpyAV	CCTTC	5 cut(s)	183, 356, 817, 960, 1182
HpyCH4III	ACNGT	4 cut(s)	74, 850, 903, 934
HpyF10VI	GCNNNNNNNGC	9 cut(s)	85, 310, 443, 563, 1025, 1142, 1154, 1196, 1205
HpyF3I	CTNAG	3 cut(s)	252, 480, 981
Hsp92II	CATG	5 cut(s)	167, 289, 313, 703, 1111
Kpn2I	TCCGGA	1 cut(s)	973
Kzo9I	GATC	2 cut(s)	486, 1211
LmnI	GCTCC	3 cut(s)	272, 331, 523
Lsp1109I	GCAGC	7 cut(s)	91, 421, 424, 593, 1132, 1177, 1213
LweI	GCATC	2 cut(s)	526, 1037
MaeI	CTAG	4 cut(s)	227, 269, 818, 879
MaeIII	GTNAC	4 cut(s)	41, 661, 844, 934
MalI	GATC	2 cut(s)	488, 1213
MboI	GATC	2 cut(s)	486, 1211
MboII	GAAGA	5 cut(s)	19, 124, 336, 648, 695
MfeI	CAATTG	2 cut(s)	738, 1194
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	8 cut(s)	467, 494, 594, 709, 738, 920, 1183, 1194
MlyI	GAGTC	2 cut(s)	385, 976
MmeI	TCCRAC	2 cut(s)	135, 309
MroI	TCCGGA	1 cut(s)	973
MroXI	GAANNNNTTC	2 cut(s)	468, 643
MseI	TTAA	5 cut(s)	95, 831, 927, 1182, 1258
MslI	CAYNNNNRTG	1 cut(s)	481
MspI	CCGG	2 cut(s)	599, 974
MspR9I	CCNGG	2 cut(s)	207, 315
MunI	CAATTG	2 cut(s)	738, 1194
Mva1269I	GAATGC	1 cut(s)	593
MvaI	CCWGG	2 cut(s)	207, 315
MwoI	GCNNNNNNNGC	9 cut(s)	85, 310, 443, 563, 1025, 1142, 1154, 1196, 1205
NcoI	CCATGG	1 cut(s)	699
NdeI	CATATG	1 cut(s)	789
NdeII	GATC	2 cut(s)	486, 1211
NlaIII	CATG	5 cut(s)	167, 289, 313, 703, 1111
NlaIV	GGNNCC	1 cut(s)	488
NmeAIII	GCCGAG	1 cut(s)	1202
NmuCI	GTSAC	3 cut(s)	41, 844, 934
NspI	RCATGY	1 cut(s)	313
OliI	CACNNNNGTG	1 cut(s)	481
PaeR7I	CTCGAG	1 cut(s)	964
PagI	TCATGA	1 cut(s)	285
PaqCI	CACCTGC	1 cut(s)	73
PctI	GAATGC	1 cut(s)	593
PdmI	GAANNNNTTC	2 cut(s)	468, 643
PfeI	GAWTC	3 cut(s)	547, 639, 977
PkrI	GCNGC	8 cut(s)	81, 436, 439, 583, 1135, 1147, 1192, 1228
PleI	GAGTC	2 cut(s)	385, 975
PpsI	GAGTC	2 cut(s)	385, 975
Psp6I	CCWGG	2 cut(s)	205, 313
PspGI	CCWGG	2 cut(s)	205, 313
PspN4I	GGNNCC	1 cut(s)	488
PspPI	GGNCC	1 cut(s)	887
PstI	CTGCAG	3 cut(s)	81, 805, 1150
PstNI	CAGNNNCTG	3 cut(s)	88, 131, 1052
PsuI	RGATCY	1 cut(s)	486
RsaI	GTAC	2 cut(s)	225, 411
RsaNI	GTAC	2 cut(s)	224, 410
RseI	CAYNNNNRTG	1 cut(s)	481
SaqAI	TTAA	5 cut(s)	95, 831, 927, 1182, 1258
SatI	GCNGC	8 cut(s)	80, 435, 438, 582, 1134, 1146, 1191, 1227
Sau3AI	GATC	2 cut(s)	486, 1211
Sau96I	GGNCC	1 cut(s)	887
SchI	GAGTC	2 cut(s)	385, 976
ScrFI	CCNGG	2 cut(s)	207, 315
SduI	GDGCHC	1 cut(s)	336
SfaNI	GCATC	2 cut(s)	526, 1037
SfcI	CTRYAG	3 cut(s)	77, 801, 1146
Sfr274I	CTCGAG	1 cut(s)	964
SlaI	CTCGAG	1 cut(s)	964
SmiMI	CAYNNNNRTG	1 cut(s)	481
SmlI	CTYRAG	2 cut(s)	60, 964
SmoI	CTYRAG	2 cut(s)	60, 964
Sse9I	AATT	8 cut(s)	467, 494, 594, 709, 738, 920, 1183, 1194
SsiI	CCGC	2 cut(s)	1133, 1157
SspMI	CTAG	4 cut(s)	227, 269, 818, 879
StyD4I	CCNGG	2 cut(s)	205, 313
StyI	CCWWGG	1 cut(s)	699
TaaI	ACNGT	4 cut(s)	74, 850, 903, 934
TaqI	TCGA	1 cut(s)	965
TasI	AATT	8 cut(s)	467, 494, 594, 709, 738, 920, 1183, 1194
TatI	WGTACW	2 cut(s)	223, 409
TauI	GCSGC	1 cut(s)	1136
TfiI	GAWTC	3 cut(s)	547, 639, 977
Tru1I	TTAA	5 cut(s)	95, 831, 927, 1182, 1258
Tru9I	TTAA	5 cut(s)	95, 831, 927, 1182, 1258
TscAI	CASTG	3 cut(s)	341, 528, 1038
TseFI	GTSAC	3 cut(s)	41, 844, 934
TseI	GCWGC	7 cut(s)	79, 434, 437, 581, 1145, 1190, 1226
Tsp45I	GTSAC	3 cut(s)	41, 844, 934
TspDTI	ATGAA	4 cut(s)	152, 274, 696, 702
TspGWI	ACGGA	1 cut(s)	1165
TspRI	CASTG	3 cut(s)	341, 528, 1038
XapI	RAATTY	2 cut(s)	467, 594
XbaI	TCTAGA	1 cut(s)	878
XceI	RCATGY	1 cut(s)	313
XhoI	CTCGAG	1 cut(s)	964
XmiI	GTMKAC	1 cut(s)	1218
XmnI	GAANNNNTTC	2 cut(s)	468, 643
XspI	CTAG	4 cut(s)	227, 269, 818, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.