Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009119

Physical Location & Seq

Genomic Coordinates Reverse (-)

13790628 .. 13800156

Gene Structure 9529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG107200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTCCAAGCTGGGAGCAAAGCCCTTCATGATTAGTGCCTTGGGGCTTGACATGGCAGGAAACTTATTGTTGGAGCACTGGAAGTCTGCTGGGCTATCAACTGAAGGAATTTTGAAGCACCAAAATATCGAGACTGCTGTTGTTTGCAGCGTACTTGATGCCACTGGAGAGTTAGCAGCTGCTGTTGCAAGCGTAGAATCTATTGAAAAATTTCTAACACCTGAGTGGATCGAGCAGTTCGGGTGTAATATACGTTCCTCTACAGTGGTGATGGTTGACGCAAACTTGAACCCGTCTGCTCTAAAGTTTTCTTGCCAATTGGCAGCTGAATCTAAAATTCCTGTGTGGTTTGAGCCGGTTTCAGTAGAAAAATCAAGAAGAATCAATTCAGTTGTCAAGTATATAAGTTTTGCTTCTCCCAATGAAGGTGAACTTGTCGCTATGGCAAATACTTTATCTGGCGGAAATGTGTTTTGTCCAATCGAAAGGGAAAGTAGCACAATTAAATATTCAAAAGAAAAGGTGTTTGATGTGCTAAAACCTGCAATCTGGGTTTTGCTTGAGAACGGCATCAAAATAGTTATTGTGACACTTGGTTCGGATGGAGTGTTCTTATGCTCTAAAGGAGGGCCAAGCTTGATGAGAGTTGGTTGTGAGGGAGTCAAACCATATAACTCAAATGAAAGATTATTTAATATTATGACAACAAGTTGTTCTCCAAAACCATTTTTGAGGCTTCAGGTTTCTGAGAGAAGCTCTCTTCTGTTTGCTGTGCATTTTCCTGCACTCCCCGCATCAGTGGTTAGGCTTACAGGGGCTGGCGATTGTTTGGTTGGGGGAACAATTTCTTCTCTTTGTGCAGGCTTAAATATCATGCAAAGTGTGGCAGTTGGTATTGCAGCTTCGAGAGCTGCAGTTGAGTCAGAGACCAATGTGCCTTCCGCATTTAATTTGGCTGCAATTGCAGATGATGCAAAGTCGGTATACTTGGCTGCTAAAGTTATATTCCATCAATCAATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

341

Amino Acids

36.31

Weight (kDa)

6.45

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	2 - 211	2.2e-15	pfkB family carbohydrate kinase
PfkB	PF00294	258 - 309	3.5e-06	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49350
fragaria_vesca	FvH4_2g08380
malus_domestica	MD10G1080400.v1.1
prunus_persica	Prupe.8G101700_v2.0.a1 Prupe.8G101700_v2.0.a1
pyrus_communis	pycom10g06360
rosa_chinensis	RchiOBHm_Chr6g0263461
rosa_laevigata	RLG00000014333 RLG00000014340
rosa_multiflora	Rmu_sc0000565.1_g000042 Rmu_sc0003785.1_g000022
rosa_roxburghii	Rroxscaffold_176G00431090 Rroxscaffold_176G00431100 Rroxscaffold_7G00204170 Rroxscaffold_7G00204180
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh6AG124600 Rh6BG120700 Rh6CG118900 Rh6DG107200
rosa_wichuraiana	Rw6G010690 Rw6G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	550
AccI	GTMKAC	1 cut(s)	984
AciI	CCGC	3 cut(s)	462, 792, 942
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	3 cut(s)	108, 209, 336
AcuI	CTGAAG	2 cut(s)	123, 722
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	4 cut(s)	115, 206, 289, 513
AleI	CACNNNNGTG	1 cut(s)	223
AloI	GAACNNNNNNTCC	2 cut(s)	593, 625
AluBI	AGCT	7 cut(s)	10, 179, 326, 636, 756, 902, 911
AluI	AGCT	7 cut(s)	10, 179, 326, 636, 756, 902, 911
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	125, 920
AlwI	GGATC	1 cut(s)	236
AlwNI	CAGNNNCTG	2 cut(s)	182, 818
AoxI	GGCC	1 cut(s)	629
ApeKI	GCWGC	8 cut(s)	147, 176, 179, 323, 899, 911, 956, 992
ApoI	RAATTY	3 cut(s)	108, 209, 336
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
Asp700I	GAANNNNTTC	3 cut(s)	210, 385, 844
AspS9I	GGNCC	1 cut(s)	629
AsuHPI	GGTGA	2 cut(s)	280, 440
BarI	GAAGNNNNNNTAC	2 cut(s)	886, 918
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	8 cut(s)	159, 166, 188, 335, 898, 911, 943, 979
BccI	CCATC	3 cut(s)	265, 596, 1017
BceAI	ACGGC	1 cut(s)	583
BcoDI	GTCTC	2 cut(s)	125, 920
BfmI	CTRYAG	2 cut(s)	261, 912
BfuAI	ACCTGC	1 cut(s)	550
BisI	GCNGC	8 cut(s)	148, 177, 180, 324, 900, 912, 957, 993
BlsI	GCNGC	8 cut(s)	149, 178, 181, 325, 901, 913, 958, 994
BmgT120I	GGNCC	1 cut(s)	629
BmsI	GCATC	4 cut(s)	148, 579, 803, 961
BplI	GAGNNNNNCTC	4 cut(s)	740, 772, 742, 774
BpmI	CTGGAG	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	581
BsaI	GGTCTC	1 cut(s)	920
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse118I	RCCGGY	1 cut(s)	355
Bse1I	ACTGG	2 cut(s)	83, 169
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMII	CTCAG	2 cut(s)	213, 738
BseNI	ACTGG	2 cut(s)	83, 169
BseXI	GCAGC	8 cut(s)	159, 166, 188, 335, 898, 911, 943, 979
BseYI	CCCAGC	2 cut(s)	10, 89
BsgI	GTGCAG	2 cut(s)	768, 879
BshFI	GGCC	1 cut(s)	631
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmAI	GTCTC	2 cut(s)	125, 920
BsnI	GGCC	1 cut(s)	631
Bso31I	GGTCTC	1 cut(s)	920
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	228
BspACI	CCGC	3 cut(s)	462, 792, 942
BspANI	GGCC	1 cut(s)	631
BspCNI	CTCAG	2 cut(s)	214, 739
BspHI	TCATGA	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	916
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	920
BsrFI	RCCGGY	1 cut(s)	355
BsrI	ACTGG	2 cut(s)	83, 169
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	228
BssNAI	GTATAC	1 cut(s)	985
BssT1I	CCWWGG	1 cut(s)	39
Bst1107I	GTATAC	1 cut(s)	985
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	1 cut(s)	765
BstAPI	GCANNNNNTGC	1 cut(s)	971
BstC8I	GCNNGC	3 cut(s)	190, 820, 862
BstDEI	CTNAG	2 cut(s)	222, 747
BstF5I	GGATG	1 cut(s)	607
BstKTI	GATC	1 cut(s)	231
BstMAI	GTCTC	2 cut(s)	125, 920
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 791, 908, 962, 971
BstSFI	CTRYAG	2 cut(s)	261, 912
BstV1I	GCAGC	8 cut(s)	159, 166, 188, 335, 898, 911, 943, 979
BstZ17I	GTATAC	1 cut(s)	985
BsuRI	GGCC	1 cut(s)	631
BtsCI	GGATG	1 cut(s)	607
BtsIMutI	CAGTG	4 cut(s)	76, 162, 270, 804
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	3 cut(s)	190, 820, 862
CaiI	CAGNNNCTG	2 cut(s)	182, 818
CciI	TCATGA	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	629
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	3 cut(s)	28, 52, 874
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	2 cut(s)	222, 747
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	765
EarI	CTCTTC	1 cut(s)	765
EciI	GGCGGA	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	920
Eco57I	CTGAAG	2 cut(s)	123, 722
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	31, 55, 877
FalI	AAGNNNNNCTT	4 cut(s)	397, 429, 417, 449
FatI	CATG	3 cut(s)	27, 51, 873
FauI	CCCGC	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	984
Fnu4HI	GCNGC	8 cut(s)	148, 177, 180, 324, 900, 912, 957, 993
FokI	GGATG	1 cut(s)	614
Fsp4HI	GCNGC	8 cut(s)	148, 177, 180, 324, 900, 912, 957, 993
GluI	GCNGC	8 cut(s)	148, 177, 180, 324, 900, 912, 957, 993
GsaI	CCCAGC	2 cut(s)	14, 93
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	631
HapII	CCGG	1 cut(s)	356
HgaI	GACGC	1 cut(s)	287
Hin1II	CATG	3 cut(s)	31, 55, 877
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	634
HinfI	GANTC	5 cut(s)	197, 329, 381, 660, 920
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	2 cut(s)	280, 440
Hpy166II	GTNNAC	3 cut(s)	277, 431, 985
Hpy188I	TCNGA	3 cut(s)	601, 748, 925
Hpy188III	TCNNGA	4 cut(s)	28, 130, 375, 906
Hpy8I	GTNNAC	3 cut(s)	277, 431, 985
HpyAV	CCTTC	4 cut(s)	34, 98, 419, 948
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 791, 908, 962, 971
HpyF3I	CTNAG	2 cut(s)	222, 747
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	3 cut(s)	31, 55, 877
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	14, 73
Lsp1109I	GCAGC	8 cut(s)	159, 166, 188, 335, 898, 911, 943, 979
LweI	GCATC	4 cut(s)	148, 579, 803, 961
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	3 cut(s)	390, 752, 840
MfeI	CAATTG	2 cut(s)	317, 960
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	9 cut(s)	108, 209, 317, 336, 385, 501, 843, 949, 960
MlyI	GAGTC	2 cut(s)	669, 929
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	4 cut(s)	268, 620, 649, 726
MroXI	GAANNNNTTC	3 cut(s)	210, 385, 844
MseI	TTAA	4 cut(s)	504, 693, 866, 948
MslI	CAYNNNNRTG	1 cut(s)	223
MspA1I	CMGCKG	2 cut(s)	179, 326
MspI	CCGG	1 cut(s)	356
MunI	CAATTG	2 cut(s)	317, 960
MwoI	GCNNNNNNNGC	5 cut(s)	185, 791, 908, 962, 971
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	3 cut(s)	31, 55, 877
NmuCI	GTSAC	1 cut(s)	586
OliI	CACNNNNGTG	1 cut(s)	223
PagI	TCATGA	1 cut(s)	27
PdmI	GAANNNNTTC	3 cut(s)	210, 385, 844
PfeI	GAWTC	3 cut(s)	197, 329, 381
PkrI	GCNGC	8 cut(s)	149, 178, 181, 325, 901, 913, 958, 994
PleI	GAGTC	2 cut(s)	668, 928
PpsI	GAGTC	2 cut(s)	668, 928
PspFI	CCCAGC	2 cut(s)	10, 89
PspPI	GGNCC	1 cut(s)	629
PsrI	GAACNNNNNNTAC	2 cut(s)	238, 270
PstI	CTGCAG	1 cut(s)	916
PstNI	CAGNNNCTG	2 cut(s)	182, 818
PvuII	CAGCTG	2 cut(s)	179, 326
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	223
SaqAI	TTAA	4 cut(s)	504, 693, 866, 948
SatI	GCNGC	8 cut(s)	148, 177, 180, 324, 900, 912, 957, 993
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	1 cut(s)	629
SchI	GAGTC	2 cut(s)	669, 929
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	4 cut(s)	148, 579, 803, 961
SfcI	CTRYAG	2 cut(s)	261, 912
SmiMI	CAYNNNNRTG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	9 cut(s)	108, 209, 317, 336, 385, 501, 843, 949, 960
SsiI	CCGC	3 cut(s)	462, 792, 942
SspI	AATATT	2 cut(s)	509, 697
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	4 cut(s)	129, 231, 483, 905
TasI	AATT	9 cut(s)	108, 209, 317, 336, 385, 501, 843, 949, 960
TfiI	GAWTC	3 cut(s)	197, 329, 381
Tru1I	TTAA	4 cut(s)	504, 693, 866, 948
Tru9I	TTAA	4 cut(s)	504, 693, 866, 948
TscAI	CASTG	4 cut(s)	83, 169, 270, 804
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	8 cut(s)	147, 176, 179, 323, 899, 911, 956, 992
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	3 cut(s)	16, 438, 696
TspRI	CASTG	4 cut(s)	83, 169, 270, 804
XapI	RAATTY	3 cut(s)	108, 209, 336
XmiI	GTMKAC	1 cut(s)	984
XmnI	GAANNNNTTC	3 cut(s)	210, 385, 844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.