RLG00000014340

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009119
Physical Location & Seq
Forward (+)
51716706 .. 51721066
4361 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014340

Sequence Viewer

Length: 921 bp
ATGTCCAAGCTGGGAGCAAAGCCCTTCATGATTAGTGCCTGGGGGCTTGACATGACAGGAAACTTATTGTTGGAGCACTGGGAGTCTGCCGGGCTATCAACCAAAGGAATTTGGAAGCACCAAAATATCGAGACTGCTGTTGTTTGCAGCGTACTTAATGCCAGTGGGGAGTTAGCAGCTGCTGTTGCAAGTGTAGAATCTATAGAAAAATTTCTAACACCTGAGTGGATCAAGCAGTTCAGATGTAAAATATGTTCTTCTACTGTGGTGATGGTTGACGCAAACTTGAACCCATCTGCTCTAAAGTCTTCTTGCCAACTGGCTGCTGAATGTAAAATTCCTGGGTGGTTTGAGCCAGTTTCAGTAGAAAAATCAAGAAGAATCAATTCAGTTGCCAAGTATATAAGTTTTGCTTCTCCCAATGAAGATGAACTTGTCGCTATGGCAAATACTTTATCTGGTGGAAATGTGTTTTGTCCAATTGAAAGGGAAAGCAGCACAAGTAAATATTCAAAAGAAAAGGTGTTTGATATGCTAAAACCTGCAATCTGGGTTTTGCTTGAGAATGGCATCAAAATAGTTATTGTGACGCTTGGTTCGGATGGAGTGTTCTTATGCTCTAAAGGAGGGCCAACCTTGATGAGAGTTGGTTGTGAGGGAGTCAAATCGTATAACTCAAATGAAAGATTATTTATTATTATTACGGCAAAGAAGCTCTTTTCTATGGTTGGGGGAACAATTTCTTCTCTTTGTGCAGGCTTAAATATCATGCAGAGTGTGACAGTTGGTATTGCAGCTTCGAAAGCTGCAATTGGGTCAGAGATCAACGTGCCTTCCGCATTCAATTTGGCTGCAATTGCAGATGATGCAAAGTCAGTATACTTGGCTGCTAAAGTTATATTCCATCAATCAATGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

307

Amino Acids

32.77

Weight (kDa)

8.31

Isoelectric Point (pI)

29.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 2 - 210 2.4e-12 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 550
AccI GTMKAC 1 cut(s) 879
AciI CCGC 1 cut(s) 837
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 3 cut(s) 108, 209, 336
AfaI GTAC 1 cut(s) 153
AgsI TTSAA 4 cut(s) 289, 485, 513, 844
AjnI CCWGG 2 cut(s) 38, 340
AleI CACNNNNGTG 1 cut(s) 223
AloI GAACNNNNNNTCC 2 cut(s) 593, 625
AluBI AGCT 5 cut(s) 10, 179, 715, 797, 806
AluI AGCT 5 cut(s) 10, 179, 715, 797, 806
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 1 cut(s) 236
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 1 cut(s) 629
ApeKI GCWGC 9 cut(s) 147, 176, 179, 323, 495, 794, 806, 851, 887
ApoI RAATTY 3 cut(s) 108, 209, 336
ArsI GACNNNNNNTTYG 2 cut(s) 580, 612
Asp700I GAANNNNTTC 3 cut(s) 210, 385, 739
AspS9I GGNCC 1 cut(s) 629
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 280
AsuII TTCGAA 1 cut(s) 800
BarI GAAGNNNNNNTAC 2 cut(s) 781, 813
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 9 cut(s) 159, 166, 188, 310, 507, 793, 806, 838, 874
BccI CCATC 4 cut(s) 265, 301, 596, 912
BceAI ACGGC 1 cut(s) 720
BciT130I CCWGG 2 cut(s) 40, 342
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 550
BisI GCNGC 9 cut(s) 148, 177, 180, 324, 496, 795, 807, 852, 888
BlsI GCNGC 9 cut(s) 149, 178, 181, 325, 497, 796, 808, 853, 889
Bme1390I CCNGG 3 cut(s) 40, 91, 342
BmgT120I GGNCC 1 cut(s) 629
BmrFI CCNGG 3 cut(s) 40, 91, 342
BmrI ACTGGG 1 cut(s) 88
BmsI GCATC 2 cut(s) 579, 856
BmuI ACTGGG 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 300
Bpu14I TTCGAA 1 cut(s) 800
BpuEI CTTGAG 1 cut(s) 581
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 2 cut(s) 39, 341
Bse1I ACTGG 4 cut(s) 83, 162, 324, 356
BseBI CCWGG 2 cut(s) 40, 342
BseDI CCNNGG 2 cut(s) 39, 341
BseGI GGATG 1 cut(s) 607
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 4 cut(s) 83, 162, 324, 356
BseXI GCAGC 9 cut(s) 159, 166, 188, 310, 507, 793, 806, 838, 874
BseYI CCCAGC 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 774
BshFI GGCC 1 cut(s) 631
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 839
BsnI GGCC 1 cut(s) 631
Bsp119I TTCGAA 1 cut(s) 800
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 228, 822
BspACI CCGC 1 cut(s) 837
BspANI GGCC 1 cut(s) 631
BspCNI CTCAG 1 cut(s) 214
BspHI TCATGA 1 cut(s) 27
BspMI ACCTGC 1 cut(s) 550
BspPI GGATC 1 cut(s) 236
BspT104I TTCGAA 1 cut(s) 800
BsrI ACTGG 4 cut(s) 83, 162, 324, 356
BssECI CCNNGG 2 cut(s) 39, 341
BssMI GATC 2 cut(s) 228, 822
BssNAI GTATAC 1 cut(s) 880
Bst1107I GTATAC 1 cut(s) 880
Bst2UI CCWGG 2 cut(s) 40, 342
Bst4CI ACNGT 2 cut(s) 265, 784
BstAPI GCANNNNNTGC 1 cut(s) 866
BstBI TTCGAA 1 cut(s) 800
BstC8I GCNNGC 1 cut(s) 757
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 607
BstKTI GATC 2 cut(s) 231, 825
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 228, 822
BstMWI GCNNNNNNNGC 4 cut(s) 185, 803, 857, 866
BstNI CCWGG 2 cut(s) 40, 342
BstSCI CCNGG 3 cut(s) 38, 89, 340
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 9 cut(s) 159, 166, 188, 310, 507, 793, 806, 838, 874
BstV2I GAAGAC 1 cut(s) 300
BstZ17I GTATAC 1 cut(s) 880
BsuRI GGCC 1 cut(s) 631
BtsCI GGATG 1 cut(s) 607
BtsIMutI CAGTG 2 cut(s) 76, 169
BveI ACCTGC 1 cut(s) 550
Cac8I GCNNGC 1 cut(s) 757
CaiI CAGNNNCTG 1 cut(s) 182
CciI TCATGA 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 629
CseI GACGC 2 cut(s) 287, 598
Csp6I GTAC 1 cut(s) 152
CviAII CATG 3 cut(s) 28, 52, 769
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 1 cut(s) 222
DpnI GATC 2 cut(s) 230, 824
DpnII GATC 2 cut(s) 228, 822
EcoRII CCWGG 2 cut(s) 38, 340
FaeI CATG 3 cut(s) 31, 55, 772
FalI AAGNNNNNCTT 6 cut(s) 397, 429, 417, 449, 701, 733
FatI CATG 3 cut(s) 27, 51, 768
FblI GTMKAC 1 cut(s) 879
Fnu4HI GCNGC 9 cut(s) 148, 177, 180, 324, 496, 795, 807, 852, 888
FokI GGATG 1 cut(s) 614
Fsp4HI GCNGC 9 cut(s) 148, 177, 180, 324, 496, 795, 807, 852, 888
GluI GCNGC 9 cut(s) 148, 177, 180, 324, 496, 795, 807, 852, 888
GsaI CCCAGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 631
HapII CCGG 1 cut(s) 90
HgaI GACGC 2 cut(s) 287, 598
Hin1II CATG 3 cut(s) 31, 55, 772
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 4 cut(s) 83, 197, 381, 660
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 277, 880
Hpy188I TCNGA 3 cut(s) 242, 601, 820
Hpy188III TCNNGA 3 cut(s) 28, 130, 375
Hpy8I GTNNAC 2 cut(s) 277, 880
HpyAV CCTTC 2 cut(s) 34, 843
HpyCH4III ACNGT 2 cut(s) 265, 784
HpyCH4IV ACGT 1 cut(s) 828
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 803, 857, 866
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 1 cut(s) 828
Hsp92II CATG 3 cut(s) 31, 55, 772
Kzo9I GATC 2 cut(s) 228, 822
LmnI GCTCC 2 cut(s) 14, 73
Lsp1109I GCAGC 9 cut(s) 159, 166, 188, 310, 507, 793, 806, 838, 874
LweI GCATC 2 cut(s) 579, 856
MaeII ACGT 1 cut(s) 828
MaeIII GTNAC 2 cut(s) 586, 778
MalI GATC 2 cut(s) 230, 824
MboI GATC 2 cut(s) 228, 822
MboII GAAGA 5 cut(s) 249, 300, 390, 437, 735
MfeI CAATTG 3 cut(s) 480, 810, 855
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 9 cut(s) 108, 209, 336, 385, 480, 738, 810, 844, 855
MlyI GAGTC 2 cut(s) 92, 669
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 2 cut(s) 620, 649
MroXI GAANNNNTTC 3 cut(s) 210, 385, 739
MseI TTAA 2 cut(s) 156, 761
MslI CAYNNNNRTG 1 cut(s) 223
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 3 cut(s) 40, 91, 342
MunI CAATTG 3 cut(s) 480, 810, 855
Mva1269I GAATGC 1 cut(s) 839
MvaI CCWGG 2 cut(s) 40, 342
MwoI GCNNNNNNNGC 4 cut(s) 185, 803, 857, 866
NciI CCSGG 1 cut(s) 91
NdeII GATC 2 cut(s) 228, 822
NlaIII CATG 3 cut(s) 31, 55, 772
NmuCI GTSAC 2 cut(s) 586, 778
NspV TTCGAA 1 cut(s) 800
OliI CACNNNNGTG 1 cut(s) 223
PagI TCATGA 1 cut(s) 27
PctI GAATGC 1 cut(s) 839
PdmI GAANNNNTTC 3 cut(s) 210, 385, 739
PfeI GAWTC 2 cut(s) 197, 381
PkrI GCNGC 9 cut(s) 149, 178, 181, 325, 497, 796, 808, 853, 889
PleI GAGTC 2 cut(s) 91, 668
PpsI GAGTC 2 cut(s) 91, 668
Psp6I CCWGG 2 cut(s) 38, 340
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 2 cut(s) 38, 340
PspPI GGNCC 1 cut(s) 629
PsrI GAACNNNNNNTAC 2 cut(s) 238, 270
PstNI CAGNNNCTG 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 223
SaqAI TTAA 2 cut(s) 156, 761
SatI GCNGC 9 cut(s) 148, 177, 180, 324, 496, 795, 807, 852, 888
Sau3AI GATC 2 cut(s) 228, 822
Sau96I GGNCC 1 cut(s) 629
SchI GAGTC 2 cut(s) 92, 669
ScrFI CCNGG 3 cut(s) 40, 91, 342
SduI GDGCHC 1 cut(s) 78
SfaNI GCATC 2 cut(s) 579, 856
SfcI CTRYAG 1 cut(s) 201
SfuI TTCGAA 1 cut(s) 800
SmiMI CAYNNNNRTG 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 9 cut(s) 108, 209, 336, 385, 480, 738, 810, 844, 855
SsiI CCGC 1 cut(s) 837
SspI AATATT 1 cut(s) 509
StyD4I CCNGG 3 cut(s) 38, 89, 340
TaaI ACNGT 2 cut(s) 265, 784
TaiI ACGT 1 cut(s) 831
TaqI TCGA 2 cut(s) 129, 800
TasI AATT 9 cut(s) 108, 209, 336, 385, 480, 738, 810, 844, 855
TfiI GAWTC 2 cut(s) 197, 381
Tru1I TTAA 2 cut(s) 156, 761
Tru9I TTAA 2 cut(s) 156, 761
TscAI CASTG 2 cut(s) 83, 169
TseFI GTSAC 2 cut(s) 586, 778
TseI GCWGC 9 cut(s) 147, 176, 179, 323, 495, 794, 806, 851, 887
Tsp45I GTSAC 2 cut(s) 586, 778
TspDTI ATGAA 4 cut(s) 16, 438, 444, 696
TspRI CASTG 2 cut(s) 83, 169
XapI RAATTY 3 cut(s) 108, 209, 336
XmiI GTMKAC 1 cut(s) 879
XmnI GAANNNNTTC 3 cut(s) 210, 385, 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.