Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009119

Physical Location & Seq

Genomic Coordinates Forward (+)

7341671 .. 7345287

Gene Structure 3617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g06360.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGTCAGCCAAAAGAATTGTTATCAGTGGAAGTCCCACTACGGAGTCGCCTGGAGATAACACCTACACAGCAACAATGGAGGAAAGCAGTGCAGTGAGGCGACTGGATTCAATTTCTCGTCACCTTCTATTGCAACCTCCTCAACCTAACCATGGCCTTCAACAGGCGGTGTTATTAAGTAATGGGAAATGGGAAAGTGAAGGGTCAGAGGCTGTGGTGATAGGAGGCATGGTGTTGGACATTCATGCCACACCTTCCATCCCTTCAAATCCCAGAACCACCACTCCTGGCAAGGTCAGCTATGTAGGAGGAGGGGTAGCAAGGAATGTTGCCGAGTGCATGTCAAAGCTAGGAGCTAAGCCCTTCATGATAAGCGCCTTGGGCCTTGACATGGCAGGAAACTTATTGTTGGAGCACTGGAAGTCTTCTGGGCTATCTATGGAAGGCATTTTGAGGCACCAAAATGTTGAGACTCCTGTTGTGTGCAACGTACTTGATGTTAATGGGGAGGTGGCCGCTGGTGTTGCGAGTGTAGAAGCTCTCGAAAAGTTTCTGACGCCCGAGTGGATCCAACAGTTTAAATACAGTATACGGTCTGCTCCAGTGTTGATGATTGATGCAAACCTGAATCTTTCTGCTCTAAAAGCTTCTTGCCAATTGGCAGCAGAATCTAAAATTCCAGTGTGGTTTGAGCCTGTATCGGTAACAAAATCTAGAAGAATCAATTCAATTTCCAAGTATGTAAGTTTTGCTTCACCCAACGAGGATGAACTTGTTGCCATGGCAAATGCTTTATCCGGTGGAAATGTGTTTTCTCCAATTGAAAGGGATCAATGCTCAACCGAAACTTTGTTCCATATGCTAAAACCTGCAGTCTGGGTTTTGCTAGAGAAAGGTATCAAAATAGTTGTTGTGACCGTTGGTTCAGATGGAGTGTTCTTATGCTCTAAAGGAGGGCCAAGCTTCATGAGAACTGTTTGCAAGGGAAACAAACCATATGTTTCCAATGCGGAATTGTTTAACACTGTGACTGCAAGTTGTCCATCAAATGCGTTCTCAAATCCTTTAGATTCTGACAAAAGCTCGTTTCTCTTTGCTGTGCAATTTCCTGCACTTCCTGCATCGGTGGTAAGGCTTACAGGAGCTGGCGATTGCTTGGTTGGGGGGACTGTTGCTTCCATTTGTGCAGGTTTAGATGTCATGCAAAGTCTAGCAGTTGGTATTGCAGCTTCCAAAGCTGCAGTTGAGGCAGAGACCAATGTGCCTCGTGTACTTAATCTGGCCGCAATAGCAGATGATGCAAAGTTGGTACACTCGGCTGCAAAAGTTGTGTTCCATCAATCAGTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MaoC_dehydratas PfkB

Protein Analysis

451

Amino Acids

47.51

Weight (kDa)

6.27

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49350
fragaria_vesca	FvH4_2g08380
malus_domestica	MD10G1080400.v1.1
prunus_persica	Prupe.8G101700_v2.0.a1 Prupe.8G101700_v2.0.a1
pyrus_communis	pycom10g06360
rosa_chinensis	RchiOBHm_Chr6g0263461
rosa_laevigata	RLG00000014333 RLG00000014340
rosa_multiflora	Rmu_sc0000565.1_g000042 Rmu_sc0003785.1_g000022
rosa_roxburghii	Rroxscaffold_176G00431090 Rroxscaffold_176G00431100 Rroxscaffold_7G00204170 Rroxscaffold_7G00204180
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh6AG124600 Rh6BG120700 Rh6CG118900 Rh6DG107200
rosa_wichuraiana	Rw6G010690 Rw6G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	877, 1178
AccB1I	GGYRCC	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	589
AciI	CCGC	4 cut(s)	167, 516, 1010, 1284
AclWI	GGATC	3 cut(s)	562, 575, 837
AcoI	YGGCCR	2 cut(s)	513, 1281
AcsI	RAATTY	1 cut(s)	675
AcyI	GRCGYC	1 cut(s)	557
AfaI	GTAC	3 cut(s)	492, 1272, 1311
AfiI	CCNNNNNNNGG	3 cut(s)	152, 163, 391
AgsI	TTSAA	5 cut(s)	111, 161, 267, 729, 824
AjnI	CCWGG	2 cut(s)	49, 286
AloI	GAACNNNNNNTCC	2 cut(s)	268, 300
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	464, 1247
AlwI	GGATC	3 cut(s)	562, 575, 837
AlwNI	CAGNNNCTG	2 cut(s)	212, 1145
Ama87I	CYCGRG	1 cut(s)	560
AoxI	GGCC	5 cut(s)	154, 382, 513, 956, 1281
ApeKI	GCWGC	4 cut(s)	662, 1226, 1238, 1319
ApoI	RAATTY	1 cut(s)	675
Asp700I	GAANNNNTTC	2 cut(s)	549, 724
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	382, 956
AsuHPI	GGTGA	3 cut(s)	113, 229, 747
AvaI	CYCGRG	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	456
BarI	GAAGNNNNNNTAC	4 cut(s)	22, 54, 1213, 1245
BauI	CACGAG	1 cut(s)	1266
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	4 cut(s)	674, 1225, 1238, 1306
BccI	CCATC	4 cut(s)	266, 923, 1051, 1344
BciT130I	CCWGG	2 cut(s)	51, 288
BcoDI	GTCTC	2 cut(s)	464, 1247
BfaI	CTAG	4 cut(s)	350, 714, 887, 1211
BfmI	CTRYAG	2 cut(s)	870, 1239
BfoI	RGCGCY	1 cut(s)	378
BfuAI	ACCTGC	2 cut(s)	877, 1178
BisI	GCNGC	6 cut(s)	516, 663, 1227, 1239, 1284, 1320
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	6 cut(s)	517, 664, 1228, 1240, 1285, 1321
Bme1390I	CCNGG	2 cut(s)	51, 288
BmeT110I	CYCGRG	1 cut(s)	560
BmgT120I	GGNCC	2 cut(s)	382, 956
BmiI	GGNNCC	2 cut(s)	458, 569
BmrFI	CCNGG	2 cut(s)	51, 288
BmsI	GCATC	3 cut(s)	607, 1130, 1288
BpiI	GAAGAC	1 cut(s)	417
BpmI	CTGGAG	2 cut(s)	72, 585
Bpu1102I	GCTNAGC	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	557
BsaI	GGTCTC	1 cut(s)	1247
BsaJI	CCNNGG	3 cut(s)	151, 378, 780
BsaWI	WCCGGW	1 cut(s)	797
BsaXI	ACNNNNNCTCC	6 cut(s)	216, 246, 268, 298, 300, 330
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 163, 391
Bse1I	ACTGG	4 cut(s)	108, 422, 602, 680
BseBI	CCWGG	2 cut(s)	51, 288
BseDI	CCNNGG	3 cut(s)	151, 378, 780
BseGI	GGATG	2 cut(s)	258, 772
BseLI	CCNNNNNNNGG	3 cut(s)	152, 163, 391
BseNI	ACTGG	4 cut(s)	108, 422, 602, 680
BseRI	GAGGAG	2 cut(s)	129, 324
BseXI	GCAGC	4 cut(s)	674, 1225, 1238, 1306
BsgI	GTGCAG	3 cut(s)	111, 1095, 1206
BshFI	GGCC	5 cut(s)	156, 384, 515, 958, 1283
BshNI	GGYRCC	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	798
BslFI	GGGAC	2 cut(s)	18, 1180
BslI	CCNNNNNNNGG	3 cut(s)	152, 163, 391
BsmAI	GTCTC	2 cut(s)	464, 1247
BsmFI	GGGAC	2 cut(s)	18, 1180
BsnI	GGCC	5 cut(s)	156, 384, 515, 958, 1283
Bso31I	GGTCTC	1 cut(s)	1247
BsoBI	CYCGRG	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	567, 829
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp19I	CCATGG	2 cut(s)	151, 780
BspACI	CCGC	4 cut(s)	167, 516, 1010, 1284
BspANI	GGCC	5 cut(s)	156, 384, 515, 958, 1283
BspHI	TCATGA	2 cut(s)	366, 966
BspLI	GGNNCC	2 cut(s)	458, 569
BspMAI	CTGCAG	2 cut(s)	874, 1243
BspMI	ACCTGC	2 cut(s)	877, 1178
BspPI	GGATC	3 cut(s)	562, 575, 837
BspT107I	GGYRCC	1 cut(s)	456
BspTNI	GGTCTC	1 cut(s)	1247
BsrI	ACTGG	4 cut(s)	108, 422, 602, 680
BssECI	CCNNGG	3 cut(s)	151, 378, 780
BssMI	GATC	2 cut(s)	567, 829
BssNAI	GTATAC	1 cut(s)	590
BssNI	GRCGYC	1 cut(s)	557
BssSI	CACGAG	1 cut(s)	1266
BssT1I	CCWWGG	3 cut(s)	151, 378, 780
Bst1107I	GTATAC	1 cut(s)	590
Bst2BI	CACGAG	1 cut(s)	1266
Bst2UI	CCWGG	2 cut(s)	51, 288
Bst4CI	ACNGT	7 cut(s)	576, 587, 594, 919, 976, 1027, 1171
BstACI	GRCGYC	1 cut(s)	557
BstAPI	GCANNNNNTGC	2 cut(s)	1118, 1298
BstC8I	GCNNGC	1 cut(s)	1147
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	2 cut(s)	151, 780
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	258, 772
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	2 cut(s)	570, 832
BstMAI	GTCTC	2 cut(s)	464, 1247
BstMBI	GATC	2 cut(s)	567, 829
BstMWI	GCNNNNNNNGC	9 cut(s)	297, 381, 524, 644, 1118, 1235, 1247, 1289, 1298
BstNI	CCWGG	2 cut(s)	51, 288
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	2 cut(s)	49, 286
BstSFI	CTRYAG	2 cut(s)	870, 1239
BstV1I	GCAGC	4 cut(s)	674, 1225, 1238, 1306
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	567
BstYI	RGATCY	1 cut(s)	567
BstZ17I	GTATAC	1 cut(s)	590
BsuRI	GGCC	5 cut(s)	156, 384, 515, 958, 1283
BtgI	CCRYGG	2 cut(s)	151, 780
BtsCI	GGATG	2 cut(s)	258, 772
BtsI	GCAGTG	2 cut(s)	94, 99
BtsIMutI	CAGTG	8 cut(s)	31, 94, 99, 415, 609, 687, 1023, 1350
BveI	ACCTGC	2 cut(s)	877, 1178
Cac8I	GCNNGC	1 cut(s)	1147
CaiI	CAGNNNCTG	2 cut(s)	212, 1145
CciI	TCATGA	2 cut(s)	366, 966
CfoI	GCGC	1 cut(s)	377
Cfr13I	GGNCC	2 cut(s)	382, 956
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	3 cut(s)	491, 1271, 1310
CviAII	CATG	9 cut(s)	152, 229, 245, 340, 367, 391, 781, 967, 1201
CviQI	GTAC	3 cut(s)	491, 1271, 1310
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	2 cut(s)	569, 831
DpnII	GATC	2 cut(s)	567, 829
DraI	TTTAAA	1 cut(s)	580
EaeI	YGGCCR	2 cut(s)	513, 1281
Eco130I	CCWWGG	3 cut(s)	151, 378, 780
Eco31I	GGTCTC	1 cut(s)	1247
Eco88I	CYCGRG	1 cut(s)	560
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoRII	CCWGG	2 cut(s)	49, 286
EcoT14I	CCWWGG	3 cut(s)	151, 378, 780
ErhI	CCWWGG	3 cut(s)	151, 378, 780
FaeI	CATG	9 cut(s)	155, 232, 248, 343, 370, 394, 784, 970, 1204
FalI	AAGNNNNNCTT	2 cut(s)	736, 768
FaqI	GGGAC	2 cut(s)	18, 1180
FatI	CATG	9 cut(s)	151, 228, 244, 339, 366, 390, 780, 966, 1200
FauNDI	CATATG	2 cut(s)	858, 997
FblI	GTMKAC	1 cut(s)	589
Fnu4HI	GCNGC	6 cut(s)	516, 663, 1227, 1239, 1284, 1320
FokI	GGATG	2 cut(s)	245, 779
Fsp4HI	GCNGC	6 cut(s)	516, 663, 1227, 1239, 1284, 1320
FspBI	CTAG	4 cut(s)	350, 714, 887, 1211
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	6 cut(s)	516, 663, 1227, 1239, 1284, 1320
GsuI	CTGGAG	2 cut(s)	72, 585
HaeII	RGCGCY	1 cut(s)	378
HaeIII	GGCC	5 cut(s)	156, 384, 515, 958, 1283
HapII	CCGG	1 cut(s)	798
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	1 cut(s)	377
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	9 cut(s)	155, 232, 248, 343, 370, 394, 784, 970, 1204
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HindIII	AAGCTT	2 cut(s)	645, 961
HinfI	GANTC	7 cut(s)	44, 107, 472, 628, 668, 720, 1070
HpaII	CCGG	1 cut(s)	798
HphI	GGTGA	3 cut(s)	113, 229, 747
Hpy166II	GTNNAC	3 cut(s)	590, 1271, 1312
Hpy188I	TCNGA	4 cut(s)	208, 555, 928, 1075
Hpy188III	TCNNGA	4 cut(s)	367, 542, 714, 967
Hpy8I	GTNNAC	3 cut(s)	590, 1271, 1312
HpyAV	CCTTC	7 cut(s)	134, 167, 194, 264, 273, 373, 437
HpyCH4III	ACNGT	7 cut(s)	576, 587, 594, 919, 976, 1027, 1171
HpyCH4IV	ACGT	1 cut(s)	489
HpyF10VI	GCNNNNNNNGC	9 cut(s)	297, 381, 524, 644, 1118, 1235, 1247, 1289, 1298
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	489
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	9 cut(s)	155, 232, 248, 343, 370, 394, 784, 970, 1204
HspAI	GCGC	1 cut(s)	375
Kzo9I	GATC	2 cut(s)	567, 829
LmnI	GCTCC	4 cut(s)	353, 412, 604, 1142
Lsp1109I	GCAGC	4 cut(s)	674, 1225, 1238, 1306
LweI	GCATC	3 cut(s)	607, 1130, 1288
MaeI	CTAG	4 cut(s)	350, 714, 887, 1211
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	4 cut(s)	119, 703, 913, 1027
MalI	GATC	2 cut(s)	569, 831
MboI	GATC	2 cut(s)	567, 829
MboII	GAAGA	2 cut(s)	417, 729
MfeI	CAATTG	2 cut(s)	656, 819
MflI	RGATCY	1 cut(s)	567
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	9 cut(s)	15, 111, 656, 675, 724, 729, 819, 1013, 1103
MlyI	GAGTC	2 cut(s)	53, 466
MmeI	TCCRAC	3 cut(s)	216, 390, 595
MroXI	GAANNNNTTC	2 cut(s)	549, 724
MseI	TTAA	6 cut(s)	176, 501, 579, 1020, 1275, 1351
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	798
MspR9I	CCNGG	2 cut(s)	51, 288
MunI	CAATTG	2 cut(s)	656, 819
MvaI	CCWGG	2 cut(s)	51, 288
MwoI	GCNNNNNNNGC	9 cut(s)	297, 381, 524, 644, 1118, 1235, 1247, 1289, 1298
NcoI	CCATGG	2 cut(s)	151, 780
NdeI	CATATG	2 cut(s)	858, 997
NdeII	GATC	2 cut(s)	567, 829
NlaIII	CATG	9 cut(s)	155, 232, 248, 343, 370, 394, 784, 970, 1204
NlaIV	GGNNCC	2 cut(s)	458, 569
NmeAIII	GCCGAG	2 cut(s)	358, 1295
NmuCI	GTSAC	3 cut(s)	119, 913, 1027
NspI	RCATGY	1 cut(s)	343
PagI	TCATGA	2 cut(s)	366, 966
PdmI	GAANNNNTTC	2 cut(s)	549, 724
PfeI	GAWTC	5 cut(s)	107, 628, 668, 720, 1070
PkrI	GCNGC	6 cut(s)	517, 664, 1228, 1240, 1285, 1321
PleI	GAGTC	2 cut(s)	52, 466
PpsI	GAGTC	2 cut(s)	52, 466
Psp6I	CCWGG	2 cut(s)	49, 286
PspGI	CCWGG	2 cut(s)	49, 286
PspN4I	GGNNCC	2 cut(s)	458, 569
PspPI	GGNCC	2 cut(s)	382, 956
PstI	CTGCAG	2 cut(s)	874, 1243
PstNI	CAGNNNCTG	2 cut(s)	212, 1145
PsuI	RGATCY	1 cut(s)	567
RsaI	GTAC	3 cut(s)	492, 1272, 1311
RsaNI	GTAC	3 cut(s)	491, 1271, 1310
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	6 cut(s)	176, 501, 579, 1020, 1275, 1351
SatI	GCNGC	6 cut(s)	516, 663, 1227, 1239, 1284, 1320
Sau3AI	GATC	2 cut(s)	567, 829
Sau96I	GGNCC	2 cut(s)	382, 956
SchI	GAGTC	2 cut(s)	53, 466
ScrFI	CCNGG	2 cut(s)	51, 288
SduI	GDGCHC	1 cut(s)	417
SfaNI	GCATC	3 cut(s)	607, 1130, 1288
SfcI	CTRYAG	2 cut(s)	870, 1239
SmiMI	CAYNNNNRTG	1 cut(s)	462
Sse9I	AATT	9 cut(s)	15, 111, 656, 675, 724, 729, 819, 1013, 1103
SsiI	CCGC	4 cut(s)	167, 516, 1010, 1284
SspMI	CTAG	4 cut(s)	350, 714, 887, 1211
StyD4I	CCNGG	2 cut(s)	49, 286
StyI	CCWWGG	3 cut(s)	151, 378, 780
TaaI	ACNGT	7 cut(s)	576, 587, 594, 919, 976, 1027, 1171
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	1 cut(s)	543
TasI	AATT	9 cut(s)	15, 111, 656, 675, 724, 729, 819, 1013, 1103
TatI	WGTACW	1 cut(s)	1270
TauI	GCSGC	2 cut(s)	518, 1286
TfiI	GAWTC	5 cut(s)	107, 628, 668, 720, 1070
Tru1I	TTAA	6 cut(s)	176, 501, 579, 1020, 1275, 1351
Tru9I	TTAA	6 cut(s)	176, 501, 579, 1020, 1275, 1351
TscAI	CASTG	8 cut(s)	31, 94, 99, 422, 609, 687, 1030, 1350
TseFI	GTSAC	3 cut(s)	119, 913, 1027
TseI	GCWGC	4 cut(s)	662, 1226, 1238, 1319
Tsp45I	GTSAC	3 cut(s)	119, 913, 1027
TspDTI	ATGAA	4 cut(s)	233, 355, 783, 955
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	8 cut(s)	31, 94, 99, 422, 609, 687, 1030, 1350
XagI	CCTNNNNNAGG	1 cut(s)	161
XapI	RAATTY	1 cut(s)	675
XbaI	TCTAGA	1 cut(s)	713
XceI	RCATGY	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	589
XmnI	GAANNNNTTC	2 cut(s)	549, 724
XspI	CTAG	4 cut(s)	350, 714, 887, 1211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.