zinc finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G22310 AT1G22310 |
| fragaria_vesca | FvH4_2g11920 FvH4_2g11920 |
| malus_domestica | MD05G1043400.v1.1 MD10G1050700.v1.1 |
| prunus_persica | Prupe.8G062800_v2.0.a1 Prupe.8G062800_v2.0.a1 |
| pyrus_communis | pycom05g03580 pycom05g03610 pycom10g03570 |
| rosa_chinensis | RchiOBHm_Chr6g0271611 RchiOBHm_Chr6g0271621 RchiOBHm_Chr6g0271751 RchiOBHm_Chr6g0271781 |
| rosa_laevigata | RLG00000013717 RLG00000013732 |
| rosa_multiflora | Rmu_co8510743.1_g000001 Rmu_sc0002396.1_g000008 |
| rosa_roxburghii | Rroxscaffold_173G00435060 Rroxscaffold_7G00196650 |
| rosa_rugosa | Rorug06G0062300 |
| rosa_samantha | Rh6AG181100 Rh6BG186200 Rh6CG180700 Rh6CG181600 |
| rosa_wichuraiana | Rw6G015530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 131, 1820, 2080 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 148, 2173 |
| AccBSI | CCGCTC | 1 cut(s) | 123 |
| AccI | GTMKAC | 2 cut(s) | 513, 958 |
| AccII | CGCG | 2 cut(s) | 228, 738 |
| AclWI | GGATC | 4 cut(s) | 338, 351, 1460, 2193 |
| AcoI | YGGCCR | 2 cut(s) | 316, 625 |
| AcsI | RAATTY | 6 cut(s) | 350, 532, 674, 1366, 1491, 1705 |
| AcuI | CTGAAG | 4 cut(s) | 344, 811, 1758, 2234 |
| AcyI | GRCGYC | 3 cut(s) | 132, 666, 1240 |
| AdeI | CACNNNGTG | 1 cut(s) | 148 |
| AfaI | GTAC | 2 cut(s) | 1857, 2400 |
| AfeI | AGCGCT | 1 cut(s) | 329 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 148, 550, 699, 892, 2173 |
| AflIII | ACRYGT | 1 cut(s) | 2137 |
| AjnI | CCWGG | 4 cut(s) | 144, 303, 339, 1303 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1697, 1729, 2127, 2159 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1254, 1286 |
| AluBI | AGCT | 9 cut(s) | 91, 706, 945, 1591, 1634, 1652, 1980, 2000, 2338 |
| AluI | AGCT | 9 cut(s) | 91, 706, 945, 1591, 1634, 1652, 1980, 2000, 2338 |
| Alw21I | GWGCWC | 1 cut(s) | 93 |
| Alw26I | GTCTC | 3 cut(s) | 84, 578, 1341 |
| AlwI | GGATC | 4 cut(s) | 338, 351, 1460, 2193 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1117, 1652 |
| Ama87I | CYCGRG | 1 cut(s) | 998 |
| Aor51HI | AGCGCT | 1 cut(s) | 329 |
| AoxI | GGCC | 6 cut(s) | 235, 270, 306, 316, 625, 715 |
| ApeKI | GCWGC | 5 cut(s) | 506, 1111, 1457, 1643, 2328 |
| ApoI | RAATTY | 6 cut(s) | 350, 532, 674, 1366, 1491, 1705 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 562, 594 |
| AseI | ATTAAT | 1 cut(s) | 1578 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 329 |
| AspLEI | GCGC | 7 cut(s) | 16, 134, 228, 330, 506, 726, 740 |
| AspS9I | GGNCC | 8 cut(s) | 151, 192, 235, 271, 883, 1307, 1430, 1862 |
| AsuC2I | CCSGG | 3 cut(s) | 190, 269, 287 |
| AsuHPI | GGTGA | 5 cut(s) | 869, 1121, 1293, 1814, 1841 |
| AsuII | TTCGAA | 1 cut(s) | 1273 |
| AvaI | CYCGRG | 1 cut(s) | 998 |
| AvaII | GGWCC | 6 cut(s) | 151, 192, 883, 1307, 1430, 1862 |
| AxyI | CCTNAGG | 1 cut(s) | 21 |
| BalI | TGGCCA | 1 cut(s) | 627 |
| BamHI | GGATCC | 1 cut(s) | 343 |
| BanI | GGYRCC | 3 cut(s) | 131, 1820, 2080 |
| BanII | GRGCYC | 5 cut(s) | 93, 375, 486, 526, 999 |
| BbsI | GAAGAC | 1 cut(s) | 1760 |
| Bbv12I | GWGCWC | 1 cut(s) | 93 |
| BbvCI | CCTCAGC | 1 cut(s) | 1038 |
| BbvI | GCAGC | 5 cut(s) | 493, 1123, 1444, 1630, 2340 |
| BceAI | ACGGC | 1 cut(s) | 145 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 890, 924 |
| BciT130I | CCWGG | 4 cut(s) | 146, 305, 341, 1305 |
| BclI | TGATCA | 1 cut(s) | 1600 |
| BcnI | CCSGG | 3 cut(s) | 190, 269, 287 |
| BcoDI | GTCTC | 3 cut(s) | 84, 578, 1341 |
| BfaI | CTAG | 3 cut(s) | 213, 1884, 2180 |
| BfmI | CTRYAG | 3 cut(s) | 507, 527, 1644 |
| BfoI | RGCGCY | 4 cut(s) | 17, 135, 331, 507 |
| BglII | AGATCT | 1 cut(s) | 1558 |
| Bme1390I | CCNGG | 7 cut(s) | 146, 190, 269, 287, 305, 341, 1305 |
| Bme18I | GGWCC | 6 cut(s) | 151, 192, 883, 1307, 1430, 1862 |
| BmeT110I | CYCGRG | 1 cut(s) | 998 |
| BmgT120I | GGNCC | 8 cut(s) | 151, 192, 235, 271, 883, 1307, 1430, 1862 |
| BmiI | GGNNCC | 9 cut(s) | 133, 153, 193, 194, 345, 372, 1432, 1822, 2082 |
| BmrFI | CCNGG | 7 cut(s) | 146, 190, 269, 287, 305, 341, 1305 |
| BmrI | ACTGGG | 4 cut(s) | 971, 1428, 1926, 2061 |
| BmsI | GCATC | 8 cut(s) | 404, 673, 1123, 1630, 1666, 1799, 1936, 2280 |
| BmuI | ACTGGG | 4 cut(s) | 971, 1428, 1926, 2061 |
| BpiI | GAAGAC | 1 cut(s) | 1760 |
| BpmI | CTGGAG | 2 cut(s) | 1613, 2273 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1038 |
| Bpu14I | TTCGAA | 1 cut(s) | 1273 |
| BpuEI | CTTGAG | 1 cut(s) | 704 |
| BpuMI | CCSGG | 3 cut(s) | 190, 269, 287 |
| Bsa29I | ATCGAT | 1 cut(s) | 2264 |
| BsaHI | GRCGYC | 3 cut(s) | 132, 666, 1240 |
| BsaJI | CCNNGG | 4 cut(s) | 267, 339, 694, 2013 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 584, 614 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 148, 550, 699, 892, 2173 |
| Bse21I | CCTNAGG | 1 cut(s) | 21 |
| BseBI | CCWGG | 4 cut(s) | 146, 305, 341, 1305 |
| BseCI | ATCGAT | 1 cut(s) | 2264 |
| BseDI | CCNNGG | 4 cut(s) | 267, 339, 694, 2013 |
| BseGI | GGATG | 9 cut(s) | 395, 559, 688, 1180, 1198, 1645, 1790, 1927, 2105 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 148, 550, 699, 892, 2173 |
| BseMII | CTCAG | 4 cut(s) | 35, 95, 579, 1029 |
| BseRI | GAGGAG | 7 cut(s) | 83, 577, 580, 605, 608, 1300, 2270 |
| BseXI | GCAGC | 5 cut(s) | 493, 1123, 1444, 1630, 2340 |
| BseYI | CCCAGC | 2 cut(s) | 273, 374 |
| BsgI | GTGCAG | 1 cut(s) | 1443 |
| Bsh1236I | CGCG | 2 cut(s) | 228, 738 |
| Bsh1285I | CGRYCG | 1 cut(s) | 166 |
| BshFI | GGCC | 6 cut(s) | 237, 272, 308, 318, 627, 717 |
| BshNI | GGYRCC | 3 cut(s) | 131, 1820, 2080 |
| BshVI | ATCGAT | 1 cut(s) | 2264 |
| BsiEI | CGRYCG | 1 cut(s) | 166 |
| BsiHKAI | GWGCWC | 1 cut(s) | 93 |
| BsiHKCI | CYCGRG | 1 cut(s) | 998 |
| BsiSI | CCGG | 4 cut(s) | 189, 220, 269, 287 |
| BslFI | GGGAC | 3 cut(s) | 137, 178, 629 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 148, 550, 699, 892, 2173 |
| BsmAI | GTCTC | 3 cut(s) | 84, 578, 1341 |
| BsmFI | GGGAC | 3 cut(s) | 137, 178, 629 |
| BsnI | GGCC | 6 cut(s) | 237, 272, 308, 318, 627, 717 |
| BsoBI | CYCGRG | 1 cut(s) | 998 |
| Bsp119I | TTCGAA | 1 cut(s) | 1273 |
| Bsp1286I | GDGCHC | 5 cut(s) | 93, 375, 486, 526, 999 |
| Bsp1407I | TGTACA | 1 cut(s) | 1855 |
| Bsp143I | GATC | 8 cut(s) | 167, 343, 1465, 1558, 1566, 1600, 2185, 2297 |
| BspANI | GGCC | 6 cut(s) | 237, 272, 308, 318, 627, 717 |
| BspCNI | CTCAG | 4 cut(s) | 34, 94, 580, 1030 |
| BspDI | ATCGAT | 1 cut(s) | 2264 |
| BspFNI | CGCG | 2 cut(s) | 228, 738 |
| BspHI | TCATGA | 1 cut(s) | 609 |
| BspLI | GGNNCC | 9 cut(s) | 133, 153, 193, 194, 345, 372, 1432, 1822, 2082 |
| BspMAI | CTGCAG | 3 cut(s) | 511, 531, 1648 |
| BspPI | GGATC | 4 cut(s) | 338, 351, 1460, 2193 |
| BspT104I | TTCGAA | 1 cut(s) | 1273 |
| BspT107I | GGYRCC | 3 cut(s) | 131, 1820, 2080 |
| BsrBI | CCGCTC | 1 cut(s) | 123 |
| BsrGI | TGTACA | 1 cut(s) | 1855 |
| BssECI | CCNNGG | 4 cut(s) | 267, 339, 694, 2013 |
| BssMI | GATC | 8 cut(s) | 167, 343, 1465, 1558, 1566, 1600, 2185, 2297 |
| BssNAI | GTATAC | 1 cut(s) | 959 |
| BssNI | GRCGYC | 3 cut(s) | 132, 666, 1240 |
| BssT1I | CCWWGG | 1 cut(s) | 2013 |
| Bst1107I | GTATAC | 1 cut(s) | 959 |
| Bst2UI | CCWGG | 4 cut(s) | 146, 305, 341, 1305 |
| Bst4CI | ACNGT | 2 cut(s) | 1168, 2408 |
| Bst6I | CTCTTC | 6 cut(s) | 113, 425, 644, 1290, 1323, 1734 |
| BstACI | GRCGYC | 3 cut(s) | 132, 666, 1240 |
| BstAUI | TGTACA | 1 cut(s) | 1855 |
| BstBI | TTCGAA | 1 cut(s) | 1273 |
| BstC8I | GCNNGC | 3 cut(s) | 235, 239, 2326 |
| BstDEI | CTNAG | 5 cut(s) | 21, 43, 81, 588, 1038 |
| BstF5I | GGATG | 9 cut(s) | 395, 559, 688, 1180, 1198, 1645, 1790, 1927, 2105 |
| BstFNI | CGCG | 2 cut(s) | 228, 738 |
| BstH2I | RGCGCY | 4 cut(s) | 17, 135, 331, 507 |
| BstHHI | GCGC | 7 cut(s) | 16, 134, 228, 330, 506, 726, 740 |
| BstKTI | GATC | 8 cut(s) | 170, 346, 1468, 1561, 1569, 1603, 2188, 2300 |
| BstMAI | GTCTC | 3 cut(s) | 84, 578, 1341 |
| BstMBI | GATC | 8 cut(s) | 167, 343, 1465, 1558, 1566, 1600, 2185, 2297 |
| BstMCI | CGRYCG | 1 cut(s) | 166 |
| BstNI | CCWGG | 4 cut(s) | 146, 305, 341, 1305 |
| BstNSI | RCATGY | 2 cut(s) | 1259, 2141 |
| BstSCI | CCNGG | 7 cut(s) | 144, 188, 267, 285, 303, 339, 1303 |
| BstSFI | CTRYAG | 3 cut(s) | 507, 527, 1644 |
| BstUI | CGCG | 2 cut(s) | 228, 738 |
| BstV1I | GCAGC | 5 cut(s) | 493, 1123, 1444, 1630, 2340 |
| BstV2I | GAAGAC | 1 cut(s) | 1760 |
| BstX2I | RGATCY | 4 cut(s) | 343, 1465, 1558, 2185 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1859 |
| BstYI | RGATCY | 4 cut(s) | 343, 1465, 1558, 2185 |
| BstZ17I | GTATAC | 1 cut(s) | 959 |
| Bsu15I | ATCGAT | 1 cut(s) | 2264 |
| Bsu36I | CCTNAGG | 1 cut(s) | 21 |
| BsuRI | GGCC | 6 cut(s) | 237, 272, 308, 318, 627, 717 |
| BsuTUI | ATCGAT | 1 cut(s) | 2264 |
| BtsCI | GGATG | 9 cut(s) | 395, 559, 688, 1180, 1198, 1645, 1790, 1927, 2105 |
| BtsI | GCAGTG | 1 cut(s) | 1422 |
| BtsIMutI | CAGTG | 6 cut(s) | 635, 669, 1422, 2075, 2249, 2436 |
| Cac8I | GCNNGC | 3 cut(s) | 235, 239, 2326 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1117, 1652 |
| CciI | TCATGA | 1 cut(s) | 609 |
| CfoI | GCGC | 7 cut(s) | 16, 134, 228, 330, 506, 726, 740 |
| Cfr13I | GGNCC | 8 cut(s) | 151, 192, 235, 271, 883, 1307, 1430, 1862 |
| ClaI | ATCGAT | 1 cut(s) | 2264 |
| CseI | GACGC | 4 cut(s) | 64, 674, 1229, 1388 |
| CsiI | ACCWGGT | 2 cut(s) | 144, 1303 |
| Csp6I | GTAC | 2 cut(s) | 1856, 2399 |
| CviQI | GTAC | 2 cut(s) | 1856, 2399 |
| DdeI | CTNAG | 5 cut(s) | 21, 43, 81, 588, 1038 |
| DinI | GGCGCC | 1 cut(s) | 133 |
| DpnI | GATC | 8 cut(s) | 169, 345, 1467, 1560, 1568, 1602, 2187, 2299 |
| DpnII | GATC | 8 cut(s) | 167, 343, 1465, 1558, 1566, 1600, 2185, 2297 |
| DraIII | CACNNNGTG | 1 cut(s) | 148 |
| EaeI | YGGCCR | 2 cut(s) | 316, 625 |
| Eam1104I | CTCTTC | 6 cut(s) | 113, 425, 644, 1290, 1323, 1734 |
| EarI | CTCTTC | 6 cut(s) | 113, 425, 644, 1290, 1323, 1734 |
| EciI | GGCGGA | 1 cut(s) | 428 |
| Ecl136II | GAGCTC | 1 cut(s) | 91 |
| Eco130I | CCWWGG | 1 cut(s) | 2013 |
| Eco24I | GRGCYC | 5 cut(s) | 93, 375, 486, 526, 999 |
| Eco47I | GGWCC | 6 cut(s) | 151, 192, 883, 1307, 1430, 1862 |
| Eco47III | AGCGCT | 1 cut(s) | 329 |
| Eco53kI | GAGCTC | 1 cut(s) | 91 |
| Eco57I | CTGAAG | 4 cut(s) | 344, 811, 1758, 2234 |
| Eco81I | CCTNAGG | 1 cut(s) | 21 |
| Eco88I | CYCGRG | 1 cut(s) | 998 |
| EcoICRI | GAGCTC | 1 cut(s) | 91 |
| EcoO109I | RGGNCCY | 1 cut(s) | 192 |
| EcoRI | GAATTC | 4 cut(s) | 532, 674, 1366, 1705 |
| EcoRII | CCWGG | 4 cut(s) | 144, 303, 339, 1303 |
| EcoT14I | CCWWGG | 1 cut(s) | 2013 |
| EcoT38I | GRGCYC | 5 cut(s) | 93, 375, 486, 526, 999 |
| EgeI | GGCGCC | 1 cut(s) | 133 |
| EheI | GGCGCC | 1 cut(s) | 133 |
| ErhI | CCWWGG | 1 cut(s) | 2013 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 383, 415, 2229, 2261 |
| FaqI | GGGAC | 3 cut(s) | 137, 178, 629 |
| FauI | CCCGC | 4 cut(s) | 128, 203, 226, 432 |
| FbaI | TGATCA | 1 cut(s) | 1600 |
| FblI | GTMKAC | 2 cut(s) | 513, 958 |
| FokI | GGATG | 9 cut(s) | 382, 566, 695, 1187, 1205, 1652, 1777, 1914, 2092 |
| FriOI | GRGCYC | 5 cut(s) | 93, 375, 486, 526, 999 |
| FspBI | CTAG | 3 cut(s) | 213, 1884, 2180 |
| GlaI | GCGC | 7 cut(s) | 15, 133, 227, 329, 505, 725, 739 |
| GsaI | CCCAGC | 2 cut(s) | 277, 378 |
| GsuI | CTGGAG | 2 cut(s) | 1613, 2273 |
| HaeII | RGCGCY | 4 cut(s) | 17, 135, 331, 507 |
| HaeIII | GGCC | 6 cut(s) | 237, 272, 308, 318, 627, 717 |
| HapII | CCGG | 4 cut(s) | 189, 220, 269, 287 |
| HgaI | GACGC | 4 cut(s) | 64, 674, 1229, 1388 |
| HhaI | GCGC | 7 cut(s) | 16, 134, 228, 330, 506, 726, 740 |
| Hin1I | GRCGYC | 3 cut(s) | 132, 666, 1240 |
| Hin6I | GCGC | 7 cut(s) | 14, 132, 226, 328, 504, 724, 738 |
| HinP1I | GCGC | 7 cut(s) | 14, 132, 226, 328, 504, 724, 738 |
| HincII | GTYRAC | 3 cut(s) | 514, 664, 2152 |
| HindII | GTYRAC | 3 cut(s) | 514, 664, 2152 |
| HpaII | CCGG | 4 cut(s) | 189, 220, 269, 287 |
| HphI | GGTGA | 5 cut(s) | 869, 1121, 1293, 1814, 1841 |
| Hpy166II | GTNNAC | 5 cut(s) | 493, 514, 664, 959, 2152 |
| Hpy188III | TCNNGA | 6 cut(s) | 213, 405, 610, 878, 1232, 2180 |
| Hpy8I | GTNNAC | 5 cut(s) | 493, 514, 664, 959, 2152 |
| Hpy99I | CGWCG | 1 cut(s) | 1245 |
| HpyAV | CCTTC | 6 cut(s) | 47, 385, 832, 1515, 1565, 1875 |
| HpyCH4III | ACNGT | 2 cut(s) | 1168, 2408 |
| HpyCH4IV | ACGT | 1 cut(s) | 2455 |
| HpyF3I | CTNAG | 5 cut(s) | 21, 43, 81, 588, 1038 |
| HpySE526I | ACGT | 1 cut(s) | 2455 |
| Hsp92I | GRCGYC | 3 cut(s) | 132, 666, 1240 |
| HspAI | GCGC | 7 cut(s) | 14, 132, 226, 328, 504, 724, 738 |
| KasI | GGCGCC | 1 cut(s) | 131 |
| KflI | GGGWCCC | 1 cut(s) | 192 |
| Ksp22I | TGATCA | 1 cut(s) | 1600 |
| Kzo9I | GATC | 8 cut(s) | 167, 343, 1465, 1558, 1566, 1600, 2185, 2297 |
| LmnI | GCTCC | 4 cut(s) | 88, 96, 370, 636 |
| Lsp1109I | GCAGC | 5 cut(s) | 493, 1123, 1444, 1630, 2340 |
| LweI | GCATC | 8 cut(s) | 404, 673, 1123, 1630, 1666, 1799, 1936, 2280 |
| MabI | ACCWGGT | 2 cut(s) | 144, 1303 |
| MaeI | CTAG | 3 cut(s) | 213, 1884, 2180 |
| MaeII | ACGT | 1 cut(s) | 2455 |
| MaeIII | GTNAC | 7 cut(s) | 52, 1067, 1299, 1717, 1847, 2060, 2073 |
| MalI | GATC | 8 cut(s) | 169, 345, 1467, 1560, 1568, 1602, 2187, 2299 |
| MbiI | CCGCTC | 1 cut(s) | 123 |
| MboI | GATC | 8 cut(s) | 167, 343, 1465, 1558, 1566, 1600, 2185, 2297 |
| MfeI | CAATTG | 1 cut(s) | 1971 |
| MflI | RGATCY | 4 cut(s) | 343, 1465, 1558, 2185 |
| MhlI | GDGCHC | 5 cut(s) | 93, 375, 486, 526, 999 |
| MlsI | TGGCCA | 1 cut(s) | 627 |
| MluNI | TGGCCA | 1 cut(s) | 627 |
| Mly113I | GGCGCC | 1 cut(s) | 132 |
| MlyI | GAGTC | 4 cut(s) | 225, 827, 1307, 1343 |
| MmeI | TCCRAC | 4 cut(s) | 66, 680, 1334, 1364 |
| Mox20I | TGGCCA | 1 cut(s) | 627 |
| MroXI | GAANNNNTTC | 1 cut(s) | 329 |
| MscI | TGGCCA | 1 cut(s) | 627 |
| MseI | TTAA | 5 cut(s) | 834, 948, 1188, 1445, 1578 |
| MslI | CAYNNNNRTG | 3 cut(s) | 855, 1857, 2069 |
| Msp20I | TGGCCA | 1 cut(s) | 627 |
| MspI | CCGG | 4 cut(s) | 189, 220, 269, 287 |
| MspR9I | CCNGG | 7 cut(s) | 146, 190, 269, 287, 305, 341, 1305 |
| MunI | CAATTG | 1 cut(s) | 1971 |
| MvaI | CCWGG | 4 cut(s) | 146, 305, 341, 1305 |
| MvnI | CGCG | 2 cut(s) | 228, 738 |
| NarI | GGCGCC | 1 cut(s) | 132 |
| NciI | CCSGG | 3 cut(s) | 190, 269, 287 |
| NdeII | GATC | 8 cut(s) | 167, 343, 1465, 1558, 1566, 1600, 2185, 2297 |
| NlaIV | GGNNCC | 9 cut(s) | 133, 153, 193, 194, 345, 372, 1432, 1822, 2082 |
| NmeAIII | GCCGAG | 1 cut(s) | 693 |
| NmuCI | GTSAC | 6 cut(s) | 52, 1067, 1299, 1847, 2060, 2073 |
| NspI | RCATGY | 2 cut(s) | 1259, 2141 |
| NspV | TTCGAA | 1 cut(s) | 1273 |
| PagI | TCATGA | 1 cut(s) | 609 |
| PciI | ACATGT | 1 cut(s) | 2137 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 135, 360 |
| PdmI | GAANNNNTTC | 1 cut(s) | 329 |
| PfeI | GAWTC | 7 cut(s) | 1030, 1100, 1263, 1529, 1658, 1967, 2240 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 148, 2173 |
| PleI | GAGTC | 4 cut(s) | 224, 826, 1306, 1342 |
| PluTI | GGCGCC | 1 cut(s) | 135 |
| PpsI | GAGTC | 4 cut(s) | 224, 826, 1306, 1342 |
| PpuMI | RGGWCCY | 1 cut(s) | 192 |
| PscI | ACATGT | 1 cut(s) | 2137 |
| PshBI | ATTAAT | 1 cut(s) | 1578 |
| Psp124BI | GAGCTC | 1 cut(s) | 93 |
| Psp5II | RGGWCCY | 1 cut(s) | 192 |
| Psp6I | CCWGG | 4 cut(s) | 144, 303, 339, 1303 |
| PspFI | CCCAGC | 2 cut(s) | 273, 374 |
| PspGI | CCWGG | 4 cut(s) | 144, 303, 339, 1303 |
| PspN4I | GGNNCC | 9 cut(s) | 133, 153, 193, 194, 345, 372, 1432, 1822, 2082 |
| PspPI | GGNCC | 8 cut(s) | 151, 192, 235, 271, 883, 1307, 1430, 1862 |
| PspPPI | RGGWCCY | 1 cut(s) | 192 |
| PstI | CTGCAG | 3 cut(s) | 511, 531, 1648 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1117, 1652 |
| PsuI | RGATCY | 4 cut(s) | 343, 1465, 1558, 2185 |
| RsaI | GTAC | 2 cut(s) | 1857, 2400 |
| RsaNI | GTAC | 2 cut(s) | 1856, 2399 |
| RseI | CAYNNNNRTG | 3 cut(s) | 855, 1857, 2069 |
| SacI | GAGCTC | 1 cut(s) | 93 |
| SalI | GTCGAC | 1 cut(s) | 512 |
| SaqAI | TTAA | 5 cut(s) | 834, 948, 1188, 1445, 1578 |
| Sau3AI | GATC | 8 cut(s) | 167, 343, 1465, 1558, 1566, 1600, 2185, 2297 |
| Sau96I | GGNCC | 8 cut(s) | 151, 192, 235, 271, 883, 1307, 1430, 1862 |
| SchI | GAGTC | 4 cut(s) | 225, 827, 1307, 1343 |
| ScrFI | CCNGG | 7 cut(s) | 146, 190, 269, 287, 305, 341, 1305 |
| SduI | GDGCHC | 5 cut(s) | 93, 375, 486, 526, 999 |
| SexAI | ACCWGGT | 2 cut(s) | 144, 1303 |
| SfaNI | GCATC | 8 cut(s) | 404, 673, 1123, 1630, 1666, 1799, 1936, 2280 |
| SfcI | CTRYAG | 3 cut(s) | 507, 527, 1644 |
| SfoI | GGCGCC | 1 cut(s) | 133 |
| SfuI | TTCGAA | 1 cut(s) | 1273 |
| SinI | GGWCC | 6 cut(s) | 151, 192, 883, 1307, 1430, 1862 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 855, 1857, 2069 |
| SmlI | CTYRAG | 1 cut(s) | 719 |
| SmoI | CTYRAG | 1 cut(s) | 719 |
| SspDI | GGCGCC | 1 cut(s) | 131 |
| SspI | AATATT | 2 cut(s) | 1480, 2446 |
| SspMI | CTAG | 3 cut(s) | 213, 1884, 2180 |
| SstI | GAGCTC | 1 cut(s) | 93 |
| StyD4I | CCNGG | 7 cut(s) | 144, 188, 267, 285, 303, 339, 1303 |
| StyI | CCWWGG | 1 cut(s) | 2013 |
| TaaI | ACNGT | 2 cut(s) | 1168, 2408 |
| TaiI | ACGT | 1 cut(s) | 2458 |
| TaqII | GACCGA | 1 cut(s) | 180 |
| TatI | WGTACW | 1 cut(s) | 1855 |
| TauI | GCSGC | 5 cut(s) | 8, 201, 226, 738, 756 |
| TfiI | GAWTC | 7 cut(s) | 1030, 1100, 1263, 1529, 1658, 1967, 2240 |
| Tru1I | TTAA | 5 cut(s) | 834, 948, 1188, 1445, 1578 |
| Tru9I | TTAA | 5 cut(s) | 834, 948, 1188, 1445, 1578 |
| TscAI | CASTG | 6 cut(s) | 635, 676, 1429, 2082, 2256, 2436 |
| TseFI | GTSAC | 6 cut(s) | 52, 1067, 1299, 1847, 2060, 2073 |
| TseI | GCWGC | 5 cut(s) | 506, 1111, 1457, 1643, 2328 |
| Tsp45I | GTSAC | 6 cut(s) | 52, 1067, 1299, 1847, 2060, 2073 |
| TspGWI | ACGGA | 1 cut(s) | 1679 |
| TspRI | CASTG | 6 cut(s) | 635, 676, 1429, 2082, 2256, 2436 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 148, 2173 |
| VpaK11BI | GGWCC | 6 cut(s) | 151, 192, 883, 1307, 1430, 1862 |
| VspI | ATTAAT | 1 cut(s) | 1578 |
| XapI | RAATTY | 6 cut(s) | 350, 532, 674, 1366, 1491, 1705 |
| XbaI | TCTAGA | 2 cut(s) | 212, 2179 |
| XceI | RCATGY | 2 cut(s) | 1259, 2141 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 142 |
| XmiI | GTMKAC | 2 cut(s) | 513, 958 |
| XmnI | GAANNNNTTC | 1 cut(s) | 329 |
| XspI | CTAG | 3 cut(s) | 213, 1884, 2180 |