Rroxscaffold_173G00435060

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000173
OG0006195
Physical Location & Seq
Reverse (-)
420432 .. 427453
7022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_173G00435060.1

Sequence Viewer

Length: 2784 bp
ATGGCGTCCTTGTTTTTGGACAAGAAGGTTGGAATTGCAGAATTAGGTGTGAGGAAGAGGAAACGAGGGAGGAAGCCCAAAGTGAAAGGGTCAGCAGGGTCCGGTGGCGAGGTACTGGGCATGCAGATTGTAAACAAGAACGGCGCTGCAGTTGACATCTGGGCTTTGCAGAACTCAGAAAACCCTTTTGGGGATGAGCTGAGGAGGAGGACGTTGGGTCTGGAGACTGAGGAGGAGTTGTTGGGTTTCATGAGGGAATTGGGTGGCCAGTGGGGAAGCAGGAGGAAGAAGAGGAAGATTGTCGACGCCACTGAATTCGGGGATGCCTTGCCTCTCGGTTGGAAGCTCTTGCTCGGCCTCAAGCGCAAGGAACGACGTGCTTGGATTTACTGCCGCCGATACATTAGTTATAAACCTAACTCATGGTTTTATACTTGCATGTCACTTGATATTTTCCAGCCCTACTGGACAACAATTTCTGTCCTGCAAGGAAGTTGCTTCTTTTTGGAGTCCTTCTTTGGTCTTAATAATGCTGAAAGGCAAGATGGTGATGGTGGTGAGAACATTCAGGAGGACTGTGTAATGGCTACCGAAAATCATGCTGATAAAGATGGAGAAAGAAGGCAAGATGTGAGCTCCAGCTCTGCTATACTGGTGTCTTCTATATCTAATGAGCTTGAGAATAAAGTTAGCGTATCGGAAATGGAAAATCTTGCTGAGGTTCAGATACATGACCTTTTTGAATGTCACAAATGCAGTATGACTTTTGCCGAGAAGGATTCATATTTGCAGCATCTATTGTCCTTTCACCAGAGGACTACAAGGAGGTATAGACTTGGTTCGACAGTTGGGGACGGTGTGATAATTAAGGATGGGAAATATGAGTGCCAGTTCTGCCATAAGGTATTTCTGGAAAGGCGTCGCTATAATGGGCATGTAGGAATCCATGTTCGAAATTATGTGAGGAGGGTGGAAGAGTCGCCAGCTCCAACAACTCTTCAAAAGAAAATAGAGTCTCCAACAAGGGAAGGTTTGCCATCAAGGAACTCTAAAATGGATGCTTTGATTGAAATTGCTCAAAACTCTATCCTCGAAACCTCCACTGCTGGACCAAATGAGGAACTAAAAGGTGGTACTACACCAGATCCATACATCAATATTAGTTCGGAAACTCCCGCTTCCAATAAACTCCCTTCCAATTCTCATCTAGAAATGAACATAGAATCTAAACTGACTGAACAGGACCTGGAAGATCTTATGATTGATGGAATTAATGAAGATGAGCAAGAGAGTGAGCATACAATAACTGATGGAAGTATGGAGGAAGCTGTTGATGCTATGGAAGTTGTAGATGATAAGGTGAATTCTTGTTTGGTTACCACTGCCTCATCTGCTGAAGAGAAAAATGGGAAGACATCTGAAAGGTCTGTGGAGATAAATGGTCTGGCACCCACCTCTGATGAATTGGAGATGTCTGGCACCAAGCAGGAGAATGCTTCTGAATGTCCCCATGTGCATGCTTCTTCAAATAATAAATCTATTAGTGATGTTGCGGACAATGTAAAATGTGCACCTGCATTAGAGCATCCCAGTCCCGTTGAAGTCGATAAACAAAAGCATACTGAACCAATTGGTAGCGTCGATCAACCTCAACCAGCTAATGATAGTTCCTTGGAGTTCCATGCTTCTAACAGAAATGAACTCCAAAGTGGGGTTTGTGACACCTCAATGTCATTAGTGCGACCATTGCTCTGTCTTCCCACATCCAATGCAATTTTGCAGAAGGGAGACGAACATCTTATTGGTGTTGGCCAGAGCAGTGACCATTTAATGGATCTAGAGGATCTGCAACAACATGAAATAGAACATCTGAAGCATGGTTCTGCTGCTGGGCACGAATCTTTTATACTAGAGGAGGTACCGATTGATATGACAAATAGTTCAGAGATGCAAAGACCAGTTGGTTCCTCTGTCCAGTTTGAACCAGAAGAAGTGATGCTAAACATGGCTGGCAGCAATCAGCTTACAACTGCTTGTATCTGGTGTGGAGTAGATTTCAAACACGAGGCTGTTGATTATGATGTACAACCCGATTCTGTTGGCTTTATGTCCGACTGCATTCGCATACTATCAGAAGAAGAAGGGCAACCGAAAGAGCTGACTCCCACAAAGAAGAACATAGAGAAATCCCTGAAATGGCTTGTGGAGGGGTGCCAGGCAGGAGATTCGTTGGTGTTCTACTTCTCAGGACACGGGCTACGGCAGCCCGATTTCAAAGACGACGAGGTTGACGGGTTCGACGAGACTATATGCCCTGTTGATTTCATGGAAGAGGGCATGATCCTTGACAATGATATCAATTCAACCATCGTTCACCCACTTAAGGAGGGCGTCACCCTTCATGCTATTGTTGATGCTTGTCATAGTGGAACAATTCTTGATCTACTCTACGTCTACGACCATAAAGGGAACAAGTGGAAGGATAATAGTCCTCCTTCTGGTGCTAGGAAAAGTACAAGTGGAGGGTTGGCAATTTGCATTAGTGCCTGCAAAGACGATAAAATGGCAGCAGATACAACTGCTTTTGATCGAAATGTAATGAATGGTGCCATGACATACATTCTCATTGAAATTATTAAGAACCACTCTGGTAAAGGCATAACGTATGGGGAACTGCTCGACTTCATGTTTGATCAAATTCAAAGGATTAATGGGGATAGATGCCTCAACTCCAGAATCTTGAGAAAAGTTTTTCGACACAAAATCATTCAGGTCTTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBD

Protein Analysis

927

Amino Acids

103.27

Weight (kDa)

5.08

Isoelectric Point (pI)

56.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 721 - 897 1.9e-21 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AarI CACCTGC 1 cut(s) 1582
Acc36I ACCTGC 1 cut(s) 1582
Acc65I GGTACC 1 cut(s) 1918
AccB1I GGYRCC 5 cut(s) 1447, 1478, 1918, 2211, 2606
AccB7I CCANNNNNTGG 1 cut(s) 1831
AccI GTMKAC 2 cut(s) 303, 2454
AciI CCGC 3 cut(s) 394, 1176, 1553
AclWI GGATC 4 cut(s) 1139, 1842, 1851, 2335
AcoI YGGCCR 2 cut(s) 265, 1810
AcsI RAATTY 3 cut(s) 314, 1363, 2697
AcuI CTGAAG 2 cut(s) 1416, 1892
AcyI GRCGYC 4 cut(s) 5, 306, 919, 2391
AfaI GTAC 5 cut(s) 114, 1135, 1920, 2085, 2515
AfiI CCNNNNNNNGG 6 cut(s) 190, 1711, 1831, 2196, 2383, 2498
AflII CTTAAG 1 cut(s) 2381
AhdI GACNNNNNGTC 1 cut(s) 216
AjiI CACGTC 1 cut(s) 377
AjnI CCWGG 2 cut(s) 1245, 2214
AjuI GAANNNNNNNTTGG 6 cut(s) 171, 203, 1355, 1387, 1785, 1817
AloI GAACNNNNNNTCC 2 cut(s) 933, 965
Alw21I GWGCWC 2 cut(s) 638, 1573
Alw26I GTCTC 4 cut(s) 218, 1020, 1782, 2297
Alw44I GTGCAC 1 cut(s) 1569
AlwI GGATC 4 cut(s) 1139, 1842, 1851, 2335
AlwNI CAGNNNCTG 1 cut(s) 1246
AoxI GGCC 3 cut(s) 265, 355, 1810
ApaLI GTGCAC 1 cut(s) 1569
ApeKI GCWGC 6 cut(s) 146, 790, 1886, 2013, 2263, 2567
ApoI RAATTY 3 cut(s) 314, 1363, 2697
ArsI GACNNNNNNTTYG 2 cut(s) 2672, 2704
AseI ATTAAT 2 cut(s) 1272, 2709
Asp718I GGTACC 1 cut(s) 1918
AspLEI GCGC 2 cut(s) 146, 366
AspS9I GGNCC 3 cut(s) 99, 1109, 1243
AsuHPI GGTGA 6 cut(s) 560, 569, 800, 1372, 2366, 2386
AsuII TTCGAA 1 cut(s) 952
AvaII GGWCC 3 cut(s) 99, 1109, 1243
BaeGI GKGCMC 2 cut(s) 1573, 1896
BaeI ACNNNNGTAYC 2 cut(s) 391, 424
BalI TGGCCA 2 cut(s) 267, 1812
BanI GGYRCC 5 cut(s) 1447, 1478, 1918, 2211, 2606
BanII GRGCYC 1 cut(s) 638
BauI CACGAG 1 cut(s) 2063
BbsI GAAGAC 3 cut(s) 651, 1418, 1748
Bbv12I GWGCWC 2 cut(s) 638, 1573
BbvCI CCTCAGC 2 cut(s) 200, 717
BbvI GCAGC 6 cut(s) 133, 802, 1873, 2025, 2275, 2579
BccI CCATC 8 cut(s) 539, 545, 605, 866, 1045, 1259, 1304, 2375
BceAI ACGGC 2 cut(s) 157, 2276
BcgI CGANNNNNNTGC 4 cut(s) 581, 615, 2208, 2242
BciT130I CCWGG 2 cut(s) 1247, 2216
BclI TGATCA 1 cut(s) 2692
BcoDI GTCTC 4 cut(s) 218, 1020, 1782, 2297
BfaI CTAG 4 cut(s) 1208, 1838, 1910, 2505
BfmI CTRYAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 147
BfrI CTTAAG 1 cut(s) 2381
BfuAI ACCTGC 1 cut(s) 1582
BglII AGATCT 1 cut(s) 1252
BisI GCNGC 7 cut(s) 147, 394, 791, 1887, 2014, 2264, 2568
BlsI GCNGC 7 cut(s) 148, 395, 792, 1888, 2015, 2265, 2569
Bme1390I CCNGG 2 cut(s) 1247, 2216
Bme18I GGWCC 3 cut(s) 99, 1109, 1243
BmeRI GACNNNNNGTC 1 cut(s) 216
BmgBI CACGTC 1 cut(s) 377
BmgT120I GGNCC 3 cut(s) 99, 1109, 1243
BmiI GGNNCC 7 cut(s) 100, 1449, 1480, 1920, 1966, 2213, 2608
BmrFI CCNGG 2 cut(s) 1247, 2216
BmrI ACTGGG 2 cut(s) 125, 1584
BmsI GCATC 9 cut(s) 313, 802, 1048, 1324, 1594, 1938, 1986, 2404, 2711
BmuI ACTGGG 2 cut(s) 125, 1584
BpiI GAAGAC 3 cut(s) 651, 1418, 1748
BpmI CTGGAG 3 cut(s) 242, 622, 2716
Bpu10I CCTNAGC 2 cut(s) 200, 717
Bpu14I TTCGAA 1 cut(s) 952
BpuEI CTTGAG 3 cut(s) 344, 698, 2761
BsaHI GRCGYC 4 cut(s) 5, 306, 919, 2391
BsaJI CCNNGG 1 cut(s) 1671
BsaWI WCCGGW 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 6 cut(s) 190, 1711, 1831, 2196, 2383, 2498
Bse1I ACTGG 8 cut(s) 120, 268, 470, 657, 889, 1590, 1958, 1975
Bse3DI GCAATG 1 cut(s) 1745
BseBI CCWGG 2 cut(s) 1247, 2216
BseDI CCNNGG 1 cut(s) 1671
BseGI GGATG 6 cut(s) 199, 328, 877, 1063, 1585, 1763
BseLI CCNNNNNNNGG 6 cut(s) 190, 1711, 1831, 2196, 2383, 2498
BseMI GCAATG 1 cut(s) 1745
BseMII CTCAG 5 cut(s) 189, 191, 219, 708, 2259
BseNI ACTGG 8 cut(s) 120, 268, 470, 657, 889, 1590, 1958, 1975
BseRI GAGGAG 6 cut(s) 217, 220, 245, 248, 979, 1928
BseSI GKGCMC 2 cut(s) 1573, 1896
BseXI GCAGC 6 cut(s) 133, 802, 1873, 2025, 2275, 2579
BseYI CCCAGC 1 cut(s) 1889
BshFI GGCC 3 cut(s) 267, 357, 1812
BshNI GGYRCC 5 cut(s) 1447, 1478, 1918, 2211, 2606
BsiHKAI GWGCWC 2 cut(s) 638, 1573
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 3 cut(s) 866, 1491, 1578
BslI CCNNNNNNNGG 6 cut(s) 190, 1711, 1831, 2196, 2383, 2498
BsmAI GTCTC 4 cut(s) 218, 1020, 1782, 2297
BsmBI CGTCTC 1 cut(s) 1782
BsmFI GGGAC 3 cut(s) 866, 1491, 1578
BsmI GAATGC 2 cut(s) 1498, 2118
BsnI GGCC 3 cut(s) 267, 357, 1812
Bsp119I TTCGAA 1 cut(s) 952
Bsp1286I GDGCHC 3 cut(s) 638, 1573, 1896
Bsp1407I TGTACA 1 cut(s) 2083
Bsp143I GATC 9 cut(s) 1144, 1252, 1642, 1834, 1843, 2340, 2440, 2587, 2692
BspACI CCGC 3 cut(s) 394, 1176, 1553
BspANI GGCC 3 cut(s) 267, 357, 1812
BspCNI CTCAG 5 cut(s) 188, 192, 220, 709, 2258
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 7 cut(s) 100, 1449, 1480, 1920, 1966, 2213, 2608
BspMAI CTGCAG 1 cut(s) 151
BspMI ACCTGC 1 cut(s) 1582
BspPI GGATC 4 cut(s) 1139, 1842, 1851, 2335
BspT104I TTCGAA 1 cut(s) 952
BspT107I GGYRCC 5 cut(s) 1447, 1478, 1918, 2211, 2606
BspTI CTTAAG 1 cut(s) 2381
BsrDI GCAATG 1 cut(s) 1745
BsrGI TGTACA 1 cut(s) 2083
BsrI ACTGG 8 cut(s) 120, 268, 470, 657, 889, 1590, 1958, 1975
BssECI CCNNGG 1 cut(s) 1671
BssMI GATC 9 cut(s) 1144, 1252, 1642, 1834, 1843, 2340, 2440, 2587, 2692
BssNI GRCGYC 4 cut(s) 5, 306, 919, 2391
BssSI CACGAG 1 cut(s) 2063
BssT1I CCWWGG 1 cut(s) 1671
Bst2BI CACGAG 1 cut(s) 2063
Bst2UI CCWGG 2 cut(s) 1247, 2216
Bst4CI ACNGT 3 cut(s) 578, 847, 857
Bst6I CTCTTC 6 cut(s) 50, 284, 969, 1002, 1392, 2325
BstACI GRCGYC 4 cut(s) 5, 306, 919, 2391
BstAFI CTTAAG 1 cut(s) 2381
BstAUI TGTACA 1 cut(s) 2083
BstBI TTCGAA 1 cut(s) 952
BstC8I GCNNGC 5 cut(s) 122, 984, 1518, 2011, 2548
BstDEI CTNAG 5 cut(s) 175, 200, 228, 717, 2245
BstEII GGTNACC 1 cut(s) 1375
BstF5I GGATG 6 cut(s) 199, 328, 877, 1063, 1585, 1763
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 2 cut(s) 146, 366
BstKTI GATC 9 cut(s) 1147, 1255, 1645, 1837, 1846, 2343, 2443, 2590, 2695
BstMAI GTCTC 4 cut(s) 218, 1020, 1782, 2297
BstMBI GATC 9 cut(s) 1144, 1252, 1642, 1834, 1843, 2340, 2440, 2587, 2692
BstMWI GCNNNNNNNGC 6 cut(s) 363, 894, 1334, 1391, 1747, 2263
BstNI CCWGG 2 cut(s) 1247, 2216
BstNSI RCATGY 4 cut(s) 124, 442, 938, 1520
BstPI GGTNACC 1 cut(s) 1375
BstSCI CCNGG 2 cut(s) 1245, 2214
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 2 cut(s) 1573, 1896
BstV1I GCAGC 6 cut(s) 133, 802, 1873, 2025, 2275, 2579
BstV2I GAAGAC 3 cut(s) 651, 1418, 1748
BstX2I RGATCY 4 cut(s) 1144, 1252, 1834, 1843
BstYI RGATCY 4 cut(s) 1144, 1252, 1834, 1843
BsuRI GGCC 3 cut(s) 267, 357, 1812
BtrI CACGTC 1 cut(s) 377
BtsCI GGATG 6 cut(s) 199, 328, 877, 1063, 1585, 1763
BtsI GCAGTG 3 cut(s) 1101, 1380, 1825
BtsIMutI CAGTG 5 cut(s) 275, 309, 1101, 1380, 1825
BveI ACCTGC 1 cut(s) 1582
Cac8I GCNNGC 5 cut(s) 122, 984, 1518, 2011, 2548
CaiI CAGNNNCTG 1 cut(s) 1246
CciI TCATGA 1 cut(s) 249
CfoI GCGC 2 cut(s) 146, 366
Cfr13I GGNCC 3 cut(s) 99, 1109, 1243
CseI GACGC 4 cut(s) 314, 908, 1627, 2380
Csp6I GTAC 5 cut(s) 113, 1134, 1919, 2084, 2514
CviQI GTAC 5 cut(s) 113, 1134, 1919, 2084, 2514
DdeI CTNAG 5 cut(s) 175, 200, 228, 717, 2245
DpnI GATC 9 cut(s) 1146, 1254, 1644, 1836, 1845, 2342, 2442, 2589, 2694
DpnII GATC 9 cut(s) 1144, 1252, 1642, 1834, 1843, 2340, 2440, 2587, 2692
DriI GACNNNNNGTC 1 cut(s) 216
EaeI YGGCCR 2 cut(s) 265, 1810
Eam1104I CTCTTC 6 cut(s) 50, 284, 969, 1002, 1392, 2325
Eam1105I GACNNNNNGTC 1 cut(s) 216
EarI CTCTTC 6 cut(s) 50, 284, 969, 1002, 1392, 2325
Ecl136II GAGCTC 1 cut(s) 636
Eco130I CCWWGG 1 cut(s) 1671
Eco24I GRGCYC 1 cut(s) 638
Eco32I GATATC 1 cut(s) 2356
Eco47I GGWCC 3 cut(s) 99, 1109, 1243
Eco53kI GAGCTC 1 cut(s) 636
Eco57I CTGAAG 2 cut(s) 1416, 1892
Eco91I GGTNACC 1 cut(s) 1375
EcoICRI GAGCTC 1 cut(s) 636
EcoO109I RGGNCCY 1 cut(s) 1243
EcoO65I GGTNACC 1 cut(s) 1375
EcoRI GAATTC 2 cut(s) 314, 1363
EcoRII CCWGG 2 cut(s) 1245, 2214
EcoRV GATATC 1 cut(s) 2356
EcoT14I CCWWGG 1 cut(s) 1671
EcoT38I GRGCYC 1 cut(s) 638
ErhI CCWWGG 1 cut(s) 1671
Esp3I CGTCTC 1 cut(s) 1782
FaqI GGGAC 3 cut(s) 866, 1491, 1578
FauI CCCGC 1 cut(s) 1183
FbaI TGATCA 1 cut(s) 2692
FblI GTMKAC 2 cut(s) 303, 2454
Fnu4HI GCNGC 7 cut(s) 147, 394, 791, 1887, 2014, 2264, 2568
FokI GGATG 6 cut(s) 206, 335, 884, 1070, 1572, 1750
FriOI GRGCYC 1 cut(s) 638
Fsp4HI GCNGC 7 cut(s) 147, 394, 791, 1887, 2014, 2264, 2568
FspBI CTAG 4 cut(s) 1208, 1838, 1910, 2505
GlaI GCGC 2 cut(s) 145, 365
GluI GCNGC 7 cut(s) 147, 394, 791, 1887, 2014, 2264, 2568
GsaI CCCAGC 1 cut(s) 1893
GsuI CTGGAG 3 cut(s) 242, 622, 2716
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 3 cut(s) 267, 357, 1812
HapII CCGG 1 cut(s) 102
HgaI GACGC 4 cut(s) 314, 908, 1627, 2380
HhaI GCGC 2 cut(s) 146, 366
Hin1I GRCGYC 4 cut(s) 5, 306, 919, 2391
Hin6I GCGC 2 cut(s) 144, 364
HinP1I GCGC 2 cut(s) 144, 364
HincII GTYRAC 3 cut(s) 154, 304, 2290
HindII GTYRAC 3 cut(s) 154, 304, 2290
HpaII CCGG 1 cut(s) 102
HphI GGTGA 6 cut(s) 560, 569, 800, 1372, 2366, 2386
Hpy166II GTNNAC 7 cut(s) 133, 154, 304, 1571, 2290, 2374, 2455
Hpy8I GTNNAC 7 cut(s) 133, 154, 304, 1571, 2290, 2374, 2455
Hpy99I CGWCG 6 cut(s) 308, 378, 924, 1643, 2285, 2303
HpyCH4III ACNGT 3 cut(s) 578, 847, 857
HpyCH4IV ACGT 4 cut(s) 212, 376, 2451, 2663
HpyF10VI GCNNNNNNNGC 6 cut(s) 363, 894, 1334, 1391, 1747, 2263
HpyF3I CTNAG 5 cut(s) 175, 200, 228, 717, 2245
HpySE526I ACGT 4 cut(s) 212, 376, 2451, 2663
Hsp92I GRCGYC 4 cut(s) 5, 306, 919, 2391
HspAI GCGC 2 cut(s) 144, 364
KpnI GGTACC 1 cut(s) 1922
Ksp22I TGATCA 1 cut(s) 2692
Kzo9I GATC 9 cut(s) 1144, 1252, 1642, 1834, 1843, 2340, 2440, 2587, 2692
LmnI GCTCC 2 cut(s) 641, 991
Lsp1109I GCAGC 6 cut(s) 133, 802, 1873, 2025, 2275, 2579
LweI GCATC 9 cut(s) 313, 802, 1048, 1324, 1594, 1938, 1986, 2404, 2711
MaeI CTAG 4 cut(s) 1208, 1838, 1910, 2505
MaeII ACGT 4 cut(s) 212, 376, 2451, 2663
MaeIII GTNAC 6 cut(s) 441, 746, 1375, 1718, 1820, 2392
MalI GATC 9 cut(s) 1146, 1254, 1644, 1836, 1845, 2342, 2442, 2589, 2694
MboI GATC 9 cut(s) 1144, 1252, 1642, 1834, 1843, 2340, 2440, 2587, 2692
MfeI CAATTG 1 cut(s) 1629
MflI RGATCY 4 cut(s) 1144, 1252, 1834, 1843
MhlI GDGCHC 3 cut(s) 638, 1573, 1896
MlsI TGGCCA 2 cut(s) 267, 1812
MluNI TGGCCA 2 cut(s) 267, 1812
MlyI GAGTC 4 cut(s) 518, 986, 1022, 2155
MmeI TCCRAC 5 cut(s) 10, 320, 1013, 1043, 2136
Mox20I TGGCCA 2 cut(s) 267, 1812
MscI TGGCCA 2 cut(s) 267, 1812
MseI TTAA 7 cut(s) 525, 867, 1272, 1829, 2382, 2637, 2709
MslI CAYNNNNRTG 2 cut(s) 1515, 1727
Msp20I TGGCCA 2 cut(s) 267, 1812
MspCI CTTAAG 1 cut(s) 2381
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 1247, 2216
MunI CAATTG 1 cut(s) 1629
Mva1269I GAATGC 2 cut(s) 1498, 2118
MvaI CCWGG 2 cut(s) 1247, 2216
MwoI GCNNNNNNNGC 6 cut(s) 363, 894, 1334, 1391, 1747, 2263
NdeII GATC 9 cut(s) 1144, 1252, 1642, 1834, 1843, 2340, 2440, 2587, 2692
NlaIV GGNNCC 7 cut(s) 100, 1449, 1480, 1920, 1966, 2213, 2608
NmeAIII GCCGAG 2 cut(s) 333, 796
NmuCI GTSAC 5 cut(s) 441, 746, 1718, 1820, 2392
NspI RCATGY 4 cut(s) 124, 442, 938, 1520
NspV TTCGAA 1 cut(s) 952
PaeI GCATGC 2 cut(s) 124, 1520
PagI TCATGA 1 cut(s) 249
PaqCI CACCTGC 1 cut(s) 1582
PcsI WCGNNNNNNNCGW 1 cut(s) 2298
PctI GAATGC 2 cut(s) 1498, 2118
PfeI GAWTC 7 cut(s) 779, 942, 1223, 1898, 2093, 2225, 2736
PflMI CCANNNNNTGG 1 cut(s) 1831
PkrI GCNGC 7 cut(s) 148, 395, 792, 1888, 2015, 2265, 2569
PleI GAGTC 4 cut(s) 517, 985, 1021, 2155
PpsI GAGTC 4 cut(s) 517, 985, 1021, 2155
PpuMI RGGWCCY 1 cut(s) 1243
PshBI ATTAAT 2 cut(s) 1272, 2709
PsiI TTATAA 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 1243
Psp6I CCWGG 2 cut(s) 1245, 2214
PspEI GGTNACC 1 cut(s) 1375
PspFI CCCAGC 1 cut(s) 1889
PspGI CCWGG 2 cut(s) 1245, 2214
PspN4I GGNNCC 7 cut(s) 100, 1449, 1480, 1920, 1966, 2213, 2608
PspPI GGNCC 3 cut(s) 99, 1109, 1243
PspPPI RGGWCCY 1 cut(s) 1243
PstI CTGCAG 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 1246
PsuI RGATCY 4 cut(s) 1144, 1252, 1834, 1843
RsaI GTAC 5 cut(s) 114, 1135, 1920, 2085, 2515
RsaNI GTAC 5 cut(s) 113, 1134, 1919, 2084, 2514
RseI CAYNNNNRTG 2 cut(s) 1515, 1727
SacI GAGCTC 1 cut(s) 638
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 7 cut(s) 525, 867, 1272, 1829, 2382, 2637, 2709
SatI GCNGC 7 cut(s) 147, 394, 791, 1887, 2014, 2264, 2568
Sau3AI GATC 9 cut(s) 1144, 1252, 1642, 1834, 1843, 2340, 2440, 2587, 2692
Sau96I GGNCC 3 cut(s) 99, 1109, 1243
SchI GAGTC 4 cut(s) 518, 986, 1022, 2155
ScrFI CCNGG 2 cut(s) 1247, 2216
SduI GDGCHC 3 cut(s) 638, 1573, 1896
SfaNI GCATC 9 cut(s) 313, 802, 1048, 1324, 1594, 1938, 1986, 2404, 2711
SfcI CTRYAG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 952
SinI GGWCC 3 cut(s) 99, 1109, 1243
SmiMI CAYNNNNRTG 2 cut(s) 1515, 1727
SmlI CTYRAG 4 cut(s) 359, 677, 2381, 2740
SmoI CTYRAG 4 cut(s) 359, 677, 2381, 2740
SphI GCATGC 2 cut(s) 124, 1520
SsiI CCGC 3 cut(s) 394, 1176, 1553
SspI AATATT 1 cut(s) 1159
SspMI CTAG 4 cut(s) 1208, 1838, 1910, 2505
SstI GAGCTC 1 cut(s) 638
StyD4I CCNGG 2 cut(s) 1245, 2214
StyI CCWWGG 1 cut(s) 1671
TaaI ACNGT 3 cut(s) 578, 847, 857
TaiI ACGT 4 cut(s) 215, 379, 2454, 2666
TatI WGTACW 2 cut(s) 2083, 2513
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 7 cut(s) 779, 942, 1223, 1898, 2093, 2225, 2736
Tru1I TTAA 7 cut(s) 525, 867, 1272, 1829, 2382, 2637, 2709
Tru9I TTAA 7 cut(s) 525, 867, 1272, 1829, 2382, 2637, 2709
TscAI CASTG 5 cut(s) 275, 316, 1108, 1387, 1825
TseFI GTSAC 5 cut(s) 441, 746, 1718, 1820, 2392
TseI GCWGC 6 cut(s) 146, 790, 1886, 2013, 2263, 2567
Tsp45I GTSAC 5 cut(s) 441, 746, 1718, 1820, 2392
TspRI CASTG 5 cut(s) 275, 316, 1108, 1387, 1825
Van91I CCANNNNNTGG 1 cut(s) 1831
Vha464I CTTAAG 1 cut(s) 2381
VneI GTGCAC 1 cut(s) 1569
VpaK11BI GGWCC 3 cut(s) 99, 1109, 1243
VspI ATTAAT 2 cut(s) 1272, 2709
XapI RAATTY 3 cut(s) 314, 1363, 2697
XbaI TCTAGA 2 cut(s) 1207, 1837
XceI RCATGY 4 cut(s) 124, 442, 938, 1520
XmiI GTMKAC 2 cut(s) 303, 2454
XspI CTAG 4 cut(s) 1208, 1838, 1910, 2505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.