Rh6AG181100

zinc finger

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
31621800 .. 31635233
13434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG181100.1

Sequence Viewer

Length: 1770 bp
ATGTTTCCTTTTTATTTTTATTTTTTAGTTATAAACCTAACTCATGGTTTTATACTTGCATGTCACTTGATATTTTCCAGCCCTACTGGACAACAATTTCTGTCCTGCAAGGAAGTTGCTTCTTTTTTGGAGTCCTTCTTTGGTCTTAATAATGCTGAAAGGCAAGATGGTGATGGTGGTGAGAACATTCAGGAGGACTGTGTAATGGCTACCGAAAATCATGCTGATAAAGATGGAGAAAGAAGGCAAGATGTGAGCTCCAGCTCTGCTATACTGGTGTCTTCTATATCTAATGAGCCTGAGAATAAAGTTAGCGTATCGGAAATGGAAAATCTTGCTGAGGTTCAGATACATGACCTTTTTGAATGTCACAAATGCAGTATGACTTTTGCCGAGAAGGATTCATATTTGCAGCATCTATTGTCCTTTCACCAGAGGACTACAAGGAGGTATAGACTTGGTTCAACAGTTGGGGACGGTGTGATAATTAAGGATGGGAAATATGAGTGCCAGTTCTGCCATAAGGTGTTTCTGGAAAGGCGTCGCTATAATGGGCATGTAGGAATCCATGTTCGAAATTATGTGAGGAGGGTGGAAGAGTCACCAGCTCCAACAACTCTTCAAAAGAAAATTGAGTCTCCAACAAGGGAAGGTTTGCTATCAAGGAACTCTAAAATGGATGCTTTGATTGAAATTGCTCAAAACTCTATCCTCGAAACCTCCACTGCTGGACCAAATGAGGAATTAAAAGGTGGTACTACACCAGATCCATACATCAATATTAGTTCAGAAACTCCCACATCCAATAAACTCCCTTCCAATTCTCATCTAGAAATGAACATAGAATCTAAACTGACTGAACAGGACCTGGAAGATCTTATGATCGATGGAATTAATGAAGATGAGCAAGAGAGTGAGCATACAATAACTGATGGAAGTATGGAGGAAGCTGTTGATGCTATGGAAGTTGTAGATGATAAGGTGAATTCTTGTTTGGTTACCACTGCCTCATCTGCTGAAGAGAAAAATGGGAAGACATCTGAAAGGTCTGTGGAGATAAATGGTCTGGCACCCACCTCTGATGAATTGGAGATGCCTGGCACCAAGCAGGAGAATGCTTCTGAATGTCCCCATGTACATGCTTCTTCAAATAATAAATCTATTAGTGATGTTGCGGACACTGTAAAATGTGCACCTGCATTAGAGCATCCCAGTCCCGTTGAAGTCGATAAACAAAAGCATACTGAACCAATTGGTAGCATCGATCAACCTCAACCAGCTAATGATAGTTCCTTAGAGTTCCATGCTTCTAACAGAAATGAACTCCAAAGTGGGGTTTGTGACATCTCAATGTCATTGGTGCAACCATTGCTCTATCTTCCCACATCCAATGCAATTTTGCAGAAGGGAGACGAACATCTTATTGGTGTTGGCCAGAGCGGTGACCATGTAATGGATCTAGAGGATCTGCAACAACATGAAATAGAACATCTGAAGCATGGTTCTGCTGCTGGGCAAGAATCTTTTATACTAGAGGAGGTACCGATTGATATGACAAATAGTTCAGAGATGCAAAAATCAGTTGGTTCCTCTGTCCAGTTTGAACCAGAAGAAGTGATGCTAAACATGGCTGGCAGCAATCAGCTTACAACTGCTTGTATCTGGTGTGGAGTAGATTTCAAACACGAGGCTGTTGATTATGATGTACAACCCGATTCTGTTGGCTTTATGTGTCCAGTGTGCAAGGCGAAAATTTCTGAACGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

589

Amino Acids

65.17

Weight (kDa)

4.67

Isoelectric Point (pI)

63.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 32
AarI CACCTGC 1 cut(s) 1204
Acc36I ACCTGC 1 cut(s) 1204
Acc65I GGTACC 1 cut(s) 1540
AccB1I GGYRCC 3 cut(s) 1069, 1100, 1540
AccB7I CCANNNNNTGG 1 cut(s) 1453
AccBSI CCGCTC 1 cut(s) 1440
AciI CCGC 2 cut(s) 1175, 1440
AclWI GGATC 3 cut(s) 761, 1464, 1473
AcoI YGGCCR 1 cut(s) 1432
AcsI RAATTY 2 cut(s) 985, 1752
AcuI CTGAAG 2 cut(s) 1038, 1514
AcyI GRCGYC 1 cut(s) 541
AfaI GTAC 4 cut(s) 757, 1137, 1542, 1707
AfiI CCNNNNNNNGG 2 cut(s) 1333, 1453
AgsI TTSAA 8 cut(s) 365, 465, 623, 692, 1149, 1223, 1604, 1681
AjnI CCWGG 2 cut(s) 867, 1096
AjuI GAANNNNNNNTTGG 4 cut(s) 977, 1009, 1407, 1439
AloI GAACNNNNNNTCC 2 cut(s) 555, 587
AluBI AGCT 6 cut(s) 258, 264, 608, 950, 1280, 1645
AluI AGCT 6 cut(s) 258, 264, 608, 950, 1280, 1645
Alw21I GWGCWC 2 cut(s) 260, 1195
Alw26I GTCTC 2 cut(s) 642, 1404
Alw44I GTGCAC 1 cut(s) 1191
AlwI GGATC 3 cut(s) 761, 1464, 1473
AlwNI CAGNNNCTG 1 cut(s) 868
AoxI GGCC 1 cut(s) 1432
ApaLI GTGCAC 1 cut(s) 1191
ApeKI GCWGC 3 cut(s) 412, 1508, 1635
ApoI RAATTY 2 cut(s) 985, 1752
AseI ATTAAT 1 cut(s) 894
Asp718I GGTACC 1 cut(s) 1540
AspS9I GGNCC 2 cut(s) 731, 865
AsuHPI GGTGA 6 cut(s) 182, 191, 422, 594, 994, 1454
AsuII TTCGAA 1 cut(s) 574
AvaII GGWCC 2 cut(s) 731, 865
BaeGI GKGCMC 1 cut(s) 1195
BalI TGGCCA 1 cut(s) 1434
BanI GGYRCC 3 cut(s) 1069, 1100, 1540
BanII GRGCYC 1 cut(s) 260
BauI CACGAG 1 cut(s) 1685
BbsI GAAGAC 2 cut(s) 273, 1040
Bbv12I GWGCWC 2 cut(s) 260, 1195
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 3 cut(s) 424, 1495, 1647
BccI CCATC 6 cut(s) 161, 167, 227, 488, 881, 926
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 2 cut(s) 869, 1098
BcoDI GTCTC 2 cut(s) 642, 1404
BfaI CTAG 3 cut(s) 830, 1460, 1532
BfuAI ACCTGC 1 cut(s) 1204
BglII AGATCT 1 cut(s) 874
BisI GCNGC 3 cut(s) 413, 1509, 1636
BlsI GCNGC 3 cut(s) 414, 1510, 1637
Bme1390I CCNGG 2 cut(s) 869, 1098
Bme18I GGWCC 2 cut(s) 731, 865
BmgT120I GGNCC 2 cut(s) 731, 865
BmiI GGNNCC 4 cut(s) 1071, 1102, 1542, 1588
BmrFI CCNGG 2 cut(s) 869, 1098
BmrI ACTGGG 1 cut(s) 1206
BmsI GCATC 8 cut(s) 424, 670, 946, 1083, 1216, 1269, 1560, 1608
BmuI ACTGGG 1 cut(s) 1206
BpiI GAAGAC 2 cut(s) 273, 1040
BpmI CTGGAG 1 cut(s) 244
Bpu10I CCTNAGC 1 cut(s) 339
Bpu14I TTCGAA 1 cut(s) 574
Bsa29I ATCGAT 2 cut(s) 885, 1263
BsaHI GRCGYC 1 cut(s) 541
Bsc4I CCNNNNNNNGG 2 cut(s) 1333, 1453
Bse1I ACTGG 6 cut(s) 91, 279, 511, 1212, 1597, 1736
Bse3DI GCAATG 1 cut(s) 1367
BseBI CCWGG 2 cut(s) 869, 1098
BseCI ATCGAT 2 cut(s) 885, 1263
BseGI GGATG 5 cut(s) 499, 685, 800, 1207, 1385
BseLI CCNNNNNNNGG 2 cut(s) 1333, 1453
BseMI GCAATG 1 cut(s) 1367
BseMII CTCAG 2 cut(s) 291, 330
BseNI ACTGG 6 cut(s) 91, 279, 511, 1212, 1597, 1736
BseRI GAGGAG 2 cut(s) 601, 1550
BseSI GKGCMC 1 cut(s) 1195
BseXI GCAGC 3 cut(s) 424, 1495, 1647
BseYI CCCAGC 1 cut(s) 1511
BshFI GGCC 1 cut(s) 1434
BshNI GGYRCC 3 cut(s) 1069, 1100, 1540
BshVI ATCGAT 2 cut(s) 885, 1263
BsiHKAI GWGCWC 2 cut(s) 260, 1195
BslFI GGGAC 3 cut(s) 488, 1113, 1200
BslI CCNNNNNNNGG 2 cut(s) 1333, 1453
BsmAI GTCTC 2 cut(s) 642, 1404
BsmBI CGTCTC 1 cut(s) 1404
BsmFI GGGAC 3 cut(s) 488, 1113, 1200
BsmI GAATGC 1 cut(s) 1120
BsnI GGCC 1 cut(s) 1434
Bsp119I TTCGAA 1 cut(s) 574
Bsp1286I GDGCHC 2 cut(s) 260, 1195
Bsp1407I TGTACA 2 cut(s) 1135, 1705
Bsp143I GATC 6 cut(s) 766, 874, 882, 1264, 1456, 1465
BspACI CCGC 2 cut(s) 1175, 1440
BspANI GGCC 1 cut(s) 1434
BspCNI CTCAG 2 cut(s) 292, 331
BspDI ATCGAT 2 cut(s) 885, 1263
BspLI GGNNCC 4 cut(s) 1071, 1102, 1542, 1588
BspMI ACCTGC 1 cut(s) 1204
BspPI GGATC 3 cut(s) 761, 1464, 1473
BspT104I TTCGAA 1 cut(s) 574
BspT107I GGYRCC 3 cut(s) 1069, 1100, 1540
BsrBI CCGCTC 1 cut(s) 1440
BsrDI GCAATG 1 cut(s) 1367
BsrGI TGTACA 2 cut(s) 1135, 1705
BsrI ACTGG 6 cut(s) 91, 279, 511, 1212, 1597, 1736
BssMI GATC 6 cut(s) 766, 874, 882, 1264, 1456, 1465
BssNI GRCGYC 1 cut(s) 541
BssSI CACGAG 1 cut(s) 1685
Bst2BI CACGAG 1 cut(s) 1685
Bst2UI CCWGG 2 cut(s) 869, 1098
Bst4CI ACNGT 4 cut(s) 200, 469, 479, 1183
Bst6I CTCTTC 3 cut(s) 591, 624, 1014
BstACI GRCGYC 1 cut(s) 541
BstAPI GCANNNNNTGC 1 cut(s) 1369
BstAUI TGTACA 2 cut(s) 1135, 1705
BstBI TTCGAA 1 cut(s) 574
BstC8I GCNNGC 1 cut(s) 1633
BstDEI CTNAG 3 cut(s) 300, 339, 1294
BstEII GGTNACC 2 cut(s) 997, 1442
BstF5I GGATG 5 cut(s) 499, 685, 800, 1207, 1385
BstKTI GATC 6 cut(s) 769, 877, 885, 1267, 1459, 1468
BstMAI GTCTC 2 cut(s) 642, 1404
BstMBI GATC 6 cut(s) 766, 874, 882, 1264, 1456, 1465
BstMWI GCNNNNNNNGC 4 cut(s) 516, 956, 1013, 1369
BstNI CCWGG 2 cut(s) 869, 1098
BstNSI RCATGY 3 cut(s) 63, 560, 1142
BstPI GGTNACC 2 cut(s) 997, 1442
BstSCI CCNGG 2 cut(s) 867, 1096
BstSLI GKGCMC 1 cut(s) 1195
BstV1I GCAGC 3 cut(s) 424, 1495, 1647
BstV2I GAAGAC 2 cut(s) 273, 1040
BstX2I RGATCY 4 cut(s) 766, 874, 1456, 1465
BstYI RGATCY 4 cut(s) 766, 874, 1456, 1465
Bsu15I ATCGAT 2 cut(s) 885, 1263
BsuRI GGCC 1 cut(s) 1434
BsuTUI ATCGAT 2 cut(s) 885, 1263
BtsCI GGATG 5 cut(s) 499, 685, 800, 1207, 1385
BtsI GCAGTG 2 cut(s) 723, 1002
BtsIMutI CAGTG 4 cut(s) 723, 1002, 1179, 1743
BveI ACCTGC 1 cut(s) 1204
Cac8I GCNNGC 1 cut(s) 1633
CaiI CAGNNNCTG 1 cut(s) 868
Cfr13I GGNCC 2 cut(s) 731, 865
ClaI ATCGAT 2 cut(s) 885, 1263
CseI GACGC 1 cut(s) 530
Csp6I GTAC 4 cut(s) 756, 1136, 1541, 1706
CviQI GTAC 4 cut(s) 756, 1136, 1541, 1706
DdeI CTNAG 3 cut(s) 300, 339, 1294
DpnI GATC 6 cut(s) 768, 876, 884, 1266, 1458, 1467
DpnII GATC 6 cut(s) 766, 874, 882, 1264, 1456, 1465
EaeI YGGCCR 1 cut(s) 1432
Eam1104I CTCTTC 3 cut(s) 591, 624, 1014
EarI CTCTTC 3 cut(s) 591, 624, 1014
Ecl136II GAGCTC 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 731, 865
Eco53kI GAGCTC 1 cut(s) 258
Eco57I CTGAAG 2 cut(s) 1038, 1514
Eco91I GGTNACC 2 cut(s) 997, 1442
EcoICRI GAGCTC 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 865
EcoO65I GGTNACC 2 cut(s) 997, 1442
EcoRI GAATTC 1 cut(s) 985
EcoRII CCWGG 2 cut(s) 867, 1096
EcoT38I GRGCYC 1 cut(s) 260
Esp3I CGTCTC 1 cut(s) 1404
FaqI GGGAC 3 cut(s) 488, 1113, 1200
Fnu4HI GCNGC 3 cut(s) 413, 1509, 1636
FokI GGATG 5 cut(s) 506, 692, 787, 1194, 1372
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 413, 1509, 1636
FspBI CTAG 3 cut(s) 830, 1460, 1532
GluI GCNGC 3 cut(s) 413, 1509, 1636
GsaI CCCAGC 1 cut(s) 1515
GsuI CTGGAG 1 cut(s) 244
HaeIII GGCC 1 cut(s) 1434
HgaI GACGC 1 cut(s) 530
Hin1I GRCGYC 1 cut(s) 541
HinfI GANTC 8 cut(s) 131, 401, 564, 599, 635, 845, 1520, 1715
HphI GGTGA 6 cut(s) 182, 191, 422, 594, 994, 1454
Hpy166II GTNNAC 1 cut(s) 1193
Hpy188I TCNGA 9 cut(s) 322, 348, 790, 1042, 1081, 1123, 1494, 1567, 1759
Hpy188III TCNNGA 4 cut(s) 191, 533, 830, 1460
Hpy8I GTNNAC 1 cut(s) 1193
Hpy99I CGWCG 1 cut(s) 546
HpyAV CCTTC 6 cut(s) 145, 237, 391, 644, 825, 1399
HpyCH4III ACNGT 4 cut(s) 200, 469, 479, 1183
HpyCH4IV ACGT 1 cut(s) 1762
HpyF10VI GCNNNNNNNGC 4 cut(s) 516, 956, 1013, 1369
HpyF3I CTNAG 3 cut(s) 300, 339, 1294
HpySE526I ACGT 1 cut(s) 1762
Hsp92I GRCGYC 1 cut(s) 541
KpnI GGTACC 1 cut(s) 1544
Kzo9I GATC 6 cut(s) 766, 874, 882, 1264, 1456, 1465
LmnI GCTCC 2 cut(s) 263, 613
Lsp1109I GCAGC 3 cut(s) 424, 1495, 1647
LweI GCATC 8 cut(s) 424, 670, 946, 1083, 1216, 1269, 1560, 1608
MaeI CTAG 3 cut(s) 830, 1460, 1532
MaeII ACGT 1 cut(s) 1762
MaeIII GTNAC 6 cut(s) 62, 368, 600, 997, 1340, 1442
MalI GATC 6 cut(s) 768, 876, 884, 1266, 1458, 1467
MbiI CCGCTC 1 cut(s) 1440
MboI GATC 6 cut(s) 766, 874, 882, 1264, 1456, 1465
MfeI CAATTG 1 cut(s) 1251
MflI RGATCY 4 cut(s) 766, 874, 1456, 1465
MhlI GDGCHC 2 cut(s) 260, 1195
MlsI TGGCCA 1 cut(s) 1434
MluNI TGGCCA 1 cut(s) 1434
MlyI GAGTC 3 cut(s) 140, 608, 644
MmeI TCCRAC 2 cut(s) 635, 665
Mox20I TGGCCA 1 cut(s) 1434
MscI TGGCCA 1 cut(s) 1434
MseI TTAA 4 cut(s) 147, 489, 746, 894
MslI CAYNNNNRTG 2 cut(s) 1137, 1349
Msp20I TGGCCA 1 cut(s) 1434
MspR9I CCNGG 2 cut(s) 869, 1098
MunI CAATTG 1 cut(s) 1251
Mva1269I GAATGC 1 cut(s) 1120
MvaI CCWGG 2 cut(s) 869, 1098
MwoI GCNNNNNNNGC 4 cut(s) 516, 956, 1013, 1369
NdeII GATC 6 cut(s) 766, 874, 882, 1264, 1456, 1465
NlaIV GGNNCC 4 cut(s) 1071, 1102, 1542, 1588
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 5 cut(s) 62, 368, 600, 1340, 1442
NspI RCATGY 3 cut(s) 63, 560, 1142
NspV TTCGAA 1 cut(s) 574
PaqCI CACCTGC 1 cut(s) 1204
PctI GAATGC 1 cut(s) 1120
PfeI GAWTC 5 cut(s) 401, 564, 845, 1520, 1715
PflMI CCANNNNNTGG 1 cut(s) 1453
PkrI GCNGC 3 cut(s) 414, 1510, 1637
PleI GAGTC 3 cut(s) 139, 607, 643
PpsI GAGTC 3 cut(s) 139, 607, 643
PpuMI RGGWCCY 1 cut(s) 865
PshBI ATTAAT 1 cut(s) 894
PsiI TTATAA 1 cut(s) 32
Psp124BI GAGCTC 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 865
Psp6I CCWGG 2 cut(s) 867, 1096
PspEI GGTNACC 2 cut(s) 997, 1442
PspFI CCCAGC 1 cut(s) 1511
PspGI CCWGG 2 cut(s) 867, 1096
PspN4I GGNNCC 4 cut(s) 1071, 1102, 1542, 1588
PspPI GGNCC 2 cut(s) 731, 865
PspPPI RGGWCCY 1 cut(s) 865
PstNI CAGNNNCTG 1 cut(s) 868
PsuI RGATCY 4 cut(s) 766, 874, 1456, 1465
RsaI GTAC 4 cut(s) 757, 1137, 1542, 1707
RsaNI GTAC 4 cut(s) 756, 1136, 1541, 1706
RseI CAYNNNNRTG 2 cut(s) 1137, 1349
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 4 cut(s) 147, 489, 746, 894
SatI GCNGC 3 cut(s) 413, 1509, 1636
Sau3AI GATC 6 cut(s) 766, 874, 882, 1264, 1456, 1465
Sau96I GGNCC 2 cut(s) 731, 865
SchI GAGTC 3 cut(s) 140, 608, 644
ScrFI CCNGG 2 cut(s) 869, 1098
SduI GDGCHC 2 cut(s) 260, 1195
SfaNI GCATC 8 cut(s) 424, 670, 946, 1083, 1216, 1269, 1560, 1608
SfuI TTCGAA 1 cut(s) 574
SinI GGWCC 2 cut(s) 731, 865
SmiMI CAYNNNNRTG 2 cut(s) 1137, 1349
SsiI CCGC 2 cut(s) 1175, 1440
SspI AATATT 1 cut(s) 781
SspMI CTAG 3 cut(s) 830, 1460, 1532
SstI GAGCTC 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 867, 1096
TaaI ACNGT 4 cut(s) 200, 469, 479, 1183
TaiI ACGT 1 cut(s) 1765
TaqI TCGA 5 cut(s) 574, 714, 885, 1227, 1263
TatI WGTACW 2 cut(s) 1135, 1705
TfiI GAWTC 5 cut(s) 401, 564, 845, 1520, 1715
Tru1I TTAA 4 cut(s) 147, 489, 746, 894
Tru9I TTAA 4 cut(s) 147, 489, 746, 894
TscAI CASTG 4 cut(s) 730, 1009, 1186, 1743
TseFI GTSAC 5 cut(s) 62, 368, 600, 1340, 1442
TseI GCWGC 3 cut(s) 412, 1508, 1635
Tsp45I GTSAC 5 cut(s) 62, 368, 600, 1340, 1442
TspDTI ATGAA 6 cut(s) 393, 851, 912, 1098, 1335, 1494
TspRI CASTG 4 cut(s) 730, 1009, 1186, 1743
Van91I CCANNNNNTGG 1 cut(s) 1453
VneI GTGCAC 1 cut(s) 1191
VpaK11BI GGWCC 2 cut(s) 731, 865
VspI ATTAAT 1 cut(s) 894
XapI RAATTY 2 cut(s) 985, 1752
XbaI TCTAGA 2 cut(s) 829, 1459
XceI RCATGY 3 cut(s) 63, 560, 1142
XspI CTAG 3 cut(s) 830, 1460, 1532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.