zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G22310 AT1G22310 |
| fragaria_vesca | FvH4_2g11920 FvH4_2g11920 |
| malus_domestica | MD05G1043400.v1.1 MD10G1050700.v1.1 |
| prunus_persica | Prupe.8G062800_v2.0.a1 Prupe.8G062800_v2.0.a1 |
| pyrus_communis | pycom05g03580 pycom05g03610 pycom10g03570 |
| rosa_chinensis | RchiOBHm_Chr6g0271611 RchiOBHm_Chr6g0271621 RchiOBHm_Chr6g0271751 RchiOBHm_Chr6g0271781 |
| rosa_laevigata | RLG00000013717 RLG00000013732 |
| rosa_multiflora | Rmu_co8510743.1_g000001 Rmu_sc0002396.1_g000008 |
| rosa_roxburghii | Rroxscaffold_173G00435060 Rroxscaffold_7G00196650 |
| rosa_rugosa | Rorug06G0062300 |
| rosa_samantha | Rh6AG181100 Rh6BG186200 Rh6CG180700 Rh6CG181600 |
| rosa_wichuraiana | Rw6G015530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 32 |
| AarI | CACCTGC | 1 cut(s) | 1204 |
| Acc36I | ACCTGC | 1 cut(s) | 1204 |
| Acc65I | GGTACC | 1 cut(s) | 1540 |
| AccB1I | GGYRCC | 3 cut(s) | 1069, 1100, 1540 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1453 |
| AccBSI | CCGCTC | 1 cut(s) | 1440 |
| AciI | CCGC | 2 cut(s) | 1175, 1440 |
| AclWI | GGATC | 3 cut(s) | 761, 1464, 1473 |
| AcoI | YGGCCR | 1 cut(s) | 1432 |
| AcsI | RAATTY | 2 cut(s) | 985, 1752 |
| AcuI | CTGAAG | 2 cut(s) | 1038, 1514 |
| AcyI | GRCGYC | 1 cut(s) | 541 |
| AfaI | GTAC | 4 cut(s) | 757, 1137, 1542, 1707 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1333, 1453 |
| AgsI | TTSAA | 8 cut(s) | 365, 465, 623, 692, 1149, 1223, 1604, 1681 |
| AjnI | CCWGG | 2 cut(s) | 867, 1096 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 977, 1009, 1407, 1439 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 555, 587 |
| AluBI | AGCT | 6 cut(s) | 258, 264, 608, 950, 1280, 1645 |
| AluI | AGCT | 6 cut(s) | 258, 264, 608, 950, 1280, 1645 |
| Alw21I | GWGCWC | 2 cut(s) | 260, 1195 |
| Alw26I | GTCTC | 2 cut(s) | 642, 1404 |
| Alw44I | GTGCAC | 1 cut(s) | 1191 |
| AlwI | GGATC | 3 cut(s) | 761, 1464, 1473 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 868 |
| AoxI | GGCC | 1 cut(s) | 1432 |
| ApaLI | GTGCAC | 1 cut(s) | 1191 |
| ApeKI | GCWGC | 3 cut(s) | 412, 1508, 1635 |
| ApoI | RAATTY | 2 cut(s) | 985, 1752 |
| AseI | ATTAAT | 1 cut(s) | 894 |
| Asp718I | GGTACC | 1 cut(s) | 1540 |
| AspS9I | GGNCC | 2 cut(s) | 731, 865 |
| AsuHPI | GGTGA | 6 cut(s) | 182, 191, 422, 594, 994, 1454 |
| AsuII | TTCGAA | 1 cut(s) | 574 |
| AvaII | GGWCC | 2 cut(s) | 731, 865 |
| BaeGI | GKGCMC | 1 cut(s) | 1195 |
| BalI | TGGCCA | 1 cut(s) | 1434 |
| BanI | GGYRCC | 3 cut(s) | 1069, 1100, 1540 |
| BanII | GRGCYC | 1 cut(s) | 260 |
| BauI | CACGAG | 1 cut(s) | 1685 |
| BbsI | GAAGAC | 2 cut(s) | 273, 1040 |
| Bbv12I | GWGCWC | 2 cut(s) | 260, 1195 |
| BbvCI | CCTCAGC | 1 cut(s) | 339 |
| BbvI | GCAGC | 3 cut(s) | 424, 1495, 1647 |
| BccI | CCATC | 6 cut(s) | 161, 167, 227, 488, 881, 926 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 203, 237 |
| BciT130I | CCWGG | 2 cut(s) | 869, 1098 |
| BcoDI | GTCTC | 2 cut(s) | 642, 1404 |
| BfaI | CTAG | 3 cut(s) | 830, 1460, 1532 |
| BfuAI | ACCTGC | 1 cut(s) | 1204 |
| BglII | AGATCT | 1 cut(s) | 874 |
| BisI | GCNGC | 3 cut(s) | 413, 1509, 1636 |
| BlsI | GCNGC | 3 cut(s) | 414, 1510, 1637 |
| Bme1390I | CCNGG | 2 cut(s) | 869, 1098 |
| Bme18I | GGWCC | 2 cut(s) | 731, 865 |
| BmgT120I | GGNCC | 2 cut(s) | 731, 865 |
| BmiI | GGNNCC | 4 cut(s) | 1071, 1102, 1542, 1588 |
| BmrFI | CCNGG | 2 cut(s) | 869, 1098 |
| BmrI | ACTGGG | 1 cut(s) | 1206 |
| BmsI | GCATC | 8 cut(s) | 424, 670, 946, 1083, 1216, 1269, 1560, 1608 |
| BmuI | ACTGGG | 1 cut(s) | 1206 |
| BpiI | GAAGAC | 2 cut(s) | 273, 1040 |
| BpmI | CTGGAG | 1 cut(s) | 244 |
| Bpu10I | CCTNAGC | 1 cut(s) | 339 |
| Bpu14I | TTCGAA | 1 cut(s) | 574 |
| Bsa29I | ATCGAT | 2 cut(s) | 885, 1263 |
| BsaHI | GRCGYC | 1 cut(s) | 541 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1333, 1453 |
| Bse1I | ACTGG | 6 cut(s) | 91, 279, 511, 1212, 1597, 1736 |
| Bse3DI | GCAATG | 1 cut(s) | 1367 |
| BseBI | CCWGG | 2 cut(s) | 869, 1098 |
| BseCI | ATCGAT | 2 cut(s) | 885, 1263 |
| BseGI | GGATG | 5 cut(s) | 499, 685, 800, 1207, 1385 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1333, 1453 |
| BseMI | GCAATG | 1 cut(s) | 1367 |
| BseMII | CTCAG | 2 cut(s) | 291, 330 |
| BseNI | ACTGG | 6 cut(s) | 91, 279, 511, 1212, 1597, 1736 |
| BseRI | GAGGAG | 2 cut(s) | 601, 1550 |
| BseSI | GKGCMC | 1 cut(s) | 1195 |
| BseXI | GCAGC | 3 cut(s) | 424, 1495, 1647 |
| BseYI | CCCAGC | 1 cut(s) | 1511 |
| BshFI | GGCC | 1 cut(s) | 1434 |
| BshNI | GGYRCC | 3 cut(s) | 1069, 1100, 1540 |
| BshVI | ATCGAT | 2 cut(s) | 885, 1263 |
| BsiHKAI | GWGCWC | 2 cut(s) | 260, 1195 |
| BslFI | GGGAC | 3 cut(s) | 488, 1113, 1200 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1333, 1453 |
| BsmAI | GTCTC | 2 cut(s) | 642, 1404 |
| BsmBI | CGTCTC | 1 cut(s) | 1404 |
| BsmFI | GGGAC | 3 cut(s) | 488, 1113, 1200 |
| BsmI | GAATGC | 1 cut(s) | 1120 |
| BsnI | GGCC | 1 cut(s) | 1434 |
| Bsp119I | TTCGAA | 1 cut(s) | 574 |
| Bsp1286I | GDGCHC | 2 cut(s) | 260, 1195 |
| Bsp1407I | TGTACA | 2 cut(s) | 1135, 1705 |
| Bsp143I | GATC | 6 cut(s) | 766, 874, 882, 1264, 1456, 1465 |
| BspACI | CCGC | 2 cut(s) | 1175, 1440 |
| BspANI | GGCC | 1 cut(s) | 1434 |
| BspCNI | CTCAG | 2 cut(s) | 292, 331 |
| BspDI | ATCGAT | 2 cut(s) | 885, 1263 |
| BspLI | GGNNCC | 4 cut(s) | 1071, 1102, 1542, 1588 |
| BspMI | ACCTGC | 1 cut(s) | 1204 |
| BspPI | GGATC | 3 cut(s) | 761, 1464, 1473 |
| BspT104I | TTCGAA | 1 cut(s) | 574 |
| BspT107I | GGYRCC | 3 cut(s) | 1069, 1100, 1540 |
| BsrBI | CCGCTC | 1 cut(s) | 1440 |
| BsrDI | GCAATG | 1 cut(s) | 1367 |
| BsrGI | TGTACA | 2 cut(s) | 1135, 1705 |
| BsrI | ACTGG | 6 cut(s) | 91, 279, 511, 1212, 1597, 1736 |
| BssMI | GATC | 6 cut(s) | 766, 874, 882, 1264, 1456, 1465 |
| BssNI | GRCGYC | 1 cut(s) | 541 |
| BssSI | CACGAG | 1 cut(s) | 1685 |
| Bst2BI | CACGAG | 1 cut(s) | 1685 |
| Bst2UI | CCWGG | 2 cut(s) | 869, 1098 |
| Bst4CI | ACNGT | 4 cut(s) | 200, 469, 479, 1183 |
| Bst6I | CTCTTC | 3 cut(s) | 591, 624, 1014 |
| BstACI | GRCGYC | 1 cut(s) | 541 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1369 |
| BstAUI | TGTACA | 2 cut(s) | 1135, 1705 |
| BstBI | TTCGAA | 1 cut(s) | 574 |
| BstC8I | GCNNGC | 1 cut(s) | 1633 |
| BstDEI | CTNAG | 3 cut(s) | 300, 339, 1294 |
| BstEII | GGTNACC | 2 cut(s) | 997, 1442 |
| BstF5I | GGATG | 5 cut(s) | 499, 685, 800, 1207, 1385 |
| BstKTI | GATC | 6 cut(s) | 769, 877, 885, 1267, 1459, 1468 |
| BstMAI | GTCTC | 2 cut(s) | 642, 1404 |
| BstMBI | GATC | 6 cut(s) | 766, 874, 882, 1264, 1456, 1465 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 516, 956, 1013, 1369 |
| BstNI | CCWGG | 2 cut(s) | 869, 1098 |
| BstNSI | RCATGY | 3 cut(s) | 63, 560, 1142 |
| BstPI | GGTNACC | 2 cut(s) | 997, 1442 |
| BstSCI | CCNGG | 2 cut(s) | 867, 1096 |
| BstSLI | GKGCMC | 1 cut(s) | 1195 |
| BstV1I | GCAGC | 3 cut(s) | 424, 1495, 1647 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 1040 |
| BstX2I | RGATCY | 4 cut(s) | 766, 874, 1456, 1465 |
| BstYI | RGATCY | 4 cut(s) | 766, 874, 1456, 1465 |
| Bsu15I | ATCGAT | 2 cut(s) | 885, 1263 |
| BsuRI | GGCC | 1 cut(s) | 1434 |
| BsuTUI | ATCGAT | 2 cut(s) | 885, 1263 |
| BtsCI | GGATG | 5 cut(s) | 499, 685, 800, 1207, 1385 |
| BtsI | GCAGTG | 2 cut(s) | 723, 1002 |
| BtsIMutI | CAGTG | 4 cut(s) | 723, 1002, 1179, 1743 |
| BveI | ACCTGC | 1 cut(s) | 1204 |
| Cac8I | GCNNGC | 1 cut(s) | 1633 |
| CaiI | CAGNNNCTG | 1 cut(s) | 868 |
| Cfr13I | GGNCC | 2 cut(s) | 731, 865 |
| ClaI | ATCGAT | 2 cut(s) | 885, 1263 |
| CseI | GACGC | 1 cut(s) | 530 |
| Csp6I | GTAC | 4 cut(s) | 756, 1136, 1541, 1706 |
| CviQI | GTAC | 4 cut(s) | 756, 1136, 1541, 1706 |
| DdeI | CTNAG | 3 cut(s) | 300, 339, 1294 |
| DpnI | GATC | 6 cut(s) | 768, 876, 884, 1266, 1458, 1467 |
| DpnII | GATC | 6 cut(s) | 766, 874, 882, 1264, 1456, 1465 |
| EaeI | YGGCCR | 1 cut(s) | 1432 |
| Eam1104I | CTCTTC | 3 cut(s) | 591, 624, 1014 |
| EarI | CTCTTC | 3 cut(s) | 591, 624, 1014 |
| Ecl136II | GAGCTC | 1 cut(s) | 258 |
| Eco24I | GRGCYC | 1 cut(s) | 260 |
| Eco47I | GGWCC | 2 cut(s) | 731, 865 |
| Eco53kI | GAGCTC | 1 cut(s) | 258 |
| Eco57I | CTGAAG | 2 cut(s) | 1038, 1514 |
| Eco91I | GGTNACC | 2 cut(s) | 997, 1442 |
| EcoICRI | GAGCTC | 1 cut(s) | 258 |
| EcoO109I | RGGNCCY | 1 cut(s) | 865 |
| EcoO65I | GGTNACC | 2 cut(s) | 997, 1442 |
| EcoRI | GAATTC | 1 cut(s) | 985 |
| EcoRII | CCWGG | 2 cut(s) | 867, 1096 |
| EcoT38I | GRGCYC | 1 cut(s) | 260 |
| Esp3I | CGTCTC | 1 cut(s) | 1404 |
| FaqI | GGGAC | 3 cut(s) | 488, 1113, 1200 |
| Fnu4HI | GCNGC | 3 cut(s) | 413, 1509, 1636 |
| FokI | GGATG | 5 cut(s) | 506, 692, 787, 1194, 1372 |
| FriOI | GRGCYC | 1 cut(s) | 260 |
| Fsp4HI | GCNGC | 3 cut(s) | 413, 1509, 1636 |
| FspBI | CTAG | 3 cut(s) | 830, 1460, 1532 |
| GluI | GCNGC | 3 cut(s) | 413, 1509, 1636 |
| GsaI | CCCAGC | 1 cut(s) | 1515 |
| GsuI | CTGGAG | 1 cut(s) | 244 |
| HaeIII | GGCC | 1 cut(s) | 1434 |
| HgaI | GACGC | 1 cut(s) | 530 |
| Hin1I | GRCGYC | 1 cut(s) | 541 |
| HinfI | GANTC | 8 cut(s) | 131, 401, 564, 599, 635, 845, 1520, 1715 |
| HphI | GGTGA | 6 cut(s) | 182, 191, 422, 594, 994, 1454 |
| Hpy166II | GTNNAC | 1 cut(s) | 1193 |
| Hpy188I | TCNGA | 9 cut(s) | 322, 348, 790, 1042, 1081, 1123, 1494, 1567, 1759 |
| Hpy188III | TCNNGA | 4 cut(s) | 191, 533, 830, 1460 |
| Hpy8I | GTNNAC | 1 cut(s) | 1193 |
| Hpy99I | CGWCG | 1 cut(s) | 546 |
| HpyAV | CCTTC | 6 cut(s) | 145, 237, 391, 644, 825, 1399 |
| HpyCH4III | ACNGT | 4 cut(s) | 200, 469, 479, 1183 |
| HpyCH4IV | ACGT | 1 cut(s) | 1762 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 516, 956, 1013, 1369 |
| HpyF3I | CTNAG | 3 cut(s) | 300, 339, 1294 |
| HpySE526I | ACGT | 1 cut(s) | 1762 |
| Hsp92I | GRCGYC | 1 cut(s) | 541 |
| KpnI | GGTACC | 1 cut(s) | 1544 |
| Kzo9I | GATC | 6 cut(s) | 766, 874, 882, 1264, 1456, 1465 |
| LmnI | GCTCC | 2 cut(s) | 263, 613 |
| Lsp1109I | GCAGC | 3 cut(s) | 424, 1495, 1647 |
| LweI | GCATC | 8 cut(s) | 424, 670, 946, 1083, 1216, 1269, 1560, 1608 |
| MaeI | CTAG | 3 cut(s) | 830, 1460, 1532 |
| MaeII | ACGT | 1 cut(s) | 1762 |
| MaeIII | GTNAC | 6 cut(s) | 62, 368, 600, 997, 1340, 1442 |
| MalI | GATC | 6 cut(s) | 768, 876, 884, 1266, 1458, 1467 |
| MbiI | CCGCTC | 1 cut(s) | 1440 |
| MboI | GATC | 6 cut(s) | 766, 874, 882, 1264, 1456, 1465 |
| MfeI | CAATTG | 1 cut(s) | 1251 |
| MflI | RGATCY | 4 cut(s) | 766, 874, 1456, 1465 |
| MhlI | GDGCHC | 2 cut(s) | 260, 1195 |
| MlsI | TGGCCA | 1 cut(s) | 1434 |
| MluNI | TGGCCA | 1 cut(s) | 1434 |
| MlyI | GAGTC | 3 cut(s) | 140, 608, 644 |
| MmeI | TCCRAC | 2 cut(s) | 635, 665 |
| Mox20I | TGGCCA | 1 cut(s) | 1434 |
| MscI | TGGCCA | 1 cut(s) | 1434 |
| MseI | TTAA | 4 cut(s) | 147, 489, 746, 894 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1137, 1349 |
| Msp20I | TGGCCA | 1 cut(s) | 1434 |
| MspR9I | CCNGG | 2 cut(s) | 869, 1098 |
| MunI | CAATTG | 1 cut(s) | 1251 |
| Mva1269I | GAATGC | 1 cut(s) | 1120 |
| MvaI | CCWGG | 2 cut(s) | 869, 1098 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 516, 956, 1013, 1369 |
| NdeII | GATC | 6 cut(s) | 766, 874, 882, 1264, 1456, 1465 |
| NlaIV | GGNNCC | 4 cut(s) | 1071, 1102, 1542, 1588 |
| NmeAIII | GCCGAG | 1 cut(s) | 418 |
| NmuCI | GTSAC | 5 cut(s) | 62, 368, 600, 1340, 1442 |
| NspI | RCATGY | 3 cut(s) | 63, 560, 1142 |
| NspV | TTCGAA | 1 cut(s) | 574 |
| PaqCI | CACCTGC | 1 cut(s) | 1204 |
| PctI | GAATGC | 1 cut(s) | 1120 |
| PfeI | GAWTC | 5 cut(s) | 401, 564, 845, 1520, 1715 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1453 |
| PkrI | GCNGC | 3 cut(s) | 414, 1510, 1637 |
| PleI | GAGTC | 3 cut(s) | 139, 607, 643 |
| PpsI | GAGTC | 3 cut(s) | 139, 607, 643 |
| PpuMI | RGGWCCY | 1 cut(s) | 865 |
| PshBI | ATTAAT | 1 cut(s) | 894 |
| PsiI | TTATAA | 1 cut(s) | 32 |
| Psp124BI | GAGCTC | 1 cut(s) | 260 |
| Psp5II | RGGWCCY | 1 cut(s) | 865 |
| Psp6I | CCWGG | 2 cut(s) | 867, 1096 |
| PspEI | GGTNACC | 2 cut(s) | 997, 1442 |
| PspFI | CCCAGC | 1 cut(s) | 1511 |
| PspGI | CCWGG | 2 cut(s) | 867, 1096 |
| PspN4I | GGNNCC | 4 cut(s) | 1071, 1102, 1542, 1588 |
| PspPI | GGNCC | 2 cut(s) | 731, 865 |
| PspPPI | RGGWCCY | 1 cut(s) | 865 |
| PstNI | CAGNNNCTG | 1 cut(s) | 868 |
| PsuI | RGATCY | 4 cut(s) | 766, 874, 1456, 1465 |
| RsaI | GTAC | 4 cut(s) | 757, 1137, 1542, 1707 |
| RsaNI | GTAC | 4 cut(s) | 756, 1136, 1541, 1706 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1137, 1349 |
| SacI | GAGCTC | 1 cut(s) | 260 |
| SaqAI | TTAA | 4 cut(s) | 147, 489, 746, 894 |
| SatI | GCNGC | 3 cut(s) | 413, 1509, 1636 |
| Sau3AI | GATC | 6 cut(s) | 766, 874, 882, 1264, 1456, 1465 |
| Sau96I | GGNCC | 2 cut(s) | 731, 865 |
| SchI | GAGTC | 3 cut(s) | 140, 608, 644 |
| ScrFI | CCNGG | 2 cut(s) | 869, 1098 |
| SduI | GDGCHC | 2 cut(s) | 260, 1195 |
| SfaNI | GCATC | 8 cut(s) | 424, 670, 946, 1083, 1216, 1269, 1560, 1608 |
| SfuI | TTCGAA | 1 cut(s) | 574 |
| SinI | GGWCC | 2 cut(s) | 731, 865 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1137, 1349 |
| SsiI | CCGC | 2 cut(s) | 1175, 1440 |
| SspI | AATATT | 1 cut(s) | 781 |
| SspMI | CTAG | 3 cut(s) | 830, 1460, 1532 |
| SstI | GAGCTC | 1 cut(s) | 260 |
| StyD4I | CCNGG | 2 cut(s) | 867, 1096 |
| TaaI | ACNGT | 4 cut(s) | 200, 469, 479, 1183 |
| TaiI | ACGT | 1 cut(s) | 1765 |
| TaqI | TCGA | 5 cut(s) | 574, 714, 885, 1227, 1263 |
| TatI | WGTACW | 2 cut(s) | 1135, 1705 |
| TfiI | GAWTC | 5 cut(s) | 401, 564, 845, 1520, 1715 |
| Tru1I | TTAA | 4 cut(s) | 147, 489, 746, 894 |
| Tru9I | TTAA | 4 cut(s) | 147, 489, 746, 894 |
| TscAI | CASTG | 4 cut(s) | 730, 1009, 1186, 1743 |
| TseFI | GTSAC | 5 cut(s) | 62, 368, 600, 1340, 1442 |
| TseI | GCWGC | 3 cut(s) | 412, 1508, 1635 |
| Tsp45I | GTSAC | 5 cut(s) | 62, 368, 600, 1340, 1442 |
| TspDTI | ATGAA | 6 cut(s) | 393, 851, 912, 1098, 1335, 1494 |
| TspRI | CASTG | 4 cut(s) | 730, 1009, 1186, 1743 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1453 |
| VneI | GTGCAC | 1 cut(s) | 1191 |
| VpaK11BI | GGWCC | 2 cut(s) | 731, 865 |
| VspI | ATTAAT | 1 cut(s) | 894 |
| XapI | RAATTY | 2 cut(s) | 985, 1752 |
| XbaI | TCTAGA | 2 cut(s) | 829, 1459 |
| XceI | RCATGY | 3 cut(s) | 63, 560, 1142 |
| XspI | CTAG | 3 cut(s) | 830, 1460, 1532 |