Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006195

Physical Location & Seq

Genomic Coordinates Forward (+)

31468969 .. 31471142

Gene Structure 2174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24362

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGGAAAATCTTGCTGAGGTTCAGATACATGACCTTTTTGAATGTCACAAATGCATTATGACTTTTGCTGAGAAGGATTCATATTTGCAGCATCTATTGTCCTTTCACCAGAGGACTACAAGGAGGTATAGACTTGGTTCGACAGTTGGGGACGGTGTGATAATTAAGGATGGGAAATATGAGTGCCAGTTCTGCCATAAGGTATTTCTGGAAAGGCGTCGCTATAATGGGCATGTAGGAATCCATGTTCGAAATTATGTGAGGAGGGTGGAAGAGTCGCCAGCTCCAACAACTCTTCAAAAGAAAATAGAGTCTCCAACAAGGGAAGGTTTGCCATCAAGGAACTCTAAAATGGATGCTTTGATTGAAATTGCTCAAAACTCTATCCTCGAAACCTCCACTGCTGGACCAAATGAGGAATTAAAAGGTGGTACTACACCAGATCCATACATCAATATTAGTTCAGAAACTCCCGCTTCCAATTCTCATCTAGAAATGAACATAGAATCTAAACTGACTGAACAGGACCTGGAAGATCTTATGATTGATGGAATTAATGAAGATGAGCAAGAGAGTGAGCATACAATAACTGATGGAAGTATGGAGGAAGCTGTCGATGCTATGGAAGTTGTAGATGATAAGGTGAATTCTTGTTTGGTTACAACTGCCTCATCTGCTGAAGAGAAAAATGGGAAGACATCTGAAAGGTCTGTGGAGATAAATGGTCTGGCACCCACCTCCGATGAATTGGAGATGTCTGGCACCAAGCAGGAGAATGCTTCTGAATGTCCCCATGTACATGCTTCTTCAAATAATCAATCTATTAGTGATGTTGTGGACAATGTAAAATGTGCAACTGCATTAGAGCATCCCAGTCCCGTTGAAGTCGATAAACAAAAGCATACTGAACCAATTGATAGCATCGATCAACCTCGACCAGCTAATGATAGTTCCTTGGAGTTCCATGCTTCTAACAGAAATGAACTTCAAAGTGGGGTTTGTGACACCTCAATGTCATTGGTGCAACCATTGCTCTGTATTCCCACATCCAATGCAATTTTGCAGAAGGGAGACGAACATCTTATTGGTGTTGGCCAGAGCGGTGACCATGTAATGGATCTAGAGGATCTGCAACAACATGAAATAGAACATCTGAAGCATGGTTCTGCTGCTGGGCAAGAATCTTTTATACTAGAGGAGGTACCGATTGATATGACAAATAGTTCAGAGATGCAAAAACCAGTTGGTTCCTCTGTCCAGTTTGAACCAGAAGAAGTGATGCTAAACATGGCTGGCAGCAATCAGCTTACAACTGCTTGTATCTGGTGTGGAGTAGATTTCAAACACGAGGCTGTTGATTATGGTGTACAACCCGATTCTGTTGGCTTTATGTGTCCAGTGTGCAAGGCAAAAATTTCTGAACGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

476

Amino Acids

52.63

Weight (kDa)

4.7

Isoelectric Point (pI)

59.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22310 AT1G22310
fragaria_vesca	FvH4_2g11920 FvH4_2g11920
malus_domestica	MD05G1043400.v1.1 MD10G1050700.v1.1
prunus_persica	Prupe.8G062800_v2.0.a1 Prupe.8G062800_v2.0.a1
pyrus_communis	pycom05g03580 pycom05g03610 pycom10g03570
rosa_chinensis	RchiOBHm_Chr6g0271611 RchiOBHm_Chr6g0271621 RchiOBHm_Chr6g0271751 RchiOBHm_Chr6g0271781
rosa_laevigata	RLG00000013717 RLG00000013732
rosa_multiflora	Rmu_co8510743.1_g000001 Rmu_sc0002396.1_g000008
rosa_roxburghii	Rroxscaffold_173G00435060 Rroxscaffold_7G00196650
rosa_rugosa	Rorug06G0062300
rosa_samantha	Rh6AG181100 Rh6BG186200 Rh6CG180700 Rh6CG181600
rosa_wichuraiana	Rw6G015530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1201
AccB1I	GGYRCC	3 cut(s)	730, 761, 1201
AccB7I	CCANNNNNTGG	1 cut(s)	1114
AccBSI	CCGCTC	1 cut(s)	1101
AciI	CCGC	2 cut(s)	474, 1101
AclWI	GGATC	3 cut(s)	437, 1125, 1134
AcoI	YGGCCR	1 cut(s)	1093
AcsI	RAATTY	2 cut(s)	646, 1413
AcuI	CTGAAG	2 cut(s)	699, 1175
AcyI	GRCGYC	1 cut(s)	217
AfaI	GTAC	4 cut(s)	433, 798, 1203, 1368
AfiI	CCNNNNNNNGG	1 cut(s)	1114
AgsI	TTSAA	8 cut(s)	41, 299, 368, 810, 884, 989, 1265, 1342
AjnI	CCWGG	1 cut(s)	528
AjuI	GAANNNNNNNTTGG	4 cut(s)	638, 670, 1068, 1100
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
AluBI	AGCT	4 cut(s)	284, 611, 941, 1306
AluI	AGCT	4 cut(s)	284, 611, 941, 1306
Alw26I	GTCTC	2 cut(s)	318, 1065
AlwI	GGATC	3 cut(s)	437, 1125, 1134
AlwNI	CAGNNNCTG	1 cut(s)	529
AoxI	GGCC	1 cut(s)	1093
ApeKI	GCWGC	3 cut(s)	88, 1169, 1296
ApoI	RAATTY	2 cut(s)	646, 1413
AseI	ATTAAT	1 cut(s)	555
Asp718I	GGTACC	1 cut(s)	1201
AspS9I	GGNCC	2 cut(s)	407, 526
AsuHPI	GGTGA	3 cut(s)	98, 655, 1115
AsuII	TTCGAA	1 cut(s)	250
AvaII	GGWCC	2 cut(s)	407, 526
BalI	TGGCCA	1 cut(s)	1095
BanI	GGYRCC	3 cut(s)	730, 761, 1201
BauI	CACGAG	1 cut(s)	1346
BbsI	GAAGAC	1 cut(s)	701
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	3 cut(s)	100, 1156, 1308
BccI	CCATC	4 cut(s)	164, 343, 542, 587
BciT130I	CCWGG	1 cut(s)	530
BcoDI	GTCTC	2 cut(s)	318, 1065
BfaI	CTAG	3 cut(s)	491, 1121, 1193
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	3 cut(s)	89, 1170, 1297
BlsI	GCNGC	3 cut(s)	90, 1171, 1298
Bme1390I	CCNGG	1 cut(s)	530
Bme18I	GGWCC	2 cut(s)	407, 526
BmgT120I	GGNCC	2 cut(s)	407, 526
BmiI	GGNNCC	4 cut(s)	732, 763, 1203, 1249
BmrFI	CCNGG	1 cut(s)	530
BmrI	ACTGGG	1 cut(s)	867
BmsI	GCATC	7 cut(s)	100, 346, 607, 877, 930, 1221, 1269
BmuI	ACTGGG	1 cut(s)	867
BpiI	GAAGAC	1 cut(s)	701
Bpu10I	CCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	250
Bsa29I	ATCGAT	1 cut(s)	924
BsaHI	GRCGYC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	954
Bsc4I	CCNNNNNNNGG	1 cut(s)	1114
Bse1I	ACTGG	5 cut(s)	187, 873, 1241, 1258, 1397
Bse3DI	GCAATG	1 cut(s)	1028
BseBI	CCWGG	1 cut(s)	530
BseCI	ATCGAT	1 cut(s)	924
BseDI	CCNNGG	1 cut(s)	954
BseGI	GGATG	4 cut(s)	175, 361, 868, 1046
BseLI	CCNNNNNNNGG	1 cut(s)	1114
BseMI	GCAATG	1 cut(s)	1028
BseMII	CTCAG	2 cut(s)	6, 60
BseNI	ACTGG	5 cut(s)	187, 873, 1241, 1258, 1397
BseRI	GAGGAG	2 cut(s)	277, 1211
BseXI	GCAGC	3 cut(s)	100, 1156, 1308
BseYI	CCCAGC	1 cut(s)	1172
BshFI	GGCC	1 cut(s)	1095
BshNI	GGYRCC	3 cut(s)	730, 761, 1201
BshVI	ATCGAT	1 cut(s)	924
BslFI	GGGAC	3 cut(s)	164, 774, 861
BslI	CCNNNNNNNGG	1 cut(s)	1114
BsmAI	GTCTC	2 cut(s)	318, 1065
BsmBI	CGTCTC	1 cut(s)	1065
BsmFI	GGGAC	3 cut(s)	164, 774, 861
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	1 cut(s)	1095
Bsp119I	TTCGAA	1 cut(s)	250
Bsp1407I	TGTACA	2 cut(s)	796, 1366
Bsp143I	GATC	5 cut(s)	442, 535, 925, 1117, 1126
BspACI	CCGC	2 cut(s)	474, 1101
BspANI	GGCC	1 cut(s)	1095
BspCNI	CTCAG	2 cut(s)	7, 61
BspDI	ATCGAT	1 cut(s)	924
BspLI	GGNNCC	4 cut(s)	732, 763, 1203, 1249
BspPI	GGATC	3 cut(s)	437, 1125, 1134
BspT104I	TTCGAA	1 cut(s)	250
BspT107I	GGYRCC	3 cut(s)	730, 761, 1201
BsrBI	CCGCTC	1 cut(s)	1101
BsrDI	GCAATG	1 cut(s)	1028
BsrGI	TGTACA	2 cut(s)	796, 1366
BsrI	ACTGG	5 cut(s)	187, 873, 1241, 1258, 1397
BssECI	CCNNGG	1 cut(s)	954
BssMI	GATC	5 cut(s)	442, 535, 925, 1117, 1126
BssNI	GRCGYC	1 cut(s)	217
BssSI	CACGAG	1 cut(s)	1346
BssT1I	CCWWGG	1 cut(s)	954
Bst2BI	CACGAG	1 cut(s)	1346
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	2 cut(s)	145, 155
Bst6I	CTCTTC	3 cut(s)	267, 300, 675
BstACI	GRCGYC	1 cut(s)	217
BstAPI	GCANNNNNTGC	1 cut(s)	1030
BstAUI	TGTACA	2 cut(s)	796, 1366
BstBI	TTCGAA	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	282, 1294
BstDEI	CTNAG	2 cut(s)	15, 69
BstEII	GGTNACC	1 cut(s)	1103
BstF5I	GGATG	4 cut(s)	175, 361, 868, 1046
BstKTI	GATC	5 cut(s)	445, 538, 928, 1120, 1129
BstMAI	GTCTC	2 cut(s)	318, 1065
BstMBI	GATC	5 cut(s)	442, 535, 925, 1117, 1126
BstMWI	GCNNNNNNNGC	4 cut(s)	192, 617, 674, 1030
BstNI	CCWGG	1 cut(s)	530
BstNSI	RCATGY	2 cut(s)	236, 803
BstPI	GGTNACC	1 cut(s)	1103
BstSCI	CCNGG	1 cut(s)	528
BstV1I	GCAGC	3 cut(s)	100, 1156, 1308
BstV2I	GAAGAC	1 cut(s)	701
BstX2I	RGATCY	4 cut(s)	442, 535, 1117, 1126
BstYI	RGATCY	4 cut(s)	442, 535, 1117, 1126
Bsu15I	ATCGAT	1 cut(s)	924
BsuRI	GGCC	1 cut(s)	1095
BsuTUI	ATCGAT	1 cut(s)	924
BtsCI	GGATG	4 cut(s)	175, 361, 868, 1046
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	399, 1404
Cac8I	GCNNGC	2 cut(s)	282, 1294
CaiI	CAGNNNCTG	1 cut(s)	529
Cfr13I	GGNCC	2 cut(s)	407, 526
ClaI	ATCGAT	1 cut(s)	924
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	4 cut(s)	432, 797, 1202, 1367
CviJI	RGCY	8 cut(s)	284, 611, 941, 1095, 1292, 1306, 1352, 1386
CviKI_1	RGCY	8 cut(s)	284, 611, 941, 1095, 1292, 1306, 1352, 1386
CviQI	GTAC	4 cut(s)	432, 797, 1202, 1367
DdeI	CTNAG	2 cut(s)	15, 69
DpnI	GATC	5 cut(s)	444, 537, 927, 1119, 1128
DpnII	GATC	5 cut(s)	442, 535, 925, 1117, 1126
EaeI	YGGCCR	1 cut(s)	1093
Eam1104I	CTCTTC	3 cut(s)	267, 300, 675
EarI	CTCTTC	3 cut(s)	267, 300, 675
Eco130I	CCWWGG	1 cut(s)	954
Eco47I	GGWCC	2 cut(s)	407, 526
Eco57I	CTGAAG	2 cut(s)	699, 1175
Eco91I	GGTNACC	1 cut(s)	1103
EcoO109I	RGGNCCY	1 cut(s)	526
EcoO65I	GGTNACC	1 cut(s)	1103
EcoRI	GAATTC	1 cut(s)	646
EcoRII	CCWGG	1 cut(s)	528
EcoT14I	CCWWGG	1 cut(s)	954
EcoT22I	ATGCAT	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	954
Esp3I	CGTCTC	1 cut(s)	1065
FaqI	GGGAC	3 cut(s)	164, 774, 861
FauI	CCCGC	1 cut(s)	481
Fnu4HI	GCNGC	3 cut(s)	89, 1170, 1297
FokI	GGATG	4 cut(s)	182, 368, 855, 1033
Fsp4HI	GCNGC	3 cut(s)	89, 1170, 1297
FspBI	CTAG	3 cut(s)	491, 1121, 1193
GluI	GCNGC	3 cut(s)	89, 1170, 1297
GsaI	CCCAGC	1 cut(s)	1176
HaeIII	GGCC	1 cut(s)	1095
HgaI	GACGC	1 cut(s)	206
Hin1I	GRCGYC	1 cut(s)	217
HinfI	GANTC	7 cut(s)	77, 240, 275, 311, 506, 1181, 1376
HphI	GGTGA	3 cut(s)	98, 655, 1115
Hpy166II	GTNNAC	2 cut(s)	838, 1367
Hpy188I	TCNGA	8 cut(s)	24, 466, 703, 742, 784, 1155, 1228, 1420
Hpy188III	TCNNGA	3 cut(s)	209, 491, 1121
Hpy8I	GTNNAC	2 cut(s)	838, 1367
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	3 cut(s)	67, 320, 1060
HpyCH4III	ACNGT	2 cut(s)	145, 155
HpyCH4IV	ACGT	1 cut(s)	1423
HpyF10VI	GCNNNNNNNGC	4 cut(s)	192, 617, 674, 1030
HpyF3I	CTNAG	2 cut(s)	15, 69
HpySE526I	ACGT	1 cut(s)	1423
Hsp92I	GRCGYC	1 cut(s)	217
KpnI	GGTACC	1 cut(s)	1205
Kzo9I	GATC	5 cut(s)	442, 535, 925, 1117, 1126
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	3 cut(s)	100, 1156, 1308
LweI	GCATC	7 cut(s)	100, 346, 607, 877, 930, 1221, 1269
MaeI	CTAG	3 cut(s)	491, 1121, 1193
MaeII	ACGT	1 cut(s)	1423
MaeIII	GTNAC	4 cut(s)	44, 658, 1001, 1103
MalI	GATC	5 cut(s)	444, 537, 927, 1119, 1128
MbiI	CCGCTC	1 cut(s)	1101
MboI	GATC	5 cut(s)	442, 535, 925, 1117, 1126
MboII	GAAGA	8 cut(s)	284, 287, 545, 572, 692, 706, 798, 1283
MfeI	CAATTG	1 cut(s)	912
MflI	RGATCY	4 cut(s)	442, 535, 1117, 1126
MlsI	TGGCCA	1 cut(s)	1095
MluNI	TGGCCA	1 cut(s)	1095
MlyI	GAGTC	2 cut(s)	284, 320
MmeI	TCCRAC	2 cut(s)	311, 341
Mox20I	TGGCCA	1 cut(s)	1095
Mph1103I	ATGCAT	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	1095
MseI	TTAA	3 cut(s)	165, 422, 555
MslI	CAYNNNNRTG	2 cut(s)	798, 1010
Msp20I	TGGCCA	1 cut(s)	1095
MspR9I	CCNGG	1 cut(s)	530
MunI	CAATTG	1 cut(s)	912
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	4 cut(s)	192, 617, 674, 1030
NdeII	GATC	5 cut(s)	442, 535, 925, 1117, 1126
NlaIV	GGNNCC	4 cut(s)	732, 763, 1203, 1249
NmuCI	GTSAC	3 cut(s)	44, 1001, 1103
NsiI	ATGCAT	1 cut(s)	56
NspI	RCATGY	2 cut(s)	236, 803
NspV	TTCGAA	1 cut(s)	250
PctI	GAATGC	1 cut(s)	781
PfeI	GAWTC	5 cut(s)	77, 240, 506, 1181, 1376
PflMI	CCANNNNNTGG	1 cut(s)	1114
PkrI	GCNGC	3 cut(s)	90, 1171, 1298
PleI	GAGTC	2 cut(s)	283, 319
PpsI	GAGTC	2 cut(s)	283, 319
PpuMI	RGGWCCY	1 cut(s)	526
PshBI	ATTAAT	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	528
PspEI	GGTNACC	1 cut(s)	1103
PspFI	CCCAGC	1 cut(s)	1172
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	4 cut(s)	732, 763, 1203, 1249
PspPI	GGNCC	2 cut(s)	407, 526
PspPPI	RGGWCCY	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	529
PsuI	RGATCY	4 cut(s)	442, 535, 1117, 1126
RsaI	GTAC	4 cut(s)	433, 798, 1203, 1368
RsaNI	GTAC	4 cut(s)	432, 797, 1202, 1367
RseI	CAYNNNNRTG	2 cut(s)	798, 1010
SaqAI	TTAA	3 cut(s)	165, 422, 555
SatI	GCNGC	3 cut(s)	89, 1170, 1297
Sau3AI	GATC	5 cut(s)	442, 535, 925, 1117, 1126
Sau96I	GGNCC	2 cut(s)	407, 526
SchI	GAGTC	2 cut(s)	284, 320
ScrFI	CCNGG	1 cut(s)	530
SfaNI	GCATC	7 cut(s)	100, 346, 607, 877, 930, 1221, 1269
SfuI	TTCGAA	1 cut(s)	250
SinI	GGWCC	2 cut(s)	407, 526
SmiMI	CAYNNNNRTG	2 cut(s)	798, 1010
SsiI	CCGC	2 cut(s)	474, 1101
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	3 cut(s)	491, 1121, 1193
StyD4I	CCNGG	1 cut(s)	528
StyI	CCWWGG	1 cut(s)	954
TaaI	ACNGT	2 cut(s)	145, 155
TaiI	ACGT	1 cut(s)	1426
TaqI	TCGA	7 cut(s)	140, 250, 390, 615, 888, 924, 934
TatI	WGTACW	2 cut(s)	796, 1366
TfiI	GAWTC	5 cut(s)	77, 240, 506, 1181, 1376
Tru1I	TTAA	3 cut(s)	165, 422, 555
Tru9I	TTAA	3 cut(s)	165, 422, 555
TscAI	CASTG	2 cut(s)	406, 1404
TseFI	GTSAC	3 cut(s)	44, 1001, 1103
TseI	GCWGC	3 cut(s)	88, 1169, 1296
Tsp45I	GTSAC	3 cut(s)	44, 1001, 1103
TspDTI	ATGAA	6 cut(s)	69, 512, 573, 759, 996, 1155
TspRI	CASTG	2 cut(s)	406, 1404
Van91I	CCANNNNNTGG	1 cut(s)	1114
VpaK11BI	GGWCC	2 cut(s)	407, 526
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	2 cut(s)	646, 1413
XbaI	TCTAGA	2 cut(s)	490, 1120
XceI	RCATGY	2 cut(s)	236, 803
XspI	CTAG	3 cut(s)	491, 1121, 1193
Zsp2I	ATGCAT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.