pycom05g03610

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0006195
Physical Location & Seq
Forward (+)
4159751 .. 4160284
534 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g03610.1

Sequence Viewer

Length: 534 bp
ATGAAGACAGCTGAGTTATCAGCTACGGAGAAGAACGGTAAACCATCTGAATGTCCTTGGGAAAAAGATGGCTTGGCATCCACCTCTGACGAGTTGGAGAAGTCTGGTACTAATCAGGATGGAGCTACTCACTGCAAGATAGATGCTTCTTCGGATGACAAATGTATTTGTGATTCAGTTGGGGATGCAATTTTGAATTGCACAAGTGCATCAGAGCAGTCCAATGCTATTGAACACAGCGCTAACAAGAGTAGTGAACAAGCAATTGACTTTGGTAGCAGCATTGATCACGAACCATCTAAATCTAATGATACTTTGATAGAATCTGTATGCCAAGCTTATGAAGGAAATGAACTGCAAATCGGGATTTCTGACTCCTCAGTACCACTGGTGCAATCATTGGTCTGCTTTCCCACATCTACTACAATATTGGATAAGGTACTATCAAGCATTGCTGCCATATTTTGTTTCTTTCTGGTTTCCAGATATACTGATACACCTGAGTCGCGTTCAAAGTGTTTTCTTCAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBD

Protein Analysis

178

Amino Acids

18.95

Weight (kDa)

4.38

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 508
AfaI GTAC 3 cut(s) 109, 384, 441
AfeI AGCGCT 1 cut(s) 241
AgsI TTSAA 4 cut(s) 196, 233, 513, 527
AluBI AGCT 4 cut(s) 11, 23, 125, 338
AluI AGCT 4 cut(s) 11, 23, 125, 338
Aor51HI AGCGCT 1 cut(s) 241
ApeKI GCWGC 2 cut(s) 279, 455
AspLEI GCGC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 291, 442
BccI CCATC 4 cut(s) 52, 62, 113, 304
BclI TGATCA 1 cut(s) 286
BfoI RGCGCY 1 cut(s) 243
BisI GCNGC 2 cut(s) 280, 456
BlsI GCNGC 2 cut(s) 281, 457
BmsI GCATC 4 cut(s) 86, 133, 175, 218
BpiI GAAGAC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 4 cut(s) 77, 124, 160, 190
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 2 cut(s) 393, 492
BseNI ACTGG 1 cut(s) 393
BseRI GAGGAG 1 cut(s) 367
BseXI GCAGC 2 cut(s) 291, 442
Bsh1236I CGCG 1 cut(s) 508
Bsp143I GATC 1 cut(s) 286
BspCNI CTCAG 3 cut(s) 4, 392, 493
BspFNI CGCG 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 450
BsrI ACTGG 1 cut(s) 393
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 38
BstDEI CTNAG 3 cut(s) 12, 379, 501
BstF5I GGATG 4 cut(s) 77, 124, 160, 190
BstFNI CGCG 1 cut(s) 508
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 2 cut(s) 291, 442
BstV2I GAAGAC 1 cut(s) 11
BtsCI GGATG 4 cut(s) 77, 124, 160, 190
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 130, 386
CfoI GCGC 1 cut(s) 242
Csp6I GTAC 3 cut(s) 108, 383, 440
CviJI RGCY 5 cut(s) 11, 23, 72, 125, 338
CviKI_1 RGCY 5 cut(s) 11, 23, 72, 125, 338
CviQI GTAC 3 cut(s) 108, 383, 440
DdeI CTNAG 3 cut(s) 12, 379, 501
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 56
Eco47III AGCGCT 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaiI YATR 4 cut(s) 331, 342, 461, 489
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 2 cut(s) 280, 456
FokI GGATG 4 cut(s) 64, 131, 167, 197
Fsp4HI GCNGC 2 cut(s) 280, 456
GlaI GCGC 1 cut(s) 241
GluI GCNGC 2 cut(s) 280, 456
HaeII RGCGCY 1 cut(s) 243
HhaI GCGC 1 cut(s) 242
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 4 cut(s) 173, 323, 374, 503
Hpy166II GTNNAC 2 cut(s) 41, 257
Hpy188I TCNGA 5 cut(s) 49, 88, 154, 214, 373
Hpy188III TCNNGA 4 cut(s) 116, 290, 364, 483
Hpy8I GTNNAC 2 cut(s) 41, 257
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 6 cut(s) 135, 188, 201, 209, 358, 394
HpyF3I CTNAG 3 cut(s) 12, 379, 501
HspAI GCGC 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 6 cut(s) 90, 101, 374, 461, 496, 513
Lsp1109I GCAGC 2 cut(s) 291, 442
LweI GCATC 4 cut(s) 86, 133, 175, 218
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 4 cut(s) 16, 43, 141, 515
MfeI CAATTG 1 cut(s) 264
MluCI AATT 4 cut(s) 189, 196, 264, 529
MlyI GAGTC 2 cut(s) 368, 512
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 2 cut(s) 94, 388
MseI TTAA 1 cut(s) 532
MslI CAYNNNNRTG 1 cut(s) 49
MspA1I CMGCKG 1 cut(s) 11
MunI CAATTG 1 cut(s) 264
MvnI CGCG 1 cut(s) 508
NdeII GATC 1 cut(s) 286
PfeI GAWTC 2 cut(s) 173, 323
PkrI GCNGC 2 cut(s) 281, 457
PleI GAGTC 2 cut(s) 368, 511
PpsI GAGTC 2 cut(s) 368, 511
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 3 cut(s) 109, 384, 441
RsaNI GTAC 3 cut(s) 108, 383, 440
RseI CAYNNNNRTG 1 cut(s) 49
SaqAI TTAA 1 cut(s) 532
SatI GCNGC 2 cut(s) 280, 456
Sau3AI GATC 1 cut(s) 286
SchI GAGTC 2 cut(s) 368, 512
SetI ASST 7 cut(s) 13, 25, 86, 127, 340, 441, 502
SfaNI GCATC 4 cut(s) 86, 133, 175, 218
SmiMI CAYNNNNRTG 1 cut(s) 49
Sse9I AATT 4 cut(s) 189, 196, 264, 529
SspI AATATT 1 cut(s) 429
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 38
TasI AATT 4 cut(s) 189, 196, 264, 529
TfiI GAWTC 2 cut(s) 173, 323
Tru1I TTAA 1 cut(s) 532
Tru9I TTAA 1 cut(s) 532
TscAI CASTG 2 cut(s) 137, 393
TseI GCWGC 2 cut(s) 279, 455
TspDTI ATGAA 3 cut(s) 17, 357, 366
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 2 cut(s) 137, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.