zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G22310 AT1G22310 |
| fragaria_vesca | FvH4_2g11920 FvH4_2g11920 |
| malus_domestica | MD05G1043400.v1.1 MD10G1050700.v1.1 |
| prunus_persica | Prupe.8G062800_v2.0.a1 Prupe.8G062800_v2.0.a1 |
| pyrus_communis | pycom05g03580 pycom05g03610 pycom10g03570 |
| rosa_chinensis | RchiOBHm_Chr6g0271611 RchiOBHm_Chr6g0271621 RchiOBHm_Chr6g0271751 RchiOBHm_Chr6g0271781 |
| rosa_laevigata | RLG00000013717 RLG00000013732 |
| rosa_multiflora | Rmu_co8510743.1_g000001 Rmu_sc0002396.1_g000008 |
| rosa_roxburghii | Rroxscaffold_173G00435060 Rroxscaffold_7G00196650 |
| rosa_rugosa | Rorug06G0062300 |
| rosa_samantha | Rh6AG181100 Rh6BG186200 Rh6CG180700 Rh6CG181600 |
| rosa_wichuraiana | Rw6G015530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 299, 320 |
| Acc36I | ACCTGC | 1 cut(s) | 1052 |
| Acc65I | GGTACC | 1 cut(s) | 2491 |
| AccB1I | GGYRCC | 1 cut(s) | 2491 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1109 |
| AccI | GTMKAC | 1 cut(s) | 1272 |
| AccII | CGCG | 3 cut(s) | 148, 426, 2516 |
| AclWI | GGATC | 2 cut(s) | 1619, 1883 |
| AcoI | YGGCCR | 3 cut(s) | 149, 412, 550 |
| AcsI | RAATTY | 3 cut(s) | 545, 1201, 1740 |
| AcuI | CTGAAG | 1 cut(s) | 2465 |
| AcyI | GRCGYC | 2 cut(s) | 581, 1486 |
| AfaI | GTAC | 4 cut(s) | 31, 2032, 2307, 2493 |
| AfeI | AGCGCT | 2 cut(s) | 237, 2164 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 147, 548, 617, 618, 1109, 1724, 2578 |
| AflII | CTTAAG | 1 cut(s) | 971 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 102 |
| AjiI | CACGTC | 2 cut(s) | 989, 1198 |
| AjnI | CCWGG | 3 cut(s) | 534, 1549, 1800 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 783, 815, 2268, 2300, 2517, 2549 |
| AleI | CACNNNNGTG | 1 cut(s) | 464 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 515, 547 |
| Alw21I | GWGCWC | 2 cut(s) | 231, 600 |
| Alw26I | GTCTC | 3 cut(s) | 94, 1587, 2386 |
| AlwI | GGATC | 2 cut(s) | 1619, 1883 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1801 |
| Aor51HI | AGCGCT | 2 cut(s) | 237, 2164 |
| AoxI | GGCC | 5 cut(s) | 149, 267, 412, 433, 550 |
| ApeKI | GCWGC | 8 cut(s) | 110, 758, 1357, 1703, 2140, 2202, 2384, 2713 |
| ApoI | RAATTY | 3 cut(s) | 545, 1201, 1740 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 530, 562, 684, 716, 814, 846 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1035 |
| Asp718I | GGTACC | 1 cut(s) | 2491 |
| AspLEI | GCGC | 5 cut(s) | 115, 238, 338, 758, 2165 |
| AspS9I | GGNCC | 3 cut(s) | 538, 1553, 1798 |
| AsuHPI | GGTGA | 8 cut(s) | 506, 662, 673, 754, 1367, 1430, 1709, 1773 |
| AsuII | TTCGAA | 1 cut(s) | 1519 |
| AvaII | GGWCC | 3 cut(s) | 538, 1553, 1798 |
| BaeGI | GKGCMC | 1 cut(s) | 2469 |
| BalI | TGGCCA | 1 cut(s) | 414 |
| BanI | GGYRCC | 1 cut(s) | 2491 |
| BanII | GRGCYC | 2 cut(s) | 231, 570 |
| BbsI | GAAGAC | 2 cut(s) | 316, 1218 |
| Bbv12I | GWGCWC | 2 cut(s) | 231, 600 |
| BbvCI | CCTCAGC | 2 cut(s) | 1284, 2420 |
| BbvI | GCAGC | 8 cut(s) | 122, 745, 1369, 1690, 2152, 2214, 2371, 2725 |
| BceAI | ACGGC | 2 cut(s) | 357, 594 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 482, 516 |
| BciT130I | CCWGG | 3 cut(s) | 536, 1551, 1802 |
| BclI | TGATCA | 3 cut(s) | 1081, 1684, 2209 |
| BcoDI | GTCTC | 3 cut(s) | 94, 1587, 2386 |
| BfaI | CTAG | 2 cut(s) | 167, 1217 |
| BfmI | CTRYAG | 1 cut(s) | 2483 |
| BfoI | RGCGCY | 5 cut(s) | 116, 239, 339, 759, 2166 |
| BfrI | CTTAAG | 1 cut(s) | 971 |
| BfuAI | ACCTGC | 1 cut(s) | 1052 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 578 |
| BlpI | GCTNAGC | 1 cut(s) | 599 |
| Bme1390I | CCNGG | 3 cut(s) | 536, 1551, 1802 |
| Bme18I | GGWCC | 3 cut(s) | 538, 1553, 1798 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 102 |
| BmgBI | CACGTC | 2 cut(s) | 989, 1198 |
| BmgT120I | GGNCC | 3 cut(s) | 538, 1553, 1798 |
| BmiI | GGNNCC | 4 cut(s) | 343, 540, 2493, 2539 |
| BmrFI | CCNGG | 3 cut(s) | 536, 1551, 1802 |
| BpiI | GAAGAC | 2 cut(s) | 316, 1218 |
| BpmI | CTGGAG | 3 cut(s) | 447, 731, 1823 |
| Bpu10I | CCTNAGC | 4 cut(s) | 453, 1284, 2420, 2573 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 599 |
| Bpu14I | TTCGAA | 1 cut(s) | 1519 |
| BpuEI | CTTGAG | 1 cut(s) | 503 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1758, 1833, 2370 |
| BsaHI | GRCGYC | 2 cut(s) | 581, 1486 |
| BsaJI | CCNNGG | 4 cut(s) | 146, 534, 1979, 2496 |
| BsaWI | WCCGGW | 2 cut(s) | 472, 1025 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 833, 836, 863, 866, 2408, 2438 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 147, 548, 617, 618, 1109, 1724, 2578 |
| Bse118I | RCCGGY | 3 cut(s) | 338, 431, 943 |
| Bse1I | ACTGG | 6 cut(s) | 415, 464, 921, 1456, 2316, 2548 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1758, 1833, 2370 |
| BseBI | CCWGG | 3 cut(s) | 536, 1551, 1802 |
| BseDI | CCNNGG | 4 cut(s) | 146, 534, 1979, 2496 |
| BseJI | GATNNNNATC | 3 cut(s) | 1758, 1833, 2370 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 147, 548, 617, 618, 1109, 1724, 2578 |
| BseMII | CTCAG | 5 cut(s) | 613, 1275, 1926, 2316, 2411 |
| BseNI | ACTGG | 6 cut(s) | 415, 464, 921, 1456, 2316, 2548 |
| BseRI | GAGGAG | 5 cut(s) | 241, 250, 857, 2290, 2429 |
| BseSI | GKGCMC | 1 cut(s) | 2469 |
| BseXI | GCAGC | 8 cut(s) | 122, 745, 1369, 1690, 2152, 2214, 2371, 2725 |
| BseYI | CCCAGC | 1 cut(s) | 964 |
| BsgI | GTGCAG | 2 cut(s) | 1052, 1689 |
| Bsh1236I | CGCG | 3 cut(s) | 148, 426, 2516 |
| Bsh1285I | CGRYCG | 1 cut(s) | 948 |
| BshFI | GGCC | 5 cut(s) | 151, 269, 414, 435, 552 |
| BshNI | GGYRCC | 1 cut(s) | 2491 |
| BsiEI | CGRYCG | 1 cut(s) | 948 |
| BsiHKAI | GWGCWC | 2 cut(s) | 231, 600 |
| BsiSI | CCGG | 5 cut(s) | 339, 432, 473, 944, 1026 |
| BslFI | GGGAC | 6 cut(s) | 19, 45, 128, 287, 351, 881 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 147, 548, 617, 618, 1109, 1724, 2578 |
| BsmAI | GTCTC | 3 cut(s) | 94, 1587, 2386 |
| BsmFI | GGGAC | 6 cut(s) | 19, 45, 128, 287, 351, 881 |
| BsmI | GAATGC | 2 cut(s) | 790, 1457 |
| BsnI | GGCC | 5 cut(s) | 151, 269, 414, 435, 552 |
| Bsp119I | TTCGAA | 1 cut(s) | 1519 |
| Bsp1286I | GDGCHC | 4 cut(s) | 231, 570, 600, 2469 |
| Bsp143I | GATC | 8 cut(s) | 317, 504, 1081, 1611, 1684, 1834, 1888, 2209 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 599 |
| Bsp19I | CCATGG | 1 cut(s) | 2496 |
| BspANI | GGCC | 5 cut(s) | 151, 269, 414, 435, 552 |
| BspCNI | CTCAG | 5 cut(s) | 612, 1276, 1927, 2315, 2412 |
| BspFNI | CGCG | 3 cut(s) | 148, 426, 2516 |
| BspLI | GGNNCC | 4 cut(s) | 343, 540, 2493, 2539 |
| BspMAI | CTGCAG | 1 cut(s) | 2487 |
| BspMI | ACCTGC | 1 cut(s) | 1052 |
| BspPI | GGATC | 2 cut(s) | 1619, 1883 |
| BspQI | GCTCTTC | 1 cut(s) | 786 |
| BspT104I | TTCGAA | 1 cut(s) | 1519 |
| BspT107I | GGYRCC | 1 cut(s) | 2491 |
| BspTI | CTTAAG | 1 cut(s) | 971 |
| BsrFI | RCCGGY | 3 cut(s) | 338, 431, 943 |
| BsrI | ACTGG | 6 cut(s) | 415, 464, 921, 1456, 2316, 2548 |
| BssAI | RCCGGY | 3 cut(s) | 338, 431, 943 |
| BssECI | CCNNGG | 4 cut(s) | 146, 534, 1979, 2496 |
| BssMI | GATC | 8 cut(s) | 317, 504, 1081, 1611, 1684, 1834, 1888, 2209 |
| BssNI | GRCGYC | 2 cut(s) | 581, 1486 |
| BssT1I | CCWWGG | 2 cut(s) | 1979, 2496 |
| Bst2UI | CCWGG | 3 cut(s) | 536, 1551, 1802 |
| Bst6I | CTCTTC | 4 cut(s) | 251, 259, 786, 896 |
| BstACI | GRCGYC | 2 cut(s) | 581, 1486 |
| BstAFI | CTTAAG | 1 cut(s) | 971 |
| BstBI | TTCGAA | 1 cut(s) | 1519 |
| BstC8I | GCNNGC | 8 cut(s) | 433, 437, 441, 570, 730, 1167, 2584, 2608 |
| BstDSI | CCRYGG | 2 cut(s) | 146, 2496 |
| BstFNI | CGCG | 3 cut(s) | 148, 426, 2516 |
| BstH2I | RGCGCY | 5 cut(s) | 116, 239, 339, 759, 2166 |
| BstHHI | GCGC | 5 cut(s) | 115, 238, 338, 758, 2165 |
| BstKTI | GATC | 8 cut(s) | 320, 507, 1084, 1614, 1687, 1837, 1891, 2212 |
| BstMAI | GTCTC | 3 cut(s) | 94, 1587, 2386 |
| BstMBI | GATC | 8 cut(s) | 317, 504, 1081, 1611, 1684, 1834, 1888, 2209 |
| BstMCI | CGRYCG | 1 cut(s) | 948 |
| BstNI | CCWGG | 3 cut(s) | 536, 1551, 1802 |
| BstNSI | RCATGY | 1 cut(s) | 1169 |
| BstSCI | CCNGG | 3 cut(s) | 534, 1549, 1800 |
| BstSFI | CTRYAG | 1 cut(s) | 2483 |
| BstSLI | GKGCMC | 1 cut(s) | 2469 |
| BstUI | CGCG | 3 cut(s) | 148, 426, 2516 |
| BstV1I | GCAGC | 8 cut(s) | 122, 745, 1369, 1690, 2152, 2214, 2371, 2725 |
| BstV2I | GAAGAC | 2 cut(s) | 316, 1218 |
| BstX2I | RGATCY | 1 cut(s) | 1611 |
| BstYI | RGATCY | 1 cut(s) | 1611 |
| BsuRI | GGCC | 5 cut(s) | 151, 269, 414, 435, 552 |
| BtgI | CCRYGG | 2 cut(s) | 146, 2496 |
| BtgZI | GCGATG | 1 cut(s) | 493 |
| BtrI | CACGTC | 2 cut(s) | 989, 1198 |
| BtsI | GCAGTG | 4 cut(s) | 393, 887, 2053, 2480 |
| BtsIMutI | CAGTG | 8 cut(s) | 393, 408, 471, 887, 928, 2053, 2309, 2480 |
| BveI | ACCTGC | 1 cut(s) | 1052 |
| Cac8I | GCNNGC | 8 cut(s) | 433, 437, 441, 570, 730, 1167, 2584, 2608 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1801 |
| CfoI | GCGC | 5 cut(s) | 115, 238, 338, 758, 2165 |
| Cfr10I | RCCGGY | 3 cut(s) | 338, 431, 943 |
| Cfr13I | GGNCC | 3 cut(s) | 538, 1553, 1798 |
| Cfr42I | CCGCGG | 1 cut(s) | 149 |
| CseI | GACGC | 2 cut(s) | 570, 1475 |
| Csp6I | GTAC | 4 cut(s) | 30, 2031, 2306, 2492 |
| CviQI | GTAC | 4 cut(s) | 30, 2031, 2306, 2492 |
| DpnI | GATC | 8 cut(s) | 319, 506, 1083, 1613, 1686, 1836, 1890, 2211 |
| DpnII | GATC | 8 cut(s) | 317, 504, 1081, 1611, 1684, 1834, 1888, 2209 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 299, 320 |
| DriI | GACNNNNNGTC | 1 cut(s) | 102 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 299, 320 |
| EaeI | YGGCCR | 3 cut(s) | 149, 412, 550 |
| Eam1104I | CTCTTC | 4 cut(s) | 251, 259, 786, 896 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 102 |
| EarI | CTCTTC | 4 cut(s) | 251, 259, 786, 896 |
| EciI | GGCGGA | 1 cut(s) | 832 |
| Ecl136II | GAGCTC | 1 cut(s) | 229 |
| Eco130I | CCWWGG | 2 cut(s) | 1979, 2496 |
| Eco24I | GRGCYC | 2 cut(s) | 231, 570 |
| Eco47I | GGWCC | 3 cut(s) | 538, 1553, 1798 |
| Eco47III | AGCGCT | 2 cut(s) | 237, 2164 |
| Eco53kI | GAGCTC | 1 cut(s) | 229 |
| Eco57I | CTGAAG | 1 cut(s) | 2465 |
| EcoICRI | GAGCTC | 1 cut(s) | 229 |
| EcoO109I | RGGNCCY | 2 cut(s) | 538, 1798 |
| EcoRI | GAATTC | 1 cut(s) | 1201 |
| EcoRII | CCWGG | 3 cut(s) | 534, 1549, 1800 |
| EcoT14I | CCWWGG | 2 cut(s) | 1979, 2496 |
| EcoT38I | GRGCYC | 2 cut(s) | 231, 570 |
| ErhI | CCWWGG | 2 cut(s) | 1979, 2496 |
| FaqI | GGGAC | 6 cut(s) | 19, 45, 128, 287, 351, 881 |
| FauI | CCCGC | 7 cut(s) | 153, 353, 377, 577, 634, 721, 2509 |
| FbaI | TGATCA | 3 cut(s) | 1081, 1684, 2209 |
| FblI | GTMKAC | 1 cut(s) | 1272 |
| FriOI | GRGCYC | 2 cut(s) | 231, 570 |
| FspBI | CTAG | 2 cut(s) | 167, 1217 |
| GlaI | GCGC | 5 cut(s) | 114, 237, 337, 757, 2164 |
| GsaI | CCCAGC | 1 cut(s) | 968 |
| GsuI | CTGGAG | 3 cut(s) | 447, 731, 1823 |
| HaeII | RGCGCY | 5 cut(s) | 116, 239, 339, 759, 2166 |
| HaeIII | GGCC | 5 cut(s) | 151, 269, 414, 435, 552 |
| HapII | CCGG | 5 cut(s) | 339, 432, 473, 944, 1026 |
| HgaI | GACGC | 2 cut(s) | 570, 1475 |
| HhaI | GCGC | 5 cut(s) | 115, 238, 338, 758, 2165 |
| Hin1I | GRCGYC | 2 cut(s) | 581, 1486 |
| Hin6I | GCGC | 5 cut(s) | 113, 236, 336, 756, 2163 |
| HinP1I | GCGC | 5 cut(s) | 113, 236, 336, 756, 2163 |
| HincII | GTYRAC | 2 cut(s) | 377, 2191 |
| HindII | GTYRAC | 2 cut(s) | 377, 2191 |
| HpaII | CCGG | 5 cut(s) | 339, 432, 473, 944, 1026 |
| HphI | GGTGA | 8 cut(s) | 506, 662, 673, 754, 1367, 1430, 1709, 1773 |
| Hpy166II | GTNNAC | 8 cut(s) | 377, 766, 1273, 1793, 1850, 1964, 2180, 2191 |
| Hpy188III | TCNNGA | 8 cut(s) | 520, 611, 710, 1133, 1531, 1763, 2039, 2213 |
| Hpy8I | GTNNAC | 8 cut(s) | 377, 766, 1273, 1793, 1850, 1964, 2180, 2191 |
| Hpy99I | CGWCG | 6 cut(s) | 268, 302, 423, 426, 586, 1491 |
| HpyAV | CCTTC | 8 cut(s) | 973, 977, 1084, 1130, 1336, 1589, 1871, 2261 |
| HpyCH4IV | ACGT | 2 cut(s) | 988, 1197 |
| HpySE526I | ACGT | 2 cut(s) | 988, 1197 |
| Hsp92I | GRCGYC | 2 cut(s) | 581, 1486 |
| HspAI | GCGC | 5 cut(s) | 113, 236, 336, 756, 2163 |
| KpnI | GGTACC | 1 cut(s) | 2495 |
| KroI | GCCGGC | 1 cut(s) | 431 |
| KroNI | GCCGGC | 1 cut(s) | 433 |
| Ksp22I | TGATCA | 3 cut(s) | 1081, 1684, 2209 |
| KspI | CCGCGG | 1 cut(s) | 149 |
| Kzo9I | GATC | 8 cut(s) | 317, 504, 1081, 1611, 1684, 1834, 1888, 2209 |
| LguI | GCTCTTC | 1 cut(s) | 786 |
| LmnI | GCTCC | 6 cut(s) | 226, 234, 844, 1880, 2045, 2416 |
| Lsp1109I | GCAGC | 8 cut(s) | 122, 745, 1369, 1690, 2152, 2214, 2371, 2725 |
| MaeI | CTAG | 2 cut(s) | 167, 1217 |
| MaeII | ACGT | 2 cut(s) | 988, 1197 |
| MaeIII | GTNAC | 5 cut(s) | 10, 23, 82, 1255, 1313 |
| MalI | GATC | 8 cut(s) | 319, 506, 1083, 1613, 1686, 1836, 1890, 2211 |
| MboI | GATC | 8 cut(s) | 317, 504, 1081, 1611, 1684, 1834, 1888, 2209 |
| MflI | RGATCY | 1 cut(s) | 1611 |
| MhlI | GDGCHC | 4 cut(s) | 231, 570, 600, 2469 |
| MlsI | TGGCCA | 1 cut(s) | 414 |
| MluNI | TGGCCA | 1 cut(s) | 414 |
| MlyI | GAGTC | 4 cut(s) | 179, 1589, 1910, 2291 |
| MmeI | TCCRAC | 2 cut(s) | 932, 2406 |
| Mox20I | TGGCCA | 1 cut(s) | 414 |
| MroNI | GCCGGC | 1 cut(s) | 431 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1035 |
| MscI | TGGCCA | 1 cut(s) | 414 |
| MseI | TTAA | 6 cut(s) | 191, 272, 972, 1335, 1434, 1911 |
| MslI | CAYNNNNRTG | 6 cut(s) | 464, 737, 1089, 1119, 1845, 1972 |
| Msp20I | TGGCCA | 1 cut(s) | 414 |
| MspA1I | CMGCKG | 2 cut(s) | 148, 1934 |
| MspCI | CTTAAG | 1 cut(s) | 971 |
| MspI | CCGG | 5 cut(s) | 339, 432, 473, 944, 1026 |
| MspR9I | CCNGG | 3 cut(s) | 536, 1551, 1802 |
| Mva1269I | GAATGC | 2 cut(s) | 790, 1457 |
| MvaI | CCWGG | 3 cut(s) | 536, 1551, 1802 |
| MvnI | CGCG | 3 cut(s) | 148, 426, 2516 |
| NaeI | GCCGGC | 1 cut(s) | 433 |
| NcoI | CCATGG | 1 cut(s) | 2496 |
| NdeII | GATC | 8 cut(s) | 317, 504, 1081, 1611, 1684, 1834, 1888, 2209 |
| NgoMIV | GCCGGC | 1 cut(s) | 431 |
| NlaIV | GGNNCC | 4 cut(s) | 343, 540, 2493, 2539 |
| NmuCI | GTSAC | 2 cut(s) | 82, 1313 |
| NspI | RCATGY | 1 cut(s) | 1169 |
| NspV | TTCGAA | 1 cut(s) | 1519 |
| OliI | CACNNNNGTG | 1 cut(s) | 464 |
| PaeI | GCATGC | 1 cut(s) | 1169 |
| PciSI | GCTCTTC | 1 cut(s) | 786 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 370, 555 |
| PctI | GAATGC | 2 cut(s) | 790, 1457 |
| PdiI | GCCGGC | 1 cut(s) | 433 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1035 |
| PflFI | GACNNNGTC | 2 cut(s) | 296, 580 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1109 |
| PleI | GAGTC | 4 cut(s) | 179, 1588, 1910, 2291 |
| PpsI | GAGTC | 4 cut(s) | 179, 1588, 1910, 2291 |
| PpuMI | RGGWCCY | 2 cut(s) | 538, 1798 |
| Psp124BI | GAGCTC | 1 cut(s) | 231 |
| Psp5II | RGGWCCY | 2 cut(s) | 538, 1798 |
| Psp6I | CCWGG | 3 cut(s) | 534, 1549, 1800 |
| PspFI | CCCAGC | 1 cut(s) | 964 |
| PspGI | CCWGG | 3 cut(s) | 534, 1549, 1800 |
| PspN4I | GGNNCC | 4 cut(s) | 343, 540, 2493, 2539 |
| PspPI | GGNCC | 3 cut(s) | 538, 1553, 1798 |
| PspPPI | RGGWCCY | 2 cut(s) | 538, 1798 |
| PstI | CTGCAG | 1 cut(s) | 2487 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1801 |
| PsuI | RGATCY | 1 cut(s) | 1611 |
| PsyI | GACNNNGTC | 2 cut(s) | 296, 580 |
| PvuII | CAGCTG | 1 cut(s) | 1934 |
| RsaI | GTAC | 4 cut(s) | 31, 2032, 2307, 2493 |
| RsaNI | GTAC | 4 cut(s) | 30, 2031, 2306, 2492 |
| RseI | CAYNNNNRTG | 6 cut(s) | 464, 737, 1089, 1119, 1845, 1972 |
| SacI | GAGCTC | 1 cut(s) | 231 |
| SacII | CCGCGG | 1 cut(s) | 149 |
| SapI | GCTCTTC | 1 cut(s) | 786 |
| SaqAI | TTAA | 6 cut(s) | 191, 272, 972, 1335, 1434, 1911 |
| Sau3AI | GATC | 8 cut(s) | 317, 504, 1081, 1611, 1684, 1834, 1888, 2209 |
| Sau96I | GGNCC | 3 cut(s) | 538, 1553, 1798 |
| SchI | GAGTC | 4 cut(s) | 179, 1589, 1910, 2291 |
| ScrFI | CCNGG | 3 cut(s) | 536, 1551, 1802 |
| SduI | GDGCHC | 4 cut(s) | 231, 570, 600, 2469 |
| SfcI | CTRYAG | 1 cut(s) | 2483 |
| Sfr303I | CCGCGG | 1 cut(s) | 149 |
| SfuI | TTCGAA | 1 cut(s) | 1519 |
| SgrBI | CCGCGG | 1 cut(s) | 149 |
| SinI | GGWCC | 3 cut(s) | 538, 1553, 1798 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 464, 737, 1089, 1119, 1845, 1972 |
| SmlI | CTYRAG | 2 cut(s) | 518, 971 |
| SmoI | CTYRAG | 2 cut(s) | 518, 971 |
| SphI | GCATGC | 1 cut(s) | 1169 |
| SspI | AATATT | 1 cut(s) | 2352 |
| SspMI | CTAG | 2 cut(s) | 167, 1217 |
| SstI | GAGCTC | 1 cut(s) | 231 |
| StyD4I | CCNGG | 3 cut(s) | 534, 1549, 1800 |
| StyI | CCWWGG | 2 cut(s) | 1979, 2496 |
| TaiI | ACGT | 2 cut(s) | 991, 1200 |
| TaqI | TCGA | 3 cut(s) | 558, 564, 1519 |
| TaqII | GACCGA | 1 cut(s) | 330 |
| TauI | GCSGC | 7 cut(s) | 151, 285, 351, 401, 404, 407, 1008 |
| Tru1I | TTAA | 6 cut(s) | 191, 272, 972, 1335, 1434, 1911 |
| Tru9I | TTAA | 6 cut(s) | 191, 272, 972, 1335, 1434, 1911 |
| TscAI | CASTG | 8 cut(s) | 400, 415, 471, 887, 928, 2060, 2316, 2487 |
| TseFI | GTSAC | 2 cut(s) | 82, 1313 |
| TseI | GCWGC | 8 cut(s) | 110, 758, 1357, 1703, 2140, 2202, 2384, 2713 |
| Tsp45I | GTSAC | 2 cut(s) | 82, 1313 |
| TspDTI | ATGAA | 9 cut(s) | 1050, 1338, 1464, 1502, 1784, 1940, 2280, 2289, 2415 |
| TspGWI | ACGGA | 3 cut(s) | 854, 1964, 2659 |
| TspRI | CASTG | 8 cut(s) | 400, 415, 471, 887, 928, 2060, 2316, 2487 |
| Tth111I | GACNNNGTC | 2 cut(s) | 296, 580 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1109 |
| Vha464I | CTTAAG | 1 cut(s) | 971 |
| VpaK11BI | GGWCC | 3 cut(s) | 538, 1553, 1798 |
| XapI | RAATTY | 3 cut(s) | 545, 1201, 1740 |
| XceI | RCATGY | 1 cut(s) | 1169 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2575 |
| XmiI | GTMKAC | 1 cut(s) | 1272 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1035 |
| XspI | CTAG | 2 cut(s) | 167, 1217 |