RchiOBHm_Chr6g0271611

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006195
Physical Location & Seq
Forward (+)
31467048 .. 31468967
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24361

Sequence Viewer

Length: 639 bp
ATGACGTCCTTGTTTTTGGACAAGGACGTTGGAATTGCAGAATTAGGTGTGAGAAAGAGGAAACGAGGGAGGAAGCCGAAAGTGAAAGGGCCAGCAGGGTCCAGCGGCGAGGTACTGGGCCTGCAGATTGTAAACAAGAACGGCGCTGCAGTTGACATCTGGGCTTTGCAGAATTCAGAAAACCCTTTTGGGGATGAGCTGAGGAGGAGGACGTTGGGTCTGGAGACTGAGGAGGAGTTGTTGGGTTTCATGAGGGAATTGGGTGGCCAGTGGGGGAGCAGGAGGAAAAAGAGGAAGATTGTCGACGCCACTGAATTCGGGGATGCCTTGCTCGGTTGGAAGCTCTTGCTCGGCCAAAGGAACGACGTGCTTGGATTTACTGCCGCCGATACATTAGCTCTACTTGACAACAATTTCTGTCCTGCAAGGAAGTTGCTTCTTTTTTGGAGTCCTTCTTTGGTCTTAATAATGCTGAAAGGCAAGATGGATTTGTGCAGTTGTTTGGTTTTTTATACATTGGATAACAAATATTCTTCAATAAGCTTTATTTGGGTACAACAGTATGCTGATAAAGATGGAGAAAGAAGGCAAGATGTGAGCTCCAGCTCTGCTATACTGGTGTCTGCTATATCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBD

Protein Analysis

212

Amino Acids

23.59

Weight (kDa)

9.38

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccI GTMKAC 1 cut(s) 303
AciI CCGC 2 cut(s) 105, 384
AcoI YGGCCR 2 cut(s) 265, 352
AcsI RAATTY 2 cut(s) 172, 314
AcyI GRCGYC 2 cut(s) 5, 306
AfaI GTAC 2 cut(s) 114, 555
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 1 cut(s) 537
AhdI GACNNNNNGTC 1 cut(s) 216
AjiI CACGTC 1 cut(s) 367
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 6 cut(s) 199, 343, 398, 543, 600, 606
AluI AGCT 6 cut(s) 199, 343, 398, 543, 600, 606
Alw21I GWGCWC 1 cut(s) 602
Alw26I GTCTC 1 cut(s) 218
AoxI GGCC 4 cut(s) 89, 118, 265, 352
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 2 cut(s) 172, 314
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 3 cut(s) 89, 99, 118
AvaII GGWCC 1 cut(s) 99
BaeI ACNNNNGTAYC 2 cut(s) 545, 578
BalI TGGCCA 1 cut(s) 267
BanII GRGCYC 1 cut(s) 602
Bbv12I GWGCWC 1 cut(s) 602
BbvCI CCTCAGC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 133
BccI CCATC 2 cut(s) 478, 569
BceAI ACGGC 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 218
BfmI CTRYAG 2 cut(s) 122, 147
BfoI RGCGCY 1 cut(s) 147
BisI GCNGC 3 cut(s) 106, 147, 384
BlsI GCNGC 3 cut(s) 107, 148, 385
Bme18I GGWCC 1 cut(s) 99
BmeRI GACNNNNNGTC 1 cut(s) 216
BmgBI CACGTC 1 cut(s) 367
BmgT120I GGNCC 3 cut(s) 89, 99, 118
BmiI GGNNCC 1 cut(s) 100
BmrI ACTGGG 1 cut(s) 125
BmsI GCATC 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 125
BpmI CTGGAG 2 cut(s) 242, 586
Bpu10I CCTNAGC 1 cut(s) 200
BsaHI GRCGYC 2 cut(s) 5, 306
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 3 cut(s) 120, 268, 621
BseGI GGATG 2 cut(s) 199, 328
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 191, 219
BseNI ACTGG 3 cut(s) 120, 268, 621
BseRI GAGGAG 4 cut(s) 217, 220, 245, 248
BseXI GCAGC 1 cut(s) 133
BsgI GTGCAG 1 cut(s) 514
BshFI GGCC 4 cut(s) 91, 120, 267, 354
BsiHKAI GWGCWC 1 cut(s) 602
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 4 cut(s) 91, 120, 267, 354
Bsp1286I GDGCHC 1 cut(s) 602
BspACI CCGC 2 cut(s) 105, 384
BspANI GGCC 4 cut(s) 91, 120, 267, 354
BspCNI CTCAG 2 cut(s) 192, 220
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 100
BspMAI CTGCAG 2 cut(s) 126, 151
BsrI ACTGG 3 cut(s) 120, 268, 621
BssNI GRCGYC 2 cut(s) 5, 306
Bst4CI ACNGT 1 cut(s) 561
BstACI GRCGYC 2 cut(s) 5, 306
BstC8I GCNNGC 2 cut(s) 93, 122
BstDEI CTNAG 2 cut(s) 200, 228
BstF5I GGATG 2 cut(s) 199, 328
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstMAI GTCTC 1 cut(s) 218
BstSFI CTRYAG 2 cut(s) 122, 147
BstV1I GCAGC 1 cut(s) 133
BsuRI GGCC 4 cut(s) 91, 120, 267, 354
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 199, 328
BtsIMutI CAGTG 2 cut(s) 275, 309
Cac8I GCNNGC 2 cut(s) 93, 122
CciI TCATGA 1 cut(s) 249
CfoI GCGC 1 cut(s) 146
Cfr13I GGNCC 3 cut(s) 89, 99, 118
CseI GACGC 1 cut(s) 314
Csp6I GTAC 2 cut(s) 113, 554
CviAII CATG 1 cut(s) 250
CviQI GTAC 2 cut(s) 113, 554
DdeI CTNAG 2 cut(s) 200, 228
DriI GACNNNNNGTC 1 cut(s) 216
EaeI YGGCCR 2 cut(s) 265, 352
Eam1105I GACNNNNNGTC 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 600
Eco24I GRGCYC 1 cut(s) 602
Eco47I GGWCC 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 600
EcoICRI GAGCTC 1 cut(s) 600
EcoRI GAATTC 2 cut(s) 172, 314
EcoT38I GRGCYC 1 cut(s) 602
FaeI CATG 1 cut(s) 253
FaiI YATR 5 cut(s) 251, 513, 564, 614, 629
FatI CATG 1 cut(s) 249
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 106, 147, 384
FokI GGATG 2 cut(s) 206, 335
FriOI GRGCYC 1 cut(s) 602
Fsp4HI GCNGC 3 cut(s) 106, 147, 384
GlaI GCGC 1 cut(s) 145
GluI GCNGC 3 cut(s) 106, 147, 384
GsuI CTGGAG 2 cut(s) 242, 586
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 4 cut(s) 91, 120, 267, 354
HgaI GACGC 1 cut(s) 314
HhaI GCGC 1 cut(s) 146
Hin1I GRCGYC 2 cut(s) 5, 306
Hin1II CATG 1 cut(s) 253
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HincII GTYRAC 2 cut(s) 154, 304
HindII GTYRAC 2 cut(s) 154, 304
HindIII AAGCTT 1 cut(s) 541
HinfI GANTC 1 cut(s) 448
Hpy166II GTNNAC 3 cut(s) 133, 154, 304
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 2 cut(s) 221, 250
Hpy8I GTNNAC 3 cut(s) 133, 154, 304
Hpy99I CGWCG 2 cut(s) 308, 368
HpyAV CCTTC 2 cut(s) 462, 579
HpyCH4III ACNGT 1 cut(s) 561
HpyCH4IV ACGT 4 cut(s) 5, 27, 212, 366
HpyCH4V TGCA 6 cut(s) 38, 124, 149, 169, 425, 495
HpyF3I CTNAG 2 cut(s) 200, 228
HpySE526I ACGT 4 cut(s) 5, 27, 212, 366
Hsp92I GRCGYC 2 cut(s) 5, 306
Hsp92II CATG 1 cut(s) 253
HspAI GCGC 1 cut(s) 144
LmnI GCTCC 2 cut(s) 276, 605
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 313
MaeII ACGT 4 cut(s) 5, 27, 212, 366
MboII GAAGA 2 cut(s) 307, 525
MhlI GDGCHC 1 cut(s) 602
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 6 cut(s) 33, 41, 172, 257, 314, 412
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 1 cut(s) 457
MmeI TCCRAC 2 cut(s) 10, 317
Mox20I TGGCCA 1 cut(s) 267
MscI TGGCCA 1 cut(s) 267
MseI TTAA 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 105
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 1 cut(s) 100
NmeAIII GCCGAG 1 cut(s) 330
PagI TCATGA 1 cut(s) 249
PkrI GCNGC 3 cut(s) 107, 148, 385
PleI GAGTC 1 cut(s) 456
PpsI GAGTC 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 602
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 3 cut(s) 89, 99, 118
PstI CTGCAG 2 cut(s) 126, 151
RsaI GTAC 2 cut(s) 114, 555
RsaNI GTAC 2 cut(s) 113, 554
SacI GAGCTC 1 cut(s) 602
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 3 cut(s) 106, 147, 384
Sau96I GGNCC 3 cut(s) 89, 99, 118
SchI GAGTC 1 cut(s) 457
SduI GDGCHC 1 cut(s) 602
SfaNI GCATC 1 cut(s) 313
SfcI CTRYAG 2 cut(s) 122, 147
SinI GGWCC 1 cut(s) 99
Sse9I AATT 6 cut(s) 33, 41, 172, 257, 314, 412
SsiI CCGC 2 cut(s) 105, 384
SspI AATATT 1 cut(s) 530
SstI GAGCTC 1 cut(s) 602
TaaI ACNGT 1 cut(s) 561
TaiI ACGT 4 cut(s) 8, 30, 215, 369
TaqI TCGA 1 cut(s) 303
TasI AATT 6 cut(s) 33, 41, 172, 257, 314, 412
TauI GCSGC 2 cut(s) 108, 386
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 2 cut(s) 275, 316
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 238
TspRI CASTG 2 cut(s) 275, 316
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 2 cut(s) 172, 314
XmiI GTMKAC 1 cut(s) 303
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.