Rh6CG180700

zinc finger

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
28849528 .. 28854518
4991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG180700.1

Sequence Viewer

Length: 1854 bp
ATGTTTCCTTTTTATTTTTATTTTTTAGTTATAAACCTAACTCATGGTTTTATACTTGCATGTCACTTGATATTTTCCAGCCCTACTGGACAACAATTTCTGTCCTGCAAGGAAGTTGCTTCTTTTTTGGAGTCCTTCTTTGGTCTTAATAATGCTGAAAGGCAAGATGGTGATGGTGGTGAGAACATTCAGGAGGACTGTGTAATGGCTACCGAAAATGTGAGTATATATTTGTGCAGTTGTTTGGTTTTTTATACATTGGATAACAAATATTCTTCAATAAGCTTTATTTGGGTACAACAGCATGCTGATAAAGATGGAGAAAGAAGGCAAGATGTGAGCTCCAGCTCTGCTATACTGGTGTCTTCTATATCTAATGAGCCTGAGAATAAAGTTAGCGTATCGGAAATGGAAAATCTTGCTGAGGTTCAGATACATGACCTTTTTGAATGTCACAAATGCAGTATGACTTTTGCCGAGAAGGATTCATATTTGCAGCATCTATTGTCCTTTCACCAGAGGACTACAAGGAGGTATAGACTTGGTTCGACAGTTGGGGACGGTGTGATAATTAAGGATGGGAAATATGAGTGCCAGTTCTGCCATAAGGTATTTCTGGAAAGGCGTCGCTATAATGGGCATGTAGGAATCCATGTTCGAAATTATGTGAGGAGGGTGGAAGAGTCGCCAGCTCCAACAACTCTTCAAAAGAAAATAGAGTCTCCAACAAGGGAAGGTTTGCTATCAAGGAACTCTAAAATGGATGCTTTGATTGAAATTGCTCAAAACTCTATCCTCGAAACCTCCACTGCTGGACCAAATGAGGAATTAAAAGGTGGTACTACACCAGATCCATACATCAATATTAGTTCAGAAACTCCCGCTTCCAATAAACTCCCTTCCAATTCTCATCTAGAAATGAACATAGAATCTAAACTGACTGAACAGGACCTGGAAGATCTTATGATTGATGCAATTAATGAAGATGAGCAAGAGAGTGAGCATACAATAACTGATGGAAGTATGGAGGAAGCTGTTGATGCTATGGAAGTTGTAGATGATAAGGTGAATTCTTGTTTGGTTACCACTGCCTCATCTGCTGAAGAGAAAAATGGGAAGACATCTGAAAGGTCTGTGGAGATAAATGGTCTGGCACCCACCTCTGATGAATTGGAGATGTCTGGCACCAAGCAGGAGAATGCTTCTGAATGTCCCCATGTACATGCTTCTTCAAATAATAAATCTATTAGTGATGTTGCGGACAATGTAAAATGTGCACCTGCATTAGAGCATCCCAGTCCCGTTGAAGTCGATAAACAAAAGCATACCGAACCAATTGGTAGCATCGATCAACCTCAACCAGCTAATGATAGTTCCTTAGAGTTCCATGCTTCTAACAGAAATGAACTCCGAAGTGGGGTTTGTGACACCTCAATGTCATTGGTGCGACCATTGCTCTGTCTTCCCACATCCAATGCAATTTTGCAGAAGGGAGACGAACATCTTATTGGTGTTGGCCAGAGCGGTGACCATGTAATGGATCTAGAGGATCTGCAACAACATGAAATAGAACATCTGAAGCATGGTTCAGCTGCTGGGCAAGAATCTTTTATACTAGAGGAGGTACCGATTGATATGACAAATAGTTCAGAGATGCAAAAATCAGTTGGTTCCTCTGTCCAGTTTGAACCAGAAGAAGTGATGCTAAACATGGCTGGCAGCAATCAGCTTACAACTGCTTGTATCTGGTGTGGAGTAGATTTCAAACACGAGGCTGTTGATTATGATGTACAACCCGATTCTGTTGGCTTTATGTGTCCAGTGTGCAAGGCAAAAATTTCTGAACGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

617

Amino Acids

68.44

Weight (kDa)

4.72

Isoelectric Point (pI)

63.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 32
AarI CACCTGC 1 cut(s) 1288
Acc36I ACCTGC 1 cut(s) 1288
Acc65I GGTACC 1 cut(s) 1624
AccB1I GGYRCC 3 cut(s) 1153, 1184, 1624
AccB7I CCANNNNNTGG 1 cut(s) 1537
AccBSI CCGCTC 1 cut(s) 1524
AciI CCGC 3 cut(s) 882, 1259, 1524
AclWI GGATC 3 cut(s) 845, 1548, 1557
AcoI YGGCCR 1 cut(s) 1516
AcsI RAATTY 2 cut(s) 1069, 1836
AcuI CTGAAG 2 cut(s) 1122, 1598
AcyI GRCGYC 1 cut(s) 625
AfaI GTAC 5 cut(s) 297, 841, 1221, 1626, 1791
AfiI CCNNNNNNNGG 2 cut(s) 1417, 1537
AgsI TTSAA 8 cut(s) 279, 449, 707, 776, 1233, 1307, 1688, 1765
AjnI CCWGG 1 cut(s) 951
AjuI GAANNNNNNNTTGG 4 cut(s) 1061, 1093, 1491, 1523
AloI GAACNNNNNNTCC 2 cut(s) 639, 671
AluBI AGCT 8 cut(s) 285, 342, 348, 692, 1034, 1364, 1592, 1729
AluI AGCT 8 cut(s) 285, 342, 348, 692, 1034, 1364, 1592, 1729
Alw21I GWGCWC 2 cut(s) 344, 1279
Alw26I GTCTC 2 cut(s) 726, 1488
Alw44I GTGCAC 1 cut(s) 1275
AlwI GGATC 3 cut(s) 845, 1548, 1557
AlwNI CAGNNNCTG 2 cut(s) 952, 1595
AoxI GGCC 1 cut(s) 1516
ApaLI GTGCAC 1 cut(s) 1275
ApeKI GCWGC 3 cut(s) 496, 1592, 1719
ApoI RAATTY 2 cut(s) 1069, 1836
AseI ATTAAT 1 cut(s) 978
Asp718I GGTACC 1 cut(s) 1624
AspS9I GGNCC 2 cut(s) 815, 949
AsuHPI GGTGA 5 cut(s) 182, 191, 506, 1078, 1538
AsuII TTCGAA 1 cut(s) 658
AvaII GGWCC 2 cut(s) 815, 949
BaeGI GKGCMC 1 cut(s) 1279
BalI TGGCCA 1 cut(s) 1518
BanI GGYRCC 3 cut(s) 1153, 1184, 1624
BanII GRGCYC 1 cut(s) 344
BauI CACGAG 1 cut(s) 1769
BbsI GAAGAC 3 cut(s) 357, 1124, 1454
Bbv12I GWGCWC 2 cut(s) 344, 1279
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 3 cut(s) 508, 1579, 1731
BccI CCATC 5 cut(s) 161, 167, 311, 572, 1010
BciT130I CCWGG 1 cut(s) 953
BcoDI GTCTC 2 cut(s) 726, 1488
BfaI CTAG 3 cut(s) 914, 1544, 1616
BfuAI ACCTGC 1 cut(s) 1288
BglII AGATCT 1 cut(s) 958
BisI GCNGC 3 cut(s) 497, 1593, 1720
BlsI GCNGC 3 cut(s) 498, 1594, 1721
Bme1390I CCNGG 1 cut(s) 953
Bme18I GGWCC 2 cut(s) 815, 949
BmgT120I GGNCC 2 cut(s) 815, 949
BmiI GGNNCC 4 cut(s) 1155, 1186, 1626, 1672
BmrFI CCNGG 1 cut(s) 953
BmrI ACTGGG 1 cut(s) 1290
BmsI GCATC 8 cut(s) 508, 754, 961, 1030, 1300, 1353, 1644, 1692
BmuI ACTGGG 1 cut(s) 1290
BpiI GAAGAC 3 cut(s) 357, 1124, 1454
BpmI CTGGAG 1 cut(s) 328
Bpu10I CCTNAGC 1 cut(s) 423
Bpu14I TTCGAA 1 cut(s) 658
Bsa29I ATCGAT 1 cut(s) 1347
BsaHI GRCGYC 1 cut(s) 625
Bsc4I CCNNNNNNNGG 2 cut(s) 1417, 1537
Bse1I ACTGG 6 cut(s) 91, 363, 595, 1296, 1681, 1820
Bse3DI GCAATG 1 cut(s) 1451
BseBI CCWGG 1 cut(s) 953
BseCI ATCGAT 1 cut(s) 1347
BseGI GGATG 4 cut(s) 583, 769, 1291, 1469
BseLI CCNNNNNNNGG 2 cut(s) 1417, 1537
BseMI GCAATG 1 cut(s) 1451
BseMII CTCAG 2 cut(s) 375, 414
BseNI ACTGG 6 cut(s) 91, 363, 595, 1296, 1681, 1820
BseRI GAGGAG 2 cut(s) 685, 1634
BseSI GKGCMC 1 cut(s) 1279
BseXI GCAGC 3 cut(s) 508, 1579, 1731
BseYI CCCAGC 1 cut(s) 1595
BsgI GTGCAG 1 cut(s) 256
BshFI GGCC 1 cut(s) 1518
BshNI GGYRCC 3 cut(s) 1153, 1184, 1624
BshVI ATCGAT 1 cut(s) 1347
BsiHKAI GWGCWC 2 cut(s) 344, 1279
BslFI GGGAC 3 cut(s) 572, 1197, 1284
BslI CCNNNNNNNGG 2 cut(s) 1417, 1537
BsmAI GTCTC 2 cut(s) 726, 1488
BsmBI CGTCTC 1 cut(s) 1488
BsmFI GGGAC 3 cut(s) 572, 1197, 1284
BsmI GAATGC 1 cut(s) 1204
BsnI GGCC 1 cut(s) 1518
Bsp119I TTCGAA 1 cut(s) 658
Bsp1286I GDGCHC 2 cut(s) 344, 1279
Bsp1407I TGTACA 2 cut(s) 1219, 1789
Bsp143I GATC 5 cut(s) 850, 958, 1348, 1540, 1549
BspACI CCGC 3 cut(s) 882, 1259, 1524
BspANI GGCC 1 cut(s) 1518
BspCNI CTCAG 2 cut(s) 376, 415
BspDI ATCGAT 1 cut(s) 1347
BspLI GGNNCC 4 cut(s) 1155, 1186, 1626, 1672
BspMI ACCTGC 1 cut(s) 1288
BspPI GGATC 3 cut(s) 845, 1548, 1557
BspT104I TTCGAA 1 cut(s) 658
BspT107I GGYRCC 3 cut(s) 1153, 1184, 1624
BsrBI CCGCTC 1 cut(s) 1524
BsrDI GCAATG 1 cut(s) 1451
BsrGI TGTACA 2 cut(s) 1219, 1789
BsrI ACTGG 6 cut(s) 91, 363, 595, 1296, 1681, 1820
BssMI GATC 5 cut(s) 850, 958, 1348, 1540, 1549
BssNI GRCGYC 1 cut(s) 625
BssSI CACGAG 1 cut(s) 1769
Bst2BI CACGAG 1 cut(s) 1769
Bst2UI CCWGG 1 cut(s) 953
Bst4CI ACNGT 3 cut(s) 200, 553, 563
Bst6I CTCTTC 3 cut(s) 675, 708, 1098
BstACI GRCGYC 1 cut(s) 625
BstAUI TGTACA 2 cut(s) 1219, 1789
BstBI TTCGAA 1 cut(s) 658
BstC8I GCNNGC 3 cut(s) 306, 690, 1717
BstDEI CTNAG 3 cut(s) 384, 423, 1378
BstEII GGTNACC 2 cut(s) 1081, 1526
BstF5I GGATG 4 cut(s) 583, 769, 1291, 1469
BstKTI GATC 5 cut(s) 853, 961, 1351, 1543, 1552
BstMAI GTCTC 2 cut(s) 726, 1488
BstMBI GATC 5 cut(s) 850, 958, 1348, 1540, 1549
BstMWI GCNNNNNNNGC 4 cut(s) 600, 1040, 1097, 1453
BstNI CCWGG 1 cut(s) 953
BstNSI RCATGY 4 cut(s) 63, 308, 644, 1226
BstPI GGTNACC 2 cut(s) 1081, 1526
BstSCI CCNGG 1 cut(s) 951
BstSLI GKGCMC 1 cut(s) 1279
BstV1I GCAGC 3 cut(s) 508, 1579, 1731
BstV2I GAAGAC 3 cut(s) 357, 1124, 1454
BstX2I RGATCY 4 cut(s) 850, 958, 1540, 1549
BstYI RGATCY 4 cut(s) 850, 958, 1540, 1549
Bsu15I ATCGAT 1 cut(s) 1347
BsuRI GGCC 1 cut(s) 1518
BsuTUI ATCGAT 1 cut(s) 1347
BtsCI GGATG 4 cut(s) 583, 769, 1291, 1469
BtsI GCAGTG 2 cut(s) 807, 1086
BtsIMutI CAGTG 3 cut(s) 807, 1086, 1827
BveI ACCTGC 1 cut(s) 1288
Cac8I GCNNGC 3 cut(s) 306, 690, 1717
CaiI CAGNNNCTG 2 cut(s) 952, 1595
Cfr13I GGNCC 2 cut(s) 815, 949
ClaI ATCGAT 1 cut(s) 1347
CseI GACGC 1 cut(s) 614
Csp6I GTAC 5 cut(s) 296, 840, 1220, 1625, 1790
CviQI GTAC 5 cut(s) 296, 840, 1220, 1625, 1790
DdeI CTNAG 3 cut(s) 384, 423, 1378
DpnI GATC 5 cut(s) 852, 960, 1350, 1542, 1551
DpnII GATC 5 cut(s) 850, 958, 1348, 1540, 1549
EaeI YGGCCR 1 cut(s) 1516
Eam1104I CTCTTC 3 cut(s) 675, 708, 1098
EarI CTCTTC 3 cut(s) 675, 708, 1098
Ecl136II GAGCTC 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 344
Eco47I GGWCC 2 cut(s) 815, 949
Eco53kI GAGCTC 1 cut(s) 342
Eco57I CTGAAG 2 cut(s) 1122, 1598
Eco91I GGTNACC 2 cut(s) 1081, 1526
EcoICRI GAGCTC 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 949
EcoO65I GGTNACC 2 cut(s) 1081, 1526
EcoRI GAATTC 1 cut(s) 1069
EcoRII CCWGG 1 cut(s) 951
EcoT38I GRGCYC 1 cut(s) 344
Esp3I CGTCTC 1 cut(s) 1488
FaqI GGGAC 3 cut(s) 572, 1197, 1284
FauI CCCGC 1 cut(s) 889
Fnu4HI GCNGC 3 cut(s) 497, 1593, 1720
FokI GGATG 4 cut(s) 590, 776, 1278, 1456
FriOI GRGCYC 1 cut(s) 344
Fsp4HI GCNGC 3 cut(s) 497, 1593, 1720
FspBI CTAG 3 cut(s) 914, 1544, 1616
GluI GCNGC 3 cut(s) 497, 1593, 1720
GsaI CCCAGC 1 cut(s) 1599
GsuI CTGGAG 1 cut(s) 328
HaeIII GGCC 1 cut(s) 1518
HgaI GACGC 1 cut(s) 614
Hin1I GRCGYC 1 cut(s) 625
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 8 cut(s) 131, 485, 648, 683, 719, 929, 1604, 1799
HphI GGTGA 5 cut(s) 182, 191, 506, 1078, 1538
Hpy166II GTNNAC 1 cut(s) 1277
Hpy188III TCNNGA 4 cut(s) 191, 617, 914, 1544
Hpy8I GTNNAC 1 cut(s) 1277
Hpy99I CGWCG 1 cut(s) 630
HpyAV CCTTC 6 cut(s) 145, 321, 475, 728, 909, 1483
HpyCH4III ACNGT 3 cut(s) 200, 553, 563
HpyCH4IV ACGT 1 cut(s) 1846
HpyF10VI GCNNNNNNNGC 4 cut(s) 600, 1040, 1097, 1453
HpyF3I CTNAG 3 cut(s) 384, 423, 1378
HpySE526I ACGT 1 cut(s) 1846
Hsp92I GRCGYC 1 cut(s) 625
KpnI GGTACC 1 cut(s) 1628
Kzo9I GATC 5 cut(s) 850, 958, 1348, 1540, 1549
LmnI GCTCC 2 cut(s) 347, 697
Lsp1109I GCAGC 3 cut(s) 508, 1579, 1731
LweI GCATC 8 cut(s) 508, 754, 961, 1030, 1300, 1353, 1644, 1692
MaeI CTAG 3 cut(s) 914, 1544, 1616
MaeII ACGT 1 cut(s) 1846
MaeIII GTNAC 5 cut(s) 62, 452, 1081, 1424, 1526
MalI GATC 5 cut(s) 852, 960, 1350, 1542, 1551
MbiI CCGCTC 1 cut(s) 1524
MboI GATC 5 cut(s) 850, 958, 1348, 1540, 1549
MfeI CAATTG 1 cut(s) 1335
MflI RGATCY 4 cut(s) 850, 958, 1540, 1549
MhlI GDGCHC 2 cut(s) 344, 1279
MlsI TGGCCA 1 cut(s) 1518
MluNI TGGCCA 1 cut(s) 1518
MlyI GAGTC 3 cut(s) 140, 692, 728
MmeI TCCRAC 2 cut(s) 719, 749
Mox20I TGGCCA 1 cut(s) 1518
MscI TGGCCA 1 cut(s) 1518
MseI TTAA 4 cut(s) 147, 573, 830, 978
MslI CAYNNNNRTG 2 cut(s) 1221, 1433
Msp20I TGGCCA 1 cut(s) 1518
MspA1I CMGCKG 1 cut(s) 1592
MspR9I CCNGG 1 cut(s) 953
MunI CAATTG 1 cut(s) 1335
Mva1269I GAATGC 1 cut(s) 1204
MvaI CCWGG 1 cut(s) 953
MwoI GCNNNNNNNGC 4 cut(s) 600, 1040, 1097, 1453
NdeII GATC 5 cut(s) 850, 958, 1348, 1540, 1549
NlaIV GGNNCC 4 cut(s) 1155, 1186, 1626, 1672
NmeAIII GCCGAG 1 cut(s) 502
NmuCI GTSAC 4 cut(s) 62, 452, 1424, 1526
NspI RCATGY 4 cut(s) 63, 308, 644, 1226
NspV TTCGAA 1 cut(s) 658
PaeI GCATGC 1 cut(s) 308
PaqCI CACCTGC 1 cut(s) 1288
PctI GAATGC 1 cut(s) 1204
PfeI GAWTC 5 cut(s) 485, 648, 929, 1604, 1799
PflMI CCANNNNNTGG 1 cut(s) 1537
PkrI GCNGC 3 cut(s) 498, 1594, 1721
PleI GAGTC 3 cut(s) 139, 691, 727
PpsI GAGTC 3 cut(s) 139, 691, 727
PpuMI RGGWCCY 1 cut(s) 949
PshBI ATTAAT 1 cut(s) 978
PsiI TTATAA 1 cut(s) 32
Psp124BI GAGCTC 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 949
Psp6I CCWGG 1 cut(s) 951
PspEI GGTNACC 2 cut(s) 1081, 1526
PspFI CCCAGC 1 cut(s) 1595
PspGI CCWGG 1 cut(s) 951
PspN4I GGNNCC 4 cut(s) 1155, 1186, 1626, 1672
PspPI GGNCC 2 cut(s) 815, 949
PspPPI RGGWCCY 1 cut(s) 949
PstNI CAGNNNCTG 2 cut(s) 952, 1595
PsuI RGATCY 4 cut(s) 850, 958, 1540, 1549
PvuII CAGCTG 1 cut(s) 1592
RsaI GTAC 5 cut(s) 297, 841, 1221, 1626, 1791
RsaNI GTAC 5 cut(s) 296, 840, 1220, 1625, 1790
RseI CAYNNNNRTG 2 cut(s) 1221, 1433
SacI GAGCTC 1 cut(s) 344
SaqAI TTAA 4 cut(s) 147, 573, 830, 978
SatI GCNGC 3 cut(s) 497, 1593, 1720
Sau3AI GATC 5 cut(s) 850, 958, 1348, 1540, 1549
Sau96I GGNCC 2 cut(s) 815, 949
SchI GAGTC 3 cut(s) 140, 692, 728
ScrFI CCNGG 1 cut(s) 953
SduI GDGCHC 2 cut(s) 344, 1279
SfaNI GCATC 8 cut(s) 508, 754, 961, 1030, 1300, 1353, 1644, 1692
SfuI TTCGAA 1 cut(s) 658
SinI GGWCC 2 cut(s) 815, 949
SmiMI CAYNNNNRTG 2 cut(s) 1221, 1433
SphI GCATGC 1 cut(s) 308
SsiI CCGC 3 cut(s) 882, 1259, 1524
SspI AATATT 2 cut(s) 272, 865
SspMI CTAG 3 cut(s) 914, 1544, 1616
SstI GAGCTC 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 951
TaaI ACNGT 3 cut(s) 200, 553, 563
TaiI ACGT 1 cut(s) 1849
TaqI TCGA 5 cut(s) 548, 658, 798, 1311, 1347
TatI WGTACW 2 cut(s) 1219, 1789
TfiI GAWTC 5 cut(s) 485, 648, 929, 1604, 1799
Tru1I TTAA 4 cut(s) 147, 573, 830, 978
Tru9I TTAA 4 cut(s) 147, 573, 830, 978
TscAI CASTG 3 cut(s) 814, 1093, 1827
TseFI GTSAC 4 cut(s) 62, 452, 1424, 1526
TseI GCWGC 3 cut(s) 496, 1592, 1719
Tsp45I GTSAC 4 cut(s) 62, 452, 1424, 1526
TspDTI ATGAA 6 cut(s) 477, 935, 996, 1182, 1419, 1578
TspRI CASTG 3 cut(s) 814, 1093, 1827
Van91I CCANNNNNTGG 1 cut(s) 1537
VneI GTGCAC 1 cut(s) 1275
VpaK11BI GGWCC 2 cut(s) 815, 949
VspI ATTAAT 1 cut(s) 978
XapI RAATTY 2 cut(s) 1069, 1836
XbaI TCTAGA 2 cut(s) 913, 1543
XceI RCATGY 4 cut(s) 63, 308, 644, 1226
XspI CTAG 3 cut(s) 914, 1544, 1616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.