zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G22310 AT1G22310 |
| fragaria_vesca | FvH4_2g11920 FvH4_2g11920 |
| malus_domestica | MD05G1043400.v1.1 MD10G1050700.v1.1 |
| prunus_persica | Prupe.8G062800_v2.0.a1 Prupe.8G062800_v2.0.a1 |
| pyrus_communis | pycom05g03580 pycom05g03610 pycom10g03570 |
| rosa_chinensis | RchiOBHm_Chr6g0271611 RchiOBHm_Chr6g0271621 RchiOBHm_Chr6g0271751 RchiOBHm_Chr6g0271781 |
| rosa_laevigata | RLG00000013717 RLG00000013732 |
| rosa_multiflora | Rmu_co8510743.1_g000001 Rmu_sc0002396.1_g000008 |
| rosa_roxburghii | Rroxscaffold_173G00435060 Rroxscaffold_7G00196650 |
| rosa_rugosa | Rorug06G0062300 |
| rosa_samantha | Rh6AG181100 Rh6BG186200 Rh6CG180700 Rh6CG181600 |
| rosa_wichuraiana | Rw6G015530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 32 |
| AarI | CACCTGC | 1 cut(s) | 1288 |
| Acc36I | ACCTGC | 1 cut(s) | 1288 |
| Acc65I | GGTACC | 1 cut(s) | 1624 |
| AccB1I | GGYRCC | 3 cut(s) | 1153, 1184, 1624 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1537 |
| AccBSI | CCGCTC | 1 cut(s) | 1524 |
| AciI | CCGC | 3 cut(s) | 882, 1259, 1524 |
| AclWI | GGATC | 3 cut(s) | 845, 1548, 1557 |
| AcoI | YGGCCR | 1 cut(s) | 1516 |
| AcsI | RAATTY | 2 cut(s) | 1069, 1836 |
| AcuI | CTGAAG | 2 cut(s) | 1122, 1598 |
| AcyI | GRCGYC | 1 cut(s) | 625 |
| AfaI | GTAC | 5 cut(s) | 297, 841, 1221, 1626, 1791 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1417, 1537 |
| AgsI | TTSAA | 8 cut(s) | 279, 449, 707, 776, 1233, 1307, 1688, 1765 |
| AjnI | CCWGG | 1 cut(s) | 951 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1061, 1093, 1491, 1523 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 639, 671 |
| AluBI | AGCT | 8 cut(s) | 285, 342, 348, 692, 1034, 1364, 1592, 1729 |
| AluI | AGCT | 8 cut(s) | 285, 342, 348, 692, 1034, 1364, 1592, 1729 |
| Alw21I | GWGCWC | 2 cut(s) | 344, 1279 |
| Alw26I | GTCTC | 2 cut(s) | 726, 1488 |
| Alw44I | GTGCAC | 1 cut(s) | 1275 |
| AlwI | GGATC | 3 cut(s) | 845, 1548, 1557 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 952, 1595 |
| AoxI | GGCC | 1 cut(s) | 1516 |
| ApaLI | GTGCAC | 1 cut(s) | 1275 |
| ApeKI | GCWGC | 3 cut(s) | 496, 1592, 1719 |
| ApoI | RAATTY | 2 cut(s) | 1069, 1836 |
| AseI | ATTAAT | 1 cut(s) | 978 |
| Asp718I | GGTACC | 1 cut(s) | 1624 |
| AspS9I | GGNCC | 2 cut(s) | 815, 949 |
| AsuHPI | GGTGA | 5 cut(s) | 182, 191, 506, 1078, 1538 |
| AsuII | TTCGAA | 1 cut(s) | 658 |
| AvaII | GGWCC | 2 cut(s) | 815, 949 |
| BaeGI | GKGCMC | 1 cut(s) | 1279 |
| BalI | TGGCCA | 1 cut(s) | 1518 |
| BanI | GGYRCC | 3 cut(s) | 1153, 1184, 1624 |
| BanII | GRGCYC | 1 cut(s) | 344 |
| BauI | CACGAG | 1 cut(s) | 1769 |
| BbsI | GAAGAC | 3 cut(s) | 357, 1124, 1454 |
| Bbv12I | GWGCWC | 2 cut(s) | 344, 1279 |
| BbvCI | CCTCAGC | 1 cut(s) | 423 |
| BbvI | GCAGC | 3 cut(s) | 508, 1579, 1731 |
| BccI | CCATC | 5 cut(s) | 161, 167, 311, 572, 1010 |
| BciT130I | CCWGG | 1 cut(s) | 953 |
| BcoDI | GTCTC | 2 cut(s) | 726, 1488 |
| BfaI | CTAG | 3 cut(s) | 914, 1544, 1616 |
| BfuAI | ACCTGC | 1 cut(s) | 1288 |
| BglII | AGATCT | 1 cut(s) | 958 |
| BisI | GCNGC | 3 cut(s) | 497, 1593, 1720 |
| BlsI | GCNGC | 3 cut(s) | 498, 1594, 1721 |
| Bme1390I | CCNGG | 1 cut(s) | 953 |
| Bme18I | GGWCC | 2 cut(s) | 815, 949 |
| BmgT120I | GGNCC | 2 cut(s) | 815, 949 |
| BmiI | GGNNCC | 4 cut(s) | 1155, 1186, 1626, 1672 |
| BmrFI | CCNGG | 1 cut(s) | 953 |
| BmrI | ACTGGG | 1 cut(s) | 1290 |
| BmsI | GCATC | 8 cut(s) | 508, 754, 961, 1030, 1300, 1353, 1644, 1692 |
| BmuI | ACTGGG | 1 cut(s) | 1290 |
| BpiI | GAAGAC | 3 cut(s) | 357, 1124, 1454 |
| BpmI | CTGGAG | 1 cut(s) | 328 |
| Bpu10I | CCTNAGC | 1 cut(s) | 423 |
| Bpu14I | TTCGAA | 1 cut(s) | 658 |
| Bsa29I | ATCGAT | 1 cut(s) | 1347 |
| BsaHI | GRCGYC | 1 cut(s) | 625 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1417, 1537 |
| Bse1I | ACTGG | 6 cut(s) | 91, 363, 595, 1296, 1681, 1820 |
| Bse3DI | GCAATG | 1 cut(s) | 1451 |
| BseBI | CCWGG | 1 cut(s) | 953 |
| BseCI | ATCGAT | 1 cut(s) | 1347 |
| BseGI | GGATG | 4 cut(s) | 583, 769, 1291, 1469 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1417, 1537 |
| BseMI | GCAATG | 1 cut(s) | 1451 |
| BseMII | CTCAG | 2 cut(s) | 375, 414 |
| BseNI | ACTGG | 6 cut(s) | 91, 363, 595, 1296, 1681, 1820 |
| BseRI | GAGGAG | 2 cut(s) | 685, 1634 |
| BseSI | GKGCMC | 1 cut(s) | 1279 |
| BseXI | GCAGC | 3 cut(s) | 508, 1579, 1731 |
| BseYI | CCCAGC | 1 cut(s) | 1595 |
| BsgI | GTGCAG | 1 cut(s) | 256 |
| BshFI | GGCC | 1 cut(s) | 1518 |
| BshNI | GGYRCC | 3 cut(s) | 1153, 1184, 1624 |
| BshVI | ATCGAT | 1 cut(s) | 1347 |
| BsiHKAI | GWGCWC | 2 cut(s) | 344, 1279 |
| BslFI | GGGAC | 3 cut(s) | 572, 1197, 1284 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1417, 1537 |
| BsmAI | GTCTC | 2 cut(s) | 726, 1488 |
| BsmBI | CGTCTC | 1 cut(s) | 1488 |
| BsmFI | GGGAC | 3 cut(s) | 572, 1197, 1284 |
| BsmI | GAATGC | 1 cut(s) | 1204 |
| BsnI | GGCC | 1 cut(s) | 1518 |
| Bsp119I | TTCGAA | 1 cut(s) | 658 |
| Bsp1286I | GDGCHC | 2 cut(s) | 344, 1279 |
| Bsp1407I | TGTACA | 2 cut(s) | 1219, 1789 |
| Bsp143I | GATC | 5 cut(s) | 850, 958, 1348, 1540, 1549 |
| BspACI | CCGC | 3 cut(s) | 882, 1259, 1524 |
| BspANI | GGCC | 1 cut(s) | 1518 |
| BspCNI | CTCAG | 2 cut(s) | 376, 415 |
| BspDI | ATCGAT | 1 cut(s) | 1347 |
| BspLI | GGNNCC | 4 cut(s) | 1155, 1186, 1626, 1672 |
| BspMI | ACCTGC | 1 cut(s) | 1288 |
| BspPI | GGATC | 3 cut(s) | 845, 1548, 1557 |
| BspT104I | TTCGAA | 1 cut(s) | 658 |
| BspT107I | GGYRCC | 3 cut(s) | 1153, 1184, 1624 |
| BsrBI | CCGCTC | 1 cut(s) | 1524 |
| BsrDI | GCAATG | 1 cut(s) | 1451 |
| BsrGI | TGTACA | 2 cut(s) | 1219, 1789 |
| BsrI | ACTGG | 6 cut(s) | 91, 363, 595, 1296, 1681, 1820 |
| BssMI | GATC | 5 cut(s) | 850, 958, 1348, 1540, 1549 |
| BssNI | GRCGYC | 1 cut(s) | 625 |
| BssSI | CACGAG | 1 cut(s) | 1769 |
| Bst2BI | CACGAG | 1 cut(s) | 1769 |
| Bst2UI | CCWGG | 1 cut(s) | 953 |
| Bst4CI | ACNGT | 3 cut(s) | 200, 553, 563 |
| Bst6I | CTCTTC | 3 cut(s) | 675, 708, 1098 |
| BstACI | GRCGYC | 1 cut(s) | 625 |
| BstAUI | TGTACA | 2 cut(s) | 1219, 1789 |
| BstBI | TTCGAA | 1 cut(s) | 658 |
| BstC8I | GCNNGC | 3 cut(s) | 306, 690, 1717 |
| BstDEI | CTNAG | 3 cut(s) | 384, 423, 1378 |
| BstEII | GGTNACC | 2 cut(s) | 1081, 1526 |
| BstF5I | GGATG | 4 cut(s) | 583, 769, 1291, 1469 |
| BstKTI | GATC | 5 cut(s) | 853, 961, 1351, 1543, 1552 |
| BstMAI | GTCTC | 2 cut(s) | 726, 1488 |
| BstMBI | GATC | 5 cut(s) | 850, 958, 1348, 1540, 1549 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 600, 1040, 1097, 1453 |
| BstNI | CCWGG | 1 cut(s) | 953 |
| BstNSI | RCATGY | 4 cut(s) | 63, 308, 644, 1226 |
| BstPI | GGTNACC | 2 cut(s) | 1081, 1526 |
| BstSCI | CCNGG | 1 cut(s) | 951 |
| BstSLI | GKGCMC | 1 cut(s) | 1279 |
| BstV1I | GCAGC | 3 cut(s) | 508, 1579, 1731 |
| BstV2I | GAAGAC | 3 cut(s) | 357, 1124, 1454 |
| BstX2I | RGATCY | 4 cut(s) | 850, 958, 1540, 1549 |
| BstYI | RGATCY | 4 cut(s) | 850, 958, 1540, 1549 |
| Bsu15I | ATCGAT | 1 cut(s) | 1347 |
| BsuRI | GGCC | 1 cut(s) | 1518 |
| BsuTUI | ATCGAT | 1 cut(s) | 1347 |
| BtsCI | GGATG | 4 cut(s) | 583, 769, 1291, 1469 |
| BtsI | GCAGTG | 2 cut(s) | 807, 1086 |
| BtsIMutI | CAGTG | 3 cut(s) | 807, 1086, 1827 |
| BveI | ACCTGC | 1 cut(s) | 1288 |
| Cac8I | GCNNGC | 3 cut(s) | 306, 690, 1717 |
| CaiI | CAGNNNCTG | 2 cut(s) | 952, 1595 |
| Cfr13I | GGNCC | 2 cut(s) | 815, 949 |
| ClaI | ATCGAT | 1 cut(s) | 1347 |
| CseI | GACGC | 1 cut(s) | 614 |
| Csp6I | GTAC | 5 cut(s) | 296, 840, 1220, 1625, 1790 |
| CviQI | GTAC | 5 cut(s) | 296, 840, 1220, 1625, 1790 |
| DdeI | CTNAG | 3 cut(s) | 384, 423, 1378 |
| DpnI | GATC | 5 cut(s) | 852, 960, 1350, 1542, 1551 |
| DpnII | GATC | 5 cut(s) | 850, 958, 1348, 1540, 1549 |
| EaeI | YGGCCR | 1 cut(s) | 1516 |
| Eam1104I | CTCTTC | 3 cut(s) | 675, 708, 1098 |
| EarI | CTCTTC | 3 cut(s) | 675, 708, 1098 |
| Ecl136II | GAGCTC | 1 cut(s) | 342 |
| Eco24I | GRGCYC | 1 cut(s) | 344 |
| Eco47I | GGWCC | 2 cut(s) | 815, 949 |
| Eco53kI | GAGCTC | 1 cut(s) | 342 |
| Eco57I | CTGAAG | 2 cut(s) | 1122, 1598 |
| Eco91I | GGTNACC | 2 cut(s) | 1081, 1526 |
| EcoICRI | GAGCTC | 1 cut(s) | 342 |
| EcoO109I | RGGNCCY | 1 cut(s) | 949 |
| EcoO65I | GGTNACC | 2 cut(s) | 1081, 1526 |
| EcoRI | GAATTC | 1 cut(s) | 1069 |
| EcoRII | CCWGG | 1 cut(s) | 951 |
| EcoT38I | GRGCYC | 1 cut(s) | 344 |
| Esp3I | CGTCTC | 1 cut(s) | 1488 |
| FaqI | GGGAC | 3 cut(s) | 572, 1197, 1284 |
| FauI | CCCGC | 1 cut(s) | 889 |
| Fnu4HI | GCNGC | 3 cut(s) | 497, 1593, 1720 |
| FokI | GGATG | 4 cut(s) | 590, 776, 1278, 1456 |
| FriOI | GRGCYC | 1 cut(s) | 344 |
| Fsp4HI | GCNGC | 3 cut(s) | 497, 1593, 1720 |
| FspBI | CTAG | 3 cut(s) | 914, 1544, 1616 |
| GluI | GCNGC | 3 cut(s) | 497, 1593, 1720 |
| GsaI | CCCAGC | 1 cut(s) | 1599 |
| GsuI | CTGGAG | 1 cut(s) | 328 |
| HaeIII | GGCC | 1 cut(s) | 1518 |
| HgaI | GACGC | 1 cut(s) | 614 |
| Hin1I | GRCGYC | 1 cut(s) | 625 |
| HindIII | AAGCTT | 1 cut(s) | 283 |
| HinfI | GANTC | 8 cut(s) | 131, 485, 648, 683, 719, 929, 1604, 1799 |
| HphI | GGTGA | 5 cut(s) | 182, 191, 506, 1078, 1538 |
| Hpy166II | GTNNAC | 1 cut(s) | 1277 |
| Hpy188III | TCNNGA | 4 cut(s) | 191, 617, 914, 1544 |
| Hpy8I | GTNNAC | 1 cut(s) | 1277 |
| Hpy99I | CGWCG | 1 cut(s) | 630 |
| HpyAV | CCTTC | 6 cut(s) | 145, 321, 475, 728, 909, 1483 |
| HpyCH4III | ACNGT | 3 cut(s) | 200, 553, 563 |
| HpyCH4IV | ACGT | 1 cut(s) | 1846 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 600, 1040, 1097, 1453 |
| HpyF3I | CTNAG | 3 cut(s) | 384, 423, 1378 |
| HpySE526I | ACGT | 1 cut(s) | 1846 |
| Hsp92I | GRCGYC | 1 cut(s) | 625 |
| KpnI | GGTACC | 1 cut(s) | 1628 |
| Kzo9I | GATC | 5 cut(s) | 850, 958, 1348, 1540, 1549 |
| LmnI | GCTCC | 2 cut(s) | 347, 697 |
| Lsp1109I | GCAGC | 3 cut(s) | 508, 1579, 1731 |
| LweI | GCATC | 8 cut(s) | 508, 754, 961, 1030, 1300, 1353, 1644, 1692 |
| MaeI | CTAG | 3 cut(s) | 914, 1544, 1616 |
| MaeII | ACGT | 1 cut(s) | 1846 |
| MaeIII | GTNAC | 5 cut(s) | 62, 452, 1081, 1424, 1526 |
| MalI | GATC | 5 cut(s) | 852, 960, 1350, 1542, 1551 |
| MbiI | CCGCTC | 1 cut(s) | 1524 |
| MboI | GATC | 5 cut(s) | 850, 958, 1348, 1540, 1549 |
| MfeI | CAATTG | 1 cut(s) | 1335 |
| MflI | RGATCY | 4 cut(s) | 850, 958, 1540, 1549 |
| MhlI | GDGCHC | 2 cut(s) | 344, 1279 |
| MlsI | TGGCCA | 1 cut(s) | 1518 |
| MluNI | TGGCCA | 1 cut(s) | 1518 |
| MlyI | GAGTC | 3 cut(s) | 140, 692, 728 |
| MmeI | TCCRAC | 2 cut(s) | 719, 749 |
| Mox20I | TGGCCA | 1 cut(s) | 1518 |
| MscI | TGGCCA | 1 cut(s) | 1518 |
| MseI | TTAA | 4 cut(s) | 147, 573, 830, 978 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1221, 1433 |
| Msp20I | TGGCCA | 1 cut(s) | 1518 |
| MspA1I | CMGCKG | 1 cut(s) | 1592 |
| MspR9I | CCNGG | 1 cut(s) | 953 |
| MunI | CAATTG | 1 cut(s) | 1335 |
| Mva1269I | GAATGC | 1 cut(s) | 1204 |
| MvaI | CCWGG | 1 cut(s) | 953 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 600, 1040, 1097, 1453 |
| NdeII | GATC | 5 cut(s) | 850, 958, 1348, 1540, 1549 |
| NlaIV | GGNNCC | 4 cut(s) | 1155, 1186, 1626, 1672 |
| NmeAIII | GCCGAG | 1 cut(s) | 502 |
| NmuCI | GTSAC | 4 cut(s) | 62, 452, 1424, 1526 |
| NspI | RCATGY | 4 cut(s) | 63, 308, 644, 1226 |
| NspV | TTCGAA | 1 cut(s) | 658 |
| PaeI | GCATGC | 1 cut(s) | 308 |
| PaqCI | CACCTGC | 1 cut(s) | 1288 |
| PctI | GAATGC | 1 cut(s) | 1204 |
| PfeI | GAWTC | 5 cut(s) | 485, 648, 929, 1604, 1799 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1537 |
| PkrI | GCNGC | 3 cut(s) | 498, 1594, 1721 |
| PleI | GAGTC | 3 cut(s) | 139, 691, 727 |
| PpsI | GAGTC | 3 cut(s) | 139, 691, 727 |
| PpuMI | RGGWCCY | 1 cut(s) | 949 |
| PshBI | ATTAAT | 1 cut(s) | 978 |
| PsiI | TTATAA | 1 cut(s) | 32 |
| Psp124BI | GAGCTC | 1 cut(s) | 344 |
| Psp5II | RGGWCCY | 1 cut(s) | 949 |
| Psp6I | CCWGG | 1 cut(s) | 951 |
| PspEI | GGTNACC | 2 cut(s) | 1081, 1526 |
| PspFI | CCCAGC | 1 cut(s) | 1595 |
| PspGI | CCWGG | 1 cut(s) | 951 |
| PspN4I | GGNNCC | 4 cut(s) | 1155, 1186, 1626, 1672 |
| PspPI | GGNCC | 2 cut(s) | 815, 949 |
| PspPPI | RGGWCCY | 1 cut(s) | 949 |
| PstNI | CAGNNNCTG | 2 cut(s) | 952, 1595 |
| PsuI | RGATCY | 4 cut(s) | 850, 958, 1540, 1549 |
| PvuII | CAGCTG | 1 cut(s) | 1592 |
| RsaI | GTAC | 5 cut(s) | 297, 841, 1221, 1626, 1791 |
| RsaNI | GTAC | 5 cut(s) | 296, 840, 1220, 1625, 1790 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1221, 1433 |
| SacI | GAGCTC | 1 cut(s) | 344 |
| SaqAI | TTAA | 4 cut(s) | 147, 573, 830, 978 |
| SatI | GCNGC | 3 cut(s) | 497, 1593, 1720 |
| Sau3AI | GATC | 5 cut(s) | 850, 958, 1348, 1540, 1549 |
| Sau96I | GGNCC | 2 cut(s) | 815, 949 |
| SchI | GAGTC | 3 cut(s) | 140, 692, 728 |
| ScrFI | CCNGG | 1 cut(s) | 953 |
| SduI | GDGCHC | 2 cut(s) | 344, 1279 |
| SfaNI | GCATC | 8 cut(s) | 508, 754, 961, 1030, 1300, 1353, 1644, 1692 |
| SfuI | TTCGAA | 1 cut(s) | 658 |
| SinI | GGWCC | 2 cut(s) | 815, 949 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1221, 1433 |
| SphI | GCATGC | 1 cut(s) | 308 |
| SsiI | CCGC | 3 cut(s) | 882, 1259, 1524 |
| SspI | AATATT | 2 cut(s) | 272, 865 |
| SspMI | CTAG | 3 cut(s) | 914, 1544, 1616 |
| SstI | GAGCTC | 1 cut(s) | 344 |
| StyD4I | CCNGG | 1 cut(s) | 951 |
| TaaI | ACNGT | 3 cut(s) | 200, 553, 563 |
| TaiI | ACGT | 1 cut(s) | 1849 |
| TaqI | TCGA | 5 cut(s) | 548, 658, 798, 1311, 1347 |
| TatI | WGTACW | 2 cut(s) | 1219, 1789 |
| TfiI | GAWTC | 5 cut(s) | 485, 648, 929, 1604, 1799 |
| Tru1I | TTAA | 4 cut(s) | 147, 573, 830, 978 |
| Tru9I | TTAA | 4 cut(s) | 147, 573, 830, 978 |
| TscAI | CASTG | 3 cut(s) | 814, 1093, 1827 |
| TseFI | GTSAC | 4 cut(s) | 62, 452, 1424, 1526 |
| TseI | GCWGC | 3 cut(s) | 496, 1592, 1719 |
| Tsp45I | GTSAC | 4 cut(s) | 62, 452, 1424, 1526 |
| TspDTI | ATGAA | 6 cut(s) | 477, 935, 996, 1182, 1419, 1578 |
| TspRI | CASTG | 3 cut(s) | 814, 1093, 1827 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1537 |
| VneI | GTGCAC | 1 cut(s) | 1275 |
| VpaK11BI | GGWCC | 2 cut(s) | 815, 949 |
| VspI | ATTAAT | 1 cut(s) | 978 |
| XapI | RAATTY | 2 cut(s) | 1069, 1836 |
| XbaI | TCTAGA | 2 cut(s) | 913, 1543 |
| XceI | RCATGY | 4 cut(s) | 63, 308, 644, 1226 |
| XspI | CTAG | 3 cut(s) | 914, 1544, 1616 |