FvH4_2g14670

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013267
Physical Location & Seq
Forward (+)
12872283 .. 12873413
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14670.t1

Sequence Viewer

Length: 903 bp
ATGAATTCCTACCATTTTAGCACGAAATGCGTAGTACAAATAGCAATTCATGCCTACCACTTTCTCCACAACAAACAATCTTCCTATCTACCTCATCAAAACACATTTGCAACAATGGCCGTTCCAAATTACTACTTCCCATATGTCCCTCCACCACCTCCAGCTGTAAAGCCGCCAAGTCACCCAGCGCCGCCACCACCGACAGCAAAGCCGCCAACTCACCCAGCGCCACCACCACCAGCAGCTAAGCCGCCTAGTCACTCAACCCCACCACCTCCGTCAGCAAAGCCACCAAGTCACTCAACCCCACCACCCCCACCACATAAGCCATTTAGCCCACCGCCTCCTCATGTACACCCTCCGCCAGCACTGCCACCCCATGCAGGCCCACCACCACCGCCATTGCCACCTTCTCCATCCCCGAATCACCCGACTGTCATAGTCATTGTATTCATCTCATTTGGTTCTGTTTTCTTCCTTGCATTTCTTGCAATTGCTCTGTGTTGTTTCCTCAAGAAAAAGAAGAAGAAGACTATCCAAGAAACCGAAGTCATTCATTTCGACGAACACAGGAAGATCAAGGAGGCCATAGTGGAAGGTCCCCATGGACCACAAGCTGTGGTACTATCAGTTGAGGATGATGTTCATATAGATGAGGCGATCAGGAAAGATGAGACATCTGAAAAGAGATGGCCATATTCTTCGAGTTCAAATGTCCAAGAAACTGATATTATTCATGTCGATGGACATGAGAAGGTGAAAGAAGACATTGTAGAAGGTCCTCATGGATCAAAAGCTGTGCTGTTGACAATTGATGATGATATCCATGTCGATGAGGAGATCAGGAAGAACGAAAGATCTGGTAAAGATGGTCATCACCATTTGCACCAGGCTGGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

32.92

Weight (kDa)

6.96

Isoelectric Point (pI)

63.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43790
fragaria_vesca FvH4_2g14670
malus_domestica MD05G1014900.v1.1 MD10G1014900.v1.1
prunus_persica Prupe.8G018800_v2.0.a1
pyrus_communis pycom05g00820 pycom10g00920
rosa_chinensis RchiOBHm_Chr6g0277141
rosa_laevigata RLG00000013328
rosa_multiflora Rmu_sc0003539.1_g000022 Rmu_sc0006244.1_g000041
rosa_roxburghii Rroxscaffold_7G00191570
rosa_rugosa Rorug06G0106500
rosa_samantha Rh6AG217300 Rh6BG221300 Rh6CG224200 Rh6DG213900
rosa_wichuraiana Rw6G018970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 173, 191, 212, 251, 341, 362, 398
AclWI GGATC 1 cut(s) 796
AcoI YGGCCR 2 cut(s) 117, 692
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 3 cut(s) 36, 354, 624
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 1 cut(s) 711
AjnI CCWGG 1 cut(s) 888
AluBI AGCT 4 cut(s) 164, 245, 617, 797
AluI AGCT 4 cut(s) 164, 245, 617, 797
Alw26I GTCTC 1 cut(s) 668
AlwI GGATC 1 cut(s) 796
AoxI GGCC 4 cut(s) 117, 385, 585, 692
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 552
AspLEI GCGC 2 cut(s) 190, 229
AspS9I GGNCC 4 cut(s) 386, 599, 608, 779
AsuHPI GGTGA 5 cut(s) 173, 212, 419, 769, 869
AvaII GGWCC 3 cut(s) 599, 608, 779
BalI TGGCCA 1 cut(s) 694
BbsI GAAGAC 2 cut(s) 536, 771
BbvI GCAGC 1 cut(s) 254
BccI CCATC 4 cut(s) 424, 684, 737, 863
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 890
BcoDI GTCTC 1 cut(s) 668
BfaI CTAG 1 cut(s) 255
BfoI RGCGCY 2 cut(s) 191, 230
BglII AGATCT 1 cut(s) 857
BisI GCNGC 5 cut(s) 173, 191, 212, 243, 251
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 5 cut(s) 174, 192, 213, 244, 252
Bme1390I CCNGG 1 cut(s) 890
Bme18I GGWCC 3 cut(s) 599, 608, 779
BmgT120I GGNCC 4 cut(s) 386, 599, 608, 779
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 1 cut(s) 890
BpiI GAAGAC 2 cut(s) 536, 771
BpmI CTGGAG 1 cut(s) 144
Bpu1102I GCTNAGC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 497
BsaBI GATNNNNATC 1 cut(s) 873
BsaJI CCNNGG 1 cut(s) 604
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse3DI GCAATG 1 cut(s) 401
Bse8I GATNNNNATC 1 cut(s) 873
BseBI CCWGG 1 cut(s) 890
BseDI CCNNGG 1 cut(s) 604
BseGI GGATG 2 cut(s) 416, 643
BseJI GATNNNNATC 1 cut(s) 873
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMI GCAATG 1 cut(s) 401
BseRI GAGGAG 2 cut(s) 336, 851
BseXI GCAGC 1 cut(s) 254
BseYI CCCAGC 2 cut(s) 184, 223
BshFI GGCC 4 cut(s) 119, 387, 587, 694
BslFI GGGAC 2 cut(s) 131, 585
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 668
BsmFI GGGAC 2 cut(s) 131, 585
BsnI GGCC 4 cut(s) 119, 387, 587, 694
Bsp1407I TGTACA 1 cut(s) 352
Bsp143I GATC 5 cut(s) 576, 660, 788, 840, 857
Bsp1720I GCTNAGC 1 cut(s) 246
Bsp19I CCATGG 1 cut(s) 604
BspACI CCGC 7 cut(s) 173, 191, 212, 251, 341, 362, 398
BspANI GGCC 4 cut(s) 119, 387, 587, 694
BspLI GGNNCC 1 cut(s) 601
BspPI GGATC 1 cut(s) 796
BsrDI GCAATG 1 cut(s) 401
BsrGI TGTACA 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 5 cut(s) 576, 660, 788, 840, 857
BssT1I CCWWGG 1 cut(s) 604
Bst2UI CCWGG 1 cut(s) 890
Bst4CI ACNGT 1 cut(s) 436
BstAPI GCANNNNNTGC 3 cut(s) 27, 50, 488
BstAUI TGTACA 1 cut(s) 352
BstC8I GCNNGC 2 cut(s) 366, 385
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 604
BstF5I GGATG 2 cut(s) 416, 643
BstH2I RGCGCY 2 cut(s) 191, 230
BstHHI GCGC 2 cut(s) 190, 229
BstKTI GATC 5 cut(s) 579, 663, 791, 843, 860
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 5 cut(s) 576, 660, 788, 840, 857
BstMWI GCNNNNNNNGC 5 cut(s) 27, 50, 116, 370, 488
BstNI CCWGG 1 cut(s) 890
BstSCI CCNGG 1 cut(s) 888
BstV1I GCAGC 1 cut(s) 254
BstV2I GAAGAC 2 cut(s) 536, 771
BstX2I RGATCY 1 cut(s) 857
BstYI RGATCY 1 cut(s) 857
BsuRI GGCC 4 cut(s) 119, 387, 587, 694
BtgI CCRYGG 1 cut(s) 604
BtsCI GGATG 2 cut(s) 416, 643
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 368
Cac8I GCNNGC 2 cut(s) 366, 385
CfoI GCGC 2 cut(s) 190, 229
Cfr13I GGNCC 4 cut(s) 386, 599, 608, 779
Csp6I GTAC 3 cut(s) 35, 353, 623
CspCI CAANNNNNGTGG 2 cut(s) 384, 419
CviAII CATG 8 cut(s) 50, 350, 380, 605, 737, 749, 785, 827
CviQI GTAC 3 cut(s) 35, 353, 623
DdeI CTNAG 1 cut(s) 246
DpnI GATC 5 cut(s) 578, 662, 790, 842, 859
DpnII GATC 5 cut(s) 576, 660, 788, 840, 857
EaeI YGGCCR 2 cut(s) 117, 692
EciI GGCGGA 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 604
Eco32I GATATC 1 cut(s) 823
Eco47I GGWCC 3 cut(s) 599, 608, 779
EcoO109I RGGNCCY 2 cut(s) 599, 779
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 888
EcoRV GATATC 1 cut(s) 823
EcoT14I CCWWGG 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 604
FaeI CATG 8 cut(s) 53, 353, 383, 608, 740, 752, 788, 830
FaqI GGGAC 2 cut(s) 131, 585
FatI CATG 8 cut(s) 49, 349, 379, 604, 736, 748, 784, 826
FauNDI CATATG 1 cut(s) 142
Fnu4HI GCNGC 5 cut(s) 173, 191, 212, 243, 251
FokI GGATG 2 cut(s) 403, 650
Fsp4HI GCNGC 5 cut(s) 173, 191, 212, 243, 251
FspBI CTAG 1 cut(s) 255
GlaI GCGC 2 cut(s) 189, 228
GluI GCNGC 5 cut(s) 173, 191, 212, 243, 251
GsaI CCCAGC 2 cut(s) 188, 227
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 2 cut(s) 191, 230
HaeIII GGCC 4 cut(s) 119, 387, 587, 694
HhaI GCGC 2 cut(s) 190, 229
Hin1II CATG 8 cut(s) 53, 353, 383, 608, 740, 752, 788, 830
Hin6I GCGC 2 cut(s) 188, 227
HinP1I GCGC 2 cut(s) 188, 227
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HinfI GANTC 1 cut(s) 424
HphI GGTGA 5 cut(s) 173, 212, 419, 769, 869
Hpy166II GTNNAC 2 cut(s) 355, 807
Hpy188I TCNGA 1 cut(s) 682
Hpy188III TCNNGA 3 cut(s) 514, 664, 844
Hpy8I GTNNAC 2 cut(s) 355, 807
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 4 cut(s) 420, 590, 748, 770
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4V TGCA 5 cut(s) 110, 383, 482, 491, 886
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 50, 116, 370, 488
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 8 cut(s) 53, 353, 383, 608, 740, 752, 788, 830
HspAI GCGC 2 cut(s) 188, 227
Kzo9I GATC 5 cut(s) 576, 660, 788, 840, 857
Lsp1109I GCAGC 1 cut(s) 254
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 3 cut(s) 179, 257, 296
MalI GATC 5 cut(s) 578, 662, 790, 842, 859
MboI GATC 5 cut(s) 576, 660, 788, 840, 857
MboII GAAGA 9 cut(s) 72, 466, 535, 538, 541, 586, 693, 776, 859
MfeI CAATTG 2 cut(s) 492, 810
MflI RGATCY 1 cut(s) 857
MlsI TGGCCA 1 cut(s) 694
MluCI AATT 5 cut(s) 4, 45, 127, 492, 810
MluNI TGGCCA 1 cut(s) 694
Mox20I TGGCCA 1 cut(s) 694
MroXI GAANNNNTTC 1 cut(s) 552
MscI TGGCCA 1 cut(s) 694
MslI CAYNNNNRTG 3 cut(s) 651, 741, 831
Msp20I TGGCCA 1 cut(s) 694
MspA1I CMGCKG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 890
MunI CAATTG 2 cut(s) 492, 810
MvaI CCWGG 1 cut(s) 890
MwoI GCNNNNNNNGC 5 cut(s) 27, 50, 116, 370, 488
NcoI CCATGG 1 cut(s) 604
NdeI CATATG 1 cut(s) 142
NdeII GATC 5 cut(s) 576, 660, 788, 840, 857
NlaIII CATG 8 cut(s) 53, 353, 383, 608, 740, 752, 788, 830
NlaIV GGNNCC 1 cut(s) 601
NmuCI GTSAC 3 cut(s) 179, 257, 296
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 1 cut(s) 424
PkrI GCNGC 5 cut(s) 174, 192, 213, 244, 252
PpuMI RGGWCCY 2 cut(s) 599, 779
Psp5II RGGWCCY 2 cut(s) 599, 779
Psp6I CCWGG 1 cut(s) 888
PspFI CCCAGC 2 cut(s) 184, 223
PspGI CCWGG 1 cut(s) 888
PspN4I GGNNCC 1 cut(s) 601
PspPI GGNCC 4 cut(s) 386, 599, 608, 779
PspPPI RGGWCCY 2 cut(s) 599, 779
PsuI RGATCY 1 cut(s) 857
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 3 cut(s) 36, 354, 624
RsaNI GTAC 3 cut(s) 35, 353, 623
RseI CAYNNNNRTG 3 cut(s) 651, 741, 831
SatI GCNGC 5 cut(s) 173, 191, 212, 243, 251
Sau3AI GATC 5 cut(s) 576, 660, 788, 840, 857
Sau96I GGNCC 4 cut(s) 386, 599, 608, 779
ScrFI CCNGG 1 cut(s) 890
SinI GGWCC 3 cut(s) 599, 608, 779
SmiMI CAYNNNNRTG 3 cut(s) 651, 741, 831
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 5 cut(s) 4, 45, 127, 492, 810
SsiI CCGC 7 cut(s) 173, 191, 212, 251, 341, 362, 398
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 1 cut(s) 436
TaqI TCGA 4 cut(s) 561, 704, 741, 831
TasI AATT 5 cut(s) 4, 45, 127, 492, 810
TatI WGTACW 2 cut(s) 34, 352
TauI GCSGC 4 cut(s) 175, 193, 214, 253
TfiI GAWTC 1 cut(s) 424
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 3 cut(s) 179, 257, 296
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 3 cut(s) 179, 257, 296
TspDTI ATGAA 6 cut(s) 17, 38, 442, 545, 635, 725
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 375
VpaK11BI GGWCC 3 cut(s) 599, 608, 779
XapI RAATTY 1 cut(s) 4
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.