Rh6AG217300

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013267
Physical Location & Seq
Forward (+)
38921009 .. 38922096
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG217300.1

Sequence Viewer

Length: 918 bp
ATGGCCATTCGGTTCCCATATTTCCCTCCACCACCTCCAGCTGTAAAGCCGCCAAGTCACCCAGCGCCGCCACCACCGGCAGCAAAGCCGCCGAGTCACTCAGCCCCGCCACCACCAGCAGTAAAGCCACCAAGTCACTCAGCCCCACCACCACCAGCAGCAAAGCCGCCAAGTCACTCAGCCCCGCCACCACCGGCAGCAAAGCCCCCAAGCCACTCAACCCCACCACCTCCGGCAGCTAAGCCACCAAGCCCCTCAACCCCACCACCGCCATCCCCAGCAGCTAAGCCACCAAGCCCCTCAACTCCACCACCACCAAGTCACTCGACCCCACCACCACCACATCAGCCATTTAGCCCACCGCCACCTCATGTACACCCACCACCAGCACTGCCACCCCATGTAGCCCCACCATTGCCACCTTCTCCATCGCCGAATCACCCCACCGTCATAATCATTATATTCATCTCATTTGGTTCTGTTTTCTTCCTTGCATTTCTTGCAATTGCTCTATGTTGTTTCATCAAGAAAAAGAAGAAGAAGAGTACTATCCAAGAAACCAAGGTCATTCATTTCGACGAACATAGGAAGATCAAGGAGGCCATAGTAGAAGGTCCCCATGGACCACAAGCTGTGGTACTATCAGTTGAGGATGACGTTCATATAGATGAGGCGATCAAGAAAAATGAAAAATCTGATAAGAGATGGCCTTCTTCGAGTTCAAATGTCCAAGAAACTGATTTTATTCATGTTGATGAACATGAGAAGGTGAAAGAAGGCATTGTAGAAGGTCCTCATGGATCAAAAGCTATGCTGTTGACAATTGACGATGATATTCATGTCGATGAGGAGATATGCAAGAACGAGAGATCTGGTAAAGATGGTCATCACCATCTGGTACACAAGGCCGGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

32.45

Weight (kDa)

8.65

Isoelectric Point (pI)

73.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43790
fragaria_vesca FvH4_2g14670
malus_domestica MD05G1014900.v1.1 MD10G1014900.v1.1
prunus_persica Prupe.8G018800_v2.0.a1
pyrus_communis pycom05g00820 pycom10g00920
rosa_chinensis RchiOBHm_Chr6g0277141
rosa_laevigata RLG00000013328
rosa_multiflora Rmu_sc0003539.1_g000022 Rmu_sc0006244.1_g000041
rosa_roxburghii Rroxscaffold_7G00191570
rosa_rugosa Rorug06G0106500
rosa_samantha Rh6AG217300 Rh6BG221300 Rh6CG224200 Rh6DG213900
rosa_wichuraiana Rw6G018970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 50, 68, 89, 107, 167, 185, 269, 362
AclWI GGATC 1 cut(s) 808
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 4 cut(s) 375, 547, 639, 900
AgsI TTSAA 1 cut(s) 723
AluBI AGCT 5 cut(s) 41, 239, 284, 632, 809
AluI AGCT 5 cut(s) 41, 239, 284, 632, 809
AlwI GGATC 1 cut(s) 808
AoxI GGCC 4 cut(s) 3, 600, 707, 906
ApeKI GCWGC 5 cut(s) 80, 158, 197, 236, 281
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 3 cut(s) 614, 623, 791
AsuHPI GGTGA 4 cut(s) 50, 431, 781, 881
AvaII GGWCC 3 cut(s) 614, 623, 791
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 5 cut(s) 92, 170, 209, 248, 293
BccI CCATC 5 cut(s) 280, 436, 699, 875, 900
BfoI RGCGCY 1 cut(s) 68
BglII AGATCT 1 cut(s) 869
BisI GCNGC 9 cut(s) 50, 68, 81, 89, 159, 167, 198, 237, 282
BlpI GCTNAGC 2 cut(s) 240, 285
BlsI GCNGC 9 cut(s) 51, 69, 82, 90, 160, 168, 199, 238, 283
BmcAI AGTACT 1 cut(s) 547
Bme18I GGWCC 3 cut(s) 614, 623, 791
BmgT120I GGNCC 3 cut(s) 614, 623, 791
BmiI GGNNCC 2 cut(s) 14, 616
BpmI CTGGAG 1 cut(s) 21
Bpu1102I GCTNAGC 2 cut(s) 240, 285
BsaBI GATNNNNATC 1 cut(s) 885
BsaJI CCNNGG 2 cut(s) 561, 619
Bse118I RCCGGY 3 cut(s) 76, 193, 908
Bse3DI GCAATG 1 cut(s) 413
Bse8I GATNNNNATC 1 cut(s) 885
BseDI CCNNGG 2 cut(s) 561, 619
BseGI GGATG 2 cut(s) 272, 658
BseJI GATNNNNATC 1 cut(s) 885
BseMI GCAATG 1 cut(s) 413
BseMII CTCAG 3 cut(s) 114, 153, 192
BseRI GAGGAG 1 cut(s) 863
BseXI GCAGC 5 cut(s) 92, 170, 209, 248, 293
BseYI CCCAGC 2 cut(s) 61, 277
BshFI GGCC 4 cut(s) 5, 602, 709, 908
BsiSI CCGG 4 cut(s) 77, 194, 233, 909
BslFI GGGAC 1 cut(s) 600
BsmFI GGGAC 1 cut(s) 600
BsnI GGCC 4 cut(s) 5, 602, 709, 908
Bsp1407I TGTACA 1 cut(s) 373
Bsp143I GATC 4 cut(s) 591, 675, 800, 869
Bsp1720I GCTNAGC 2 cut(s) 240, 285
Bsp19I CCATGG 1 cut(s) 619
BspACI CCGC 8 cut(s) 50, 68, 89, 107, 167, 185, 269, 362
BspANI GGCC 4 cut(s) 5, 602, 709, 908
BspCNI CTCAG 3 cut(s) 113, 152, 191
BspLI GGNNCC 2 cut(s) 14, 616
BspPI GGATC 1 cut(s) 808
BsrDI GCAATG 1 cut(s) 413
BsrFI RCCGGY 3 cut(s) 76, 193, 908
BsrGI TGTACA 1 cut(s) 373
BssAI RCCGGY 3 cut(s) 76, 193, 908
BssECI CCNNGG 2 cut(s) 561, 619
BssMI GATC 4 cut(s) 591, 675, 800, 869
BssT1I CCWWGG 2 cut(s) 561, 619
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 1 cut(s) 536
BstAPI GCANNNNNTGC 1 cut(s) 500
BstAUI TGTACA 1 cut(s) 373
BstDEI CTNAG 5 cut(s) 100, 139, 178, 240, 285
BstDSI CCRYGG 1 cut(s) 619
BstF5I GGATG 2 cut(s) 272, 658
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 4 cut(s) 594, 678, 803, 872
BstMBI GATC 4 cut(s) 591, 675, 800, 869
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstV1I GCAGC 5 cut(s) 92, 170, 209, 248, 293
BstX2I RGATCY 1 cut(s) 869
BstYI RGATCY 1 cut(s) 869
BsuRI GGCC 4 cut(s) 5, 602, 709, 908
BtgI CCRYGG 1 cut(s) 619
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 272, 658
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 1 cut(s) 389
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 3 cut(s) 76, 193, 908
Cfr13I GGNCC 3 cut(s) 614, 623, 791
Csp6I GTAC 4 cut(s) 374, 546, 638, 899
CviAII CATG 7 cut(s) 371, 401, 620, 749, 761, 797, 839
CviQI GTAC 4 cut(s) 374, 546, 638, 899
DdeI CTNAG 5 cut(s) 100, 139, 178, 240, 285
DpnI GATC 4 cut(s) 593, 677, 802, 871
DpnII GATC 4 cut(s) 591, 675, 800, 869
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco130I CCWWGG 2 cut(s) 561, 619
Eco47I GGWCC 3 cut(s) 614, 623, 791
EcoO109I RGGNCCY 2 cut(s) 614, 791
EcoT14I CCWWGG 2 cut(s) 561, 619
ErhI CCWWGG 2 cut(s) 561, 619
FaeI CATG 7 cut(s) 374, 404, 623, 752, 764, 800, 842
FaqI GGGAC 1 cut(s) 600
FatI CATG 7 cut(s) 370, 400, 619, 748, 760, 796, 838
FauI CCCGC 2 cut(s) 114, 192
Fnu4HI GCNGC 9 cut(s) 50, 68, 81, 89, 159, 167, 198, 237, 282
FokI GGATG 2 cut(s) 259, 665
Fsp4HI GCNGC 9 cut(s) 50, 68, 81, 89, 159, 167, 198, 237, 282
GlaI GCGC 1 cut(s) 66
GluI GCNGC 9 cut(s) 50, 68, 81, 89, 159, 167, 198, 237, 282
GsaI CCCAGC 2 cut(s) 65, 281
GsuI CTGGAG 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 4 cut(s) 5, 602, 709, 908
HapII CCGG 4 cut(s) 77, 194, 233, 909
HhaI GCGC 1 cut(s) 67
Hin1II CATG 7 cut(s) 374, 404, 623, 752, 764, 800, 842
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 819
HindII GTYRAC 1 cut(s) 819
HinfI GANTC 2 cut(s) 94, 436
HpaII CCGG 4 cut(s) 77, 194, 233, 909
HphI GGTGA 4 cut(s) 50, 431, 781, 881
Hpy166II GTNNAC 3 cut(s) 376, 819, 901
Hpy188I TCNGA 1 cut(s) 697
Hpy188III TCNNGA 2 cut(s) 526, 679
Hpy8I GTNNAC 3 cut(s) 376, 819, 901
Hpy99I CGWCG 1 cut(s) 581
HpyAV CCTTC 6 cut(s) 432, 605, 720, 760, 770, 782
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 1 cut(s) 657
HpyCH4V TGCA 3 cut(s) 494, 503, 858
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 5 cut(s) 100, 139, 178, 240, 285
HpySE526I ACGT 1 cut(s) 657
Hsp92II CATG 7 cut(s) 374, 404, 623, 752, 764, 800, 842
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 4 cut(s) 591, 675, 800, 869
Lsp1109I GCAGC 5 cut(s) 92, 170, 209, 248, 293
MaeII ACGT 1 cut(s) 657
MaeIII GTNAC 5 cut(s) 56, 95, 134, 173, 320
MalI GATC 4 cut(s) 593, 677, 802, 871
MboI GATC 4 cut(s) 591, 675, 800, 869
MboII GAAGA 6 cut(s) 478, 547, 550, 553, 601, 705
MfeI CAATTG 2 cut(s) 504, 822
MflI RGATCY 1 cut(s) 869
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 504, 822
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 103
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 3 cut(s) 666, 753, 843
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 4 cut(s) 77, 194, 233, 909
MunI CAATTG 2 cut(s) 504, 822
MwoI GCNNNNNNNGC 1 cut(s) 500
NcoI CCATGG 1 cut(s) 619
NdeII GATC 4 cut(s) 591, 675, 800, 869
NlaIII CATG 7 cut(s) 374, 404, 623, 752, 764, 800, 842
NlaIV GGNNCC 2 cut(s) 14, 616
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 5 cut(s) 56, 95, 134, 173, 320
PfeI GAWTC 1 cut(s) 436
PkrI GCNGC 9 cut(s) 51, 69, 82, 90, 160, 168, 199, 238, 283
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PpuMI RGGWCCY 2 cut(s) 614, 791
Psp5II RGGWCCY 2 cut(s) 614, 791
PspFI CCCAGC 2 cut(s) 61, 277
PspN4I GGNNCC 2 cut(s) 14, 616
PspPI GGNCC 3 cut(s) 614, 623, 791
PspPPI RGGWCCY 2 cut(s) 614, 791
PsuI RGATCY 1 cut(s) 869
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 4 cut(s) 375, 547, 639, 900
RsaNI GTAC 4 cut(s) 374, 546, 638, 899
RseI CAYNNNNRTG 3 cut(s) 666, 753, 843
SatI GCNGC 9 cut(s) 50, 68, 81, 89, 159, 167, 198, 237, 282
Sau3AI GATC 4 cut(s) 591, 675, 800, 869
Sau96I GGNCC 3 cut(s) 614, 623, 791
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 1 cut(s) 103
SinI GGWCC 3 cut(s) 614, 623, 791
SmiMI CAYNNNNRTG 3 cut(s) 666, 753, 843
Sse9I AATT 2 cut(s) 504, 822
SsiI CCGC 8 cut(s) 50, 68, 89, 107, 167, 185, 269, 362
StyI CCWWGG 2 cut(s) 561, 619
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 1 cut(s) 660
TaqI TCGA 4 cut(s) 326, 576, 716, 843
TasI AATT 2 cut(s) 504, 822
TatI WGTACW 2 cut(s) 373, 545
TauI GCSGC 4 cut(s) 52, 70, 91, 169
TfiI GAWTC 1 cut(s) 436
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 5 cut(s) 56, 95, 134, 173, 320
TseI GCWGC 5 cut(s) 80, 158, 197, 236, 281
Tsp45I GTSAC 5 cut(s) 56, 95, 134, 173, 320
TspDTI ATGAA 8 cut(s) 454, 511, 560, 650, 702, 737, 771, 827
TspRI CASTG 1 cut(s) 396
VpaK11BI GGWCC 3 cut(s) 614, 623, 791
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.