pycom05g00820

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0013267
Physical Location & Seq
Reverse (-)
1007140 .. 1008093
954 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g00820.1

Sequence Viewer

Length: 954 bp
ATGGCCAATCCAAATAGCTACTACTTCCCATTTTTCCCTCCACCACCTCCGTCCCCGGGGGCAAATCCTCCAAGGCACTCAACCCCACCACCTCCTCCATCAGCAAAACCACCAAGTCAATCAACCCCACCACCAACTCCGTCAGCAAAGCCACCACGTCCATCAATCCCACCACCACCTCCGTCAGCAAAGCCTCCAAGTCACTCAACCCCACCACCACCTCCATCAGCAAAACCACCAAGTCAATCAACCCCACCGCCGACTCCGTCAGCAAAGCCGCCACATCCATCAATCCCACCACCACCACCCCCGGGGGCAAATCCTCCAAGCCCCTCAACCCCATCACCACCACATAAGCCATTTAGGCCACCGCCCCCACCTCACGTACGCCCTCCACCACCGCAATTGCCACCATCACCAACCCCGGACAATCATCCCACCGTCATAGTCATTGTGTTCATATCATTAGGTTCCGTTTTCTTCCTTGCATTCCTTGCGGTTGCCCTACTCTGTTACATCAAGAGGAGAAAGAAGAAGACAATCCAAGAAACCGACTTTATTCACATCGACAAACACCGGAAGATCAAGGAAGCCATTGTCGAAGGTCCCAACGGACCCCAAGCCGTGGTGTTGTCGGTTGAGGATGATGTCCATATCGACGAGGAGATAAGGAAGAATGAGACAATTAGTCACGAGGGTTTGCATGGAAAAGTAAAGAGTTCAGGTGTCCAATCAGATACTGATATCGTTAAAGTCAATGAACATCGGAAGGTGAAGGAAGACATCGTAGAAGGTCCGCATGGGTCGAAAGCTGTGGTGTTGACAATTGACGACGATGTTCATATCGACGAAATAATAAGGAAGAACGAGAGGGTTGGTAAAGGTTTGCATGGCAATGCAGAGGCAGTGAAAATTGATGAGCCTTCAACGAGTTCACGTATTGGTCAGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

33.98

Weight (kDa)

9.3

Isoelectric Point (pI)

66.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43790
fragaria_vesca FvH4_2g14670
malus_domestica MD05G1014900.v1.1 MD10G1014900.v1.1
prunus_persica Prupe.8G018800_v2.0.a1
pyrus_communis pycom05g00820 pycom10g00920
rosa_chinensis RchiOBHm_Chr6g0277141
rosa_laevigata RLG00000013328
rosa_multiflora Rmu_sc0003539.1_g000022 Rmu_sc0006244.1_g000041
rosa_roxburghii Rroxscaffold_7G00191570
rosa_rugosa Rorug06G0106500
rosa_samantha Rh6AG217300 Rh6BG221300 Rh6CG224200 Rh6DG213900
rosa_wichuraiana Rw6G018970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 625
AciI CCGC 6 cut(s) 257, 278, 371, 401, 497, 797
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 3 cut(s) 56, 311, 625
AgsI TTSAA 1 cut(s) 927
AhdI GACNNNNNGTC 1 cut(s) 687
AjiI CACGTC 1 cut(s) 158
AluBI AGCT 3 cut(s) 18, 812, 949
AluI AGCT 3 cut(s) 18, 812, 949
Alw26I GTCTC 1 cut(s) 674
AlwNI CAGNNNCTG 1 cut(s) 740
Ama87I CYCGRG 2 cut(s) 55, 310
AoxI GGCC 2 cut(s) 3, 365
AspS9I GGNCC 3 cut(s) 605, 614, 794
AsuC2I CCSGG 5 cut(s) 56, 57, 311, 312, 425
AsuHPI GGTGA 3 cut(s) 336, 408, 784
AvaI CYCGRG 2 cut(s) 55, 310
AvaII GGWCC 3 cut(s) 605, 614, 794
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 692
BbsI GAAGAC 2 cut(s) 542, 786
BccI CCATC 6 cut(s) 106, 169, 232, 295, 349, 421
BceAI ACGGC 1 cut(s) 608
BcnI CCSGG 5 cut(s) 56, 57, 311, 312, 425
BcoDI GTCTC 1 cut(s) 674
BglI GCCNNNNNGGC 1 cut(s) 364
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
Bme1390I CCNGG 5 cut(s) 56, 57, 311, 312, 425
Bme18I GGWCC 3 cut(s) 605, 614, 794
BmeRI GACNNNNNGTC 1 cut(s) 687
BmeT110I CYCGRG 2 cut(s) 55, 310
BmgBI CACGTC 1 cut(s) 158
BmgT120I GGNCC 3 cut(s) 605, 614, 794
BmiI GGNNCC 3 cut(s) 472, 607, 616
BmrFI CCNGG 5 cut(s) 56, 57, 311, 312, 425
BpiI GAAGAC 2 cut(s) 542, 786
BpuMI CCSGG 5 cut(s) 56, 57, 311, 312, 425
BsaAI YACGTR 2 cut(s) 385, 938
BsaJI CCNNGG 9 cut(s) 54, 55, 56, 71, 309, 310, 311, 423, 624
BsaWI WCCGGW 1 cut(s) 576
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 311, 625
Bse3DI GCAATG 1 cut(s) 901
BseDI CCNNGG 9 cut(s) 54, 55, 56, 71, 309, 310, 311, 423, 624
BseGI GGATG 3 cut(s) 283, 433, 649
BseLI CCNNNNNNNGG 3 cut(s) 56, 311, 625
BseMI GCAATG 1 cut(s) 901
BseRI GAGGAG 3 cut(s) 84, 538, 677
BshFI GGCC 2 cut(s) 5, 367
BsiHKCI CYCGRG 2 cut(s) 55, 310
BsiSI CCGG 4 cut(s) 56, 311, 425, 577
BsiWI CGTACG 1 cut(s) 385
BslFI GGGAC 2 cut(s) 37, 591
BslI CCNNNNNNNGG 3 cut(s) 56, 311, 625
BsmAI GTCTC 1 cut(s) 674
BsmFI GGGAC 2 cut(s) 37, 591
BsmI GAATGC 1 cut(s) 488
BsnI GGCC 2 cut(s) 5, 367
BsoBI CYCGRG 2 cut(s) 55, 310
Bsp143I GATC 1 cut(s) 582
BspACI CCGC 6 cut(s) 257, 278, 371, 401, 497, 797
BspANI GGCC 2 cut(s) 5, 367
BspLI GGNNCC 3 cut(s) 472, 607, 616
BsrDI GCAATG 1 cut(s) 901
BssECI CCNNGG 9 cut(s) 54, 55, 56, 71, 309, 310, 311, 423, 624
BssMI GATC 1 cut(s) 582
BssSI CACGAG 1 cut(s) 692
BssT1I CCWWGG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 692
Bst4CI ACNGT 1 cut(s) 442
BstAPI GCANNNNNTGC 1 cut(s) 494
BstBAI YACGTR 2 cut(s) 385, 938
BstDSI CCRYGG 1 cut(s) 624
BstF5I GGATG 3 cut(s) 283, 433, 649
BstKTI GATC 1 cut(s) 585
BstMAI GTCTC 1 cut(s) 674
BstMBI GATC 1 cut(s) 582
BstMWI GCNNNNNNNGC 2 cut(s) 364, 494
BstSCI CCNGG 5 cut(s) 54, 55, 309, 310, 423
BstV2I GAAGAC 2 cut(s) 542, 786
BsuRI GGCC 2 cut(s) 5, 367
BtgI CCRYGG 1 cut(s) 624
BtrI CACGTC 1 cut(s) 158
BtsCI GGATG 3 cut(s) 283, 433, 649
BtsI GCAGTG 1 cut(s) 912
BtsIMutI CAGTG 1 cut(s) 912
CaiI CAGNNNCTG 1 cut(s) 740
Cfr13I GGNCC 3 cut(s) 605, 614, 794
Cfr9I CCCGGG 2 cut(s) 55, 310
Csp6I GTAC 1 cut(s) 386
CspCI CAANNNNNGTGG 2 cut(s) 387, 422
CviAII CATG 3 cut(s) 704, 800, 890
CviQI GTAC 1 cut(s) 386
DpnI GATC 1 cut(s) 584
DpnII GATC 1 cut(s) 582
DriI GACNNNNNGTC 1 cut(s) 687
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 71
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 3 cut(s) 605, 614, 794
Eco88I CYCGRG 2 cut(s) 55, 310
EcoO109I RGGNCCY 1 cut(s) 605
EcoRV GATATC 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 3 cut(s) 707, 803, 893
FaiI YATR 9 cut(s) 354, 446, 461, 654, 705, 801, 843, 891, 952
FaqI GGGAC 2 cut(s) 37, 591
FatI CATG 3 cut(s) 703, 799, 889
Fnu4HI GCNGC 1 cut(s) 278
FokI GGATG 3 cut(s) 270, 420, 656
Fsp4HI GCNGC 1 cut(s) 278
GluI GCNGC 1 cut(s) 278
HaeIII GGCC 2 cut(s) 5, 367
HapII CCGG 4 cut(s) 56, 311, 425, 577
Hin1II CATG 3 cut(s) 707, 803, 893
HincII GTYRAC 1 cut(s) 822
HindII GTYRAC 1 cut(s) 822
HinfI GANTC 1 cut(s) 262
HpaII CCGG 4 cut(s) 56, 311, 425, 577
HphI GGTGA 3 cut(s) 336, 408, 784
Hpy166II GTNNAC 2 cut(s) 822, 935
Hpy188I TCNGA 2 cut(s) 736, 768
Hpy188III TCNNGA 2 cut(s) 520, 692
Hpy8I GTNNAC 2 cut(s) 822, 935
Hpy99I CGWCG 3 cut(s) 662, 836, 851
HpyAV CCTTC 5 cut(s) 596, 763, 769, 785, 933
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 3 cut(s) 157, 384, 937
HpyCH4V TGCA 4 cut(s) 488, 703, 889, 899
HpyF10VI GCNNNNNNNGC 2 cut(s) 364, 494
HpySE526I ACGT 3 cut(s) 157, 384, 937
Hsp92II CATG 3 cut(s) 707, 803, 893
Kzo9I GATC 1 cut(s) 582
LpnPI CCDG 5 cut(s) 69, 324, 438, 590, 708
MaeII ACGT 3 cut(s) 157, 384, 937
MaeIII GTNAC 3 cut(s) 200, 512, 689
MalI GATC 1 cut(s) 584
MboI GATC 1 cut(s) 582
MboII GAAGA 7 cut(s) 472, 544, 547, 592, 685, 791, 874
MfeI CAATTG 2 cut(s) 404, 825
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 404, 684, 825, 912
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 256
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 750
MslI CAYNNNNRTG 1 cut(s) 894
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 56, 311, 425, 577
MspR9I CCNGG 5 cut(s) 56, 57, 311, 312, 425
MunI CAATTG 2 cut(s) 404, 825
Mva1269I GAATGC 1 cut(s) 488
MwoI GCNNNNNNNGC 2 cut(s) 364, 494
NciI CCSGG 5 cut(s) 56, 57, 311, 312, 425
NdeII GATC 1 cut(s) 582
NlaIII CATG 3 cut(s) 707, 803, 893
NlaIV GGNNCC 3 cut(s) 472, 607, 616
NmuCI GTSAC 2 cut(s) 200, 689
PctI GAATGC 1 cut(s) 488
Pfl23II CGTACG 1 cut(s) 385
PflFI GACNNNGTC 1 cut(s) 265
PflMI CCANNNNNTGG 1 cut(s) 625
PkrI GCNGC 1 cut(s) 279
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
Ppu21I YACGTR 2 cut(s) 385, 938
PpuMI RGGWCCY 1 cut(s) 605
Psp5II RGGWCCY 1 cut(s) 605
PspLI CGTACG 1 cut(s) 385
PspN4I GGNNCC 3 cut(s) 472, 607, 616
PspPI GGNCC 3 cut(s) 605, 614, 794
PspPPI RGGWCCY 1 cut(s) 605
PstNI CAGNNNCTG 1 cut(s) 740
PsyI GACNNNGTC 1 cut(s) 265
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 894
SaqAI TTAA 1 cut(s) 750
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 1 cut(s) 582
Sau96I GGNCC 3 cut(s) 605, 614, 794
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 5 cut(s) 56, 57, 311, 312, 425
SinI GGWCC 3 cut(s) 605, 614, 794
SmaI CCCGGG 2 cut(s) 57, 312
SmiMI CAYNNNNRTG 1 cut(s) 894
Sse9I AATT 4 cut(s) 404, 684, 825, 912
SsiI CCGC 6 cut(s) 257, 278, 371, 401, 497, 797
StyD4I CCNGG 5 cut(s) 54, 55, 309, 310, 423
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 3 cut(s) 160, 387, 940
TaqI TCGA 5 cut(s) 567, 600, 657, 806, 846
TasI AATT 4 cut(s) 404, 684, 825, 912
TauI GCSGC 1 cut(s) 280
Tru1I TTAA 1 cut(s) 750
Tru9I TTAA 1 cut(s) 750
TscAI CASTG 1 cut(s) 912
TseFI GTSAC 2 cut(s) 200, 689
Tsp45I GTSAC 2 cut(s) 200, 689
TspDTI ATGAA 3 cut(s) 448, 774, 830
TspGWI ACGGA 6 cut(s) 39, 129, 171, 255, 463, 627
TspMI CCCGGG 2 cut(s) 55, 310
TspRI CASTG 1 cut(s) 912
Tth111I GACNNNGTC 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 625
VpaK11BI GGWCC 3 cut(s) 605, 614, 794
XmaI CCCGGG 2 cut(s) 55, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.