Rroxscaffold_7G00191570

proline-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
32205470 .. 32206417
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191570.1

Sequence Viewer

Length: 948 bp
ATGGCCATTCGGTTCCCATATTTCCCTCCACCACCTCCAGCTGTAAAGCCGCCAAGTCACCCAGCGCCGCCACCACCGGCAGCAAAGCCGCCAAGTCACTCAGCCCCGCCACCACCACCAGCAAAGCCACCAAGTCATTCAGCCCCACCACCACCACCAGCAACGCCGCCAAGTCACTCAGCCCCGCCACCACCGGCAGCAAAGCCCCCAAGCCACTCAACCCCACCACCTCCGGCAGCTAAGCCACCAAGCCCCTCAACCCCACCACCGCCATCCCCAGCCGCTAAGCCACCAAGCCCCTCAACCCCGCCACCACCATCCCCGGCAGCAAAGCCACCAAGTCACTCGACCCCACCACCACCACATCAGCCATTTAGCCCACCGCCACCTCATGTACACCCACCACCAGCACTGCCACCCCATGTAGCCCCACCACCGCCACCATTGCCACCTTCTCCATCGCCTAATCACCCCACCGTCATAATCATTATATTCATCTCATTTGGTTCTGTTTTCTTCCTTGCATTTCTTGCAATTGCTCTATGTTGTTTCATCAAGAAAAAGAAGAAGAAAAGTACTATGCGAGAAACCGAGGTCATTCATTTCGACGAACATAGGAAGATCAAGGAGGCCATAGTAGAAGGTCCCCATGGACCACAAGCTGTGGTATTATCAGTTGAGGATGATGTTCATATAGATGAGGCGATCAGGAAAAATGAGAAATCTGATAAGAGATGGCCTTCTTCGAGTTCAAATGTCCAAGAAACTGATTTTATTCATGTTGATGAACATGAGAAGGTGAAAGAAGGCATTGTAGAAGGTCCTCATGGGTCAAAAGCTATGCTGTTGACAATTGACGATGATATTCATGTCGATGAGGAGATAAGGAAGAACGAGAGATCTGGTAAAGATGGTCATCACCATCTTGTACACAAGGCCGGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

33.52

Weight (kDa)

8.75

Isoelectric Point (pI)

78.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013267)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 3 cut(s) 396, 577, 930
AgsI TTSAA 1 cut(s) 753
AluBI AGCT 4 cut(s) 41, 239, 662, 839
AluI AGCT 4 cut(s) 41, 239, 662, 839
AoxI GGCC 4 cut(s) 3, 630, 737, 936
ApeKI GCWGC 4 cut(s) 80, 197, 236, 326
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 3 cut(s) 644, 653, 821
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 4 cut(s) 50, 461, 811, 911
AvaII GGWCC 3 cut(s) 644, 653, 821
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 4 cut(s) 92, 209, 248, 338
BccI CCATC 6 cut(s) 280, 325, 466, 729, 905, 930
BcnI CCSGG 1 cut(s) 323
BfoI RGCGCY 1 cut(s) 68
BglII AGATCT 1 cut(s) 899
BisI GCNGC 9 cut(s) 50, 68, 81, 89, 167, 198, 237, 282, 327
BlpI GCTNAGC 2 cut(s) 240, 285
BlsI GCNGC 9 cut(s) 51, 69, 82, 90, 168, 199, 238, 283, 328
BmcAI AGTACT 1 cut(s) 577
Bme1390I CCNGG 1 cut(s) 323
Bme18I GGWCC 3 cut(s) 644, 653, 821
BmgT120I GGNCC 3 cut(s) 644, 653, 821
BmiI GGNNCC 2 cut(s) 14, 646
BmrFI CCNGG 1 cut(s) 323
BpmI CTGGAG 1 cut(s) 21
Bpu1102I GCTNAGC 2 cut(s) 240, 285
BpuMI CCSGG 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 915
BsaJI CCNNGG 3 cut(s) 321, 591, 649
Bse118I RCCGGY 3 cut(s) 76, 193, 938
Bse3DI GCAATG 1 cut(s) 443
Bse8I GATNNNNATC 1 cut(s) 915
BseDI CCNNGG 3 cut(s) 321, 591, 649
BseGI GGATG 3 cut(s) 272, 317, 688
BseJI GATNNNNATC 1 cut(s) 915
BseMI GCAATG 1 cut(s) 443
BseMII CTCAG 2 cut(s) 114, 192
BseRI GAGGAG 1 cut(s) 893
BseXI GCAGC 4 cut(s) 92, 209, 248, 338
BseYI CCCAGC 2 cut(s) 61, 277
BshFI GGCC 4 cut(s) 5, 632, 739, 938
BsiSI CCGG 5 cut(s) 77, 194, 233, 323, 939
BslFI GGGAC 1 cut(s) 630
BsmFI GGGAC 1 cut(s) 630
BsnI GGCC 4 cut(s) 5, 632, 739, 938
Bsp1407I TGTACA 2 cut(s) 394, 928
Bsp143I GATC 3 cut(s) 621, 705, 899
Bsp1720I GCTNAGC 2 cut(s) 240, 285
Bsp19I CCATGG 1 cut(s) 649
BspANI GGCC 4 cut(s) 5, 632, 739, 938
BspCNI CTCAG 2 cut(s) 113, 191
BspLI GGNNCC 2 cut(s) 14, 646
BsrDI GCAATG 1 cut(s) 443
BsrFI RCCGGY 3 cut(s) 76, 193, 938
BsrGI TGTACA 2 cut(s) 394, 928
BssAI RCCGGY 3 cut(s) 76, 193, 938
BssECI CCNNGG 3 cut(s) 321, 591, 649
BssMI GATC 3 cut(s) 621, 705, 899
BssT1I CCWWGG 1 cut(s) 649
Bst4CI ACNGT 1 cut(s) 478
BstAPI GCANNNNNTGC 1 cut(s) 530
BstAUI TGTACA 2 cut(s) 394, 928
BstDEI CTNAG 4 cut(s) 100, 178, 240, 285
BstDSI CCRYGG 1 cut(s) 649
BstF5I GGATG 3 cut(s) 272, 317, 688
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 3 cut(s) 624, 708, 902
BstMBI GATC 3 cut(s) 621, 705, 899
BstMWI GCNNNNNNNGC 2 cut(s) 445, 530
BstSCI CCNGG 1 cut(s) 321
BstV1I GCAGC 4 cut(s) 92, 209, 248, 338
BstX2I RGATCY 1 cut(s) 899
BstYI RGATCY 1 cut(s) 899
BsuRI GGCC 4 cut(s) 5, 632, 739, 938
BtgI CCRYGG 1 cut(s) 649
BtgZI GCGATG 1 cut(s) 444
BtsCI GGATG 3 cut(s) 272, 317, 688
BtsI GCAGTG 1 cut(s) 410
BtsIMutI CAGTG 1 cut(s) 410
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 3 cut(s) 76, 193, 938
Cfr13I GGNCC 3 cut(s) 644, 653, 821
Csp6I GTAC 3 cut(s) 395, 576, 929
CviAII CATG 7 cut(s) 392, 422, 650, 779, 791, 827, 869
CviQI GTAC 3 cut(s) 395, 576, 929
DdeI CTNAG 4 cut(s) 100, 178, 240, 285
DpnI GATC 3 cut(s) 623, 707, 901
DpnII GATC 3 cut(s) 621, 705, 899
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 649
Eco47I GGWCC 3 cut(s) 644, 653, 821
EcoO109I RGGNCCY 2 cut(s) 644, 821
EcoT14I CCWWGG 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 7 cut(s) 395, 425, 653, 782, 794, 830, 872
FaqI GGGAC 1 cut(s) 630
FatI CATG 7 cut(s) 391, 421, 649, 778, 790, 826, 868
FauI CCCGC 3 cut(s) 114, 192, 315
Fnu4HI GCNGC 9 cut(s) 50, 68, 81, 89, 167, 198, 237, 282, 327
FokI GGATG 3 cut(s) 259, 304, 695
Fsp4HI GCNGC 9 cut(s) 50, 68, 81, 89, 167, 198, 237, 282, 327
GlaI GCGC 1 cut(s) 66
GluI GCNGC 9 cut(s) 50, 68, 81, 89, 167, 198, 237, 282, 327
GsaI CCCAGC 2 cut(s) 65, 281
GsuI CTGGAG 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 4 cut(s) 5, 632, 739, 938
HapII CCGG 5 cut(s) 77, 194, 233, 323, 939
HhaI GCGC 1 cut(s) 67
Hin1II CATG 7 cut(s) 395, 425, 653, 782, 794, 830, 872
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 849
HindII GTYRAC 1 cut(s) 849
HpaII CCGG 5 cut(s) 77, 194, 233, 323, 939
HphI GGTGA 4 cut(s) 50, 461, 811, 911
Hpy166II GTNNAC 3 cut(s) 397, 849, 931
Hpy188I TCNGA 1 cut(s) 727
Hpy188III TCNNGA 2 cut(s) 556, 709
Hpy8I GTNNAC 3 cut(s) 397, 849, 931
Hpy99I CGWCG 1 cut(s) 611
HpyAV CCTTC 6 cut(s) 462, 635, 750, 790, 800, 812
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4V TGCA 2 cut(s) 524, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 445, 530
HpyF3I CTNAG 4 cut(s) 100, 178, 240, 285
Hsp92II CATG 7 cut(s) 395, 425, 653, 782, 794, 830, 872
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 3 cut(s) 621, 705, 899
Lsp1109I GCAGC 4 cut(s) 92, 209, 248, 338
MaeIII GTNAC 4 cut(s) 56, 95, 173, 341
MalI GATC 3 cut(s) 623, 707, 901
MboI GATC 3 cut(s) 621, 705, 899
MboII GAAGA 6 cut(s) 508, 577, 580, 631, 735, 901
MfeI CAATTG 2 cut(s) 534, 852
MflI RGATCY 1 cut(s) 899
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 534, 852
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 3 cut(s) 696, 783, 873
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 5 cut(s) 77, 194, 233, 323, 939
MspR9I CCNGG 1 cut(s) 323
MunI CAATTG 2 cut(s) 534, 852
MwoI GCNNNNNNNGC 2 cut(s) 445, 530
NciI CCSGG 1 cut(s) 323
NcoI CCATGG 1 cut(s) 649
NdeII GATC 3 cut(s) 621, 705, 899
NlaIII CATG 7 cut(s) 395, 425, 653, 782, 794, 830, 872
NlaIV GGNNCC 2 cut(s) 14, 646
NmuCI GTSAC 4 cut(s) 56, 95, 173, 341
PkrI GCNGC 9 cut(s) 51, 69, 82, 90, 168, 199, 238, 283, 328
PpuMI RGGWCCY 2 cut(s) 644, 821
Psp5II RGGWCCY 2 cut(s) 644, 821
PspFI CCCAGC 2 cut(s) 61, 277
PspN4I GGNNCC 2 cut(s) 14, 646
PspPI GGNCC 3 cut(s) 644, 653, 821
PspPPI RGGWCCY 2 cut(s) 644, 821
PsuI RGATCY 1 cut(s) 899
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 3 cut(s) 396, 577, 930
RsaNI GTAC 3 cut(s) 395, 576, 929
RseI CAYNNNNRTG 3 cut(s) 696, 783, 873
SatI GCNGC 9 cut(s) 50, 68, 81, 89, 167, 198, 237, 282, 327
Sau3AI GATC 3 cut(s) 621, 705, 899
Sau96I GGNCC 3 cut(s) 644, 653, 821
ScaI AGTACT 1 cut(s) 577
ScrFI CCNGG 1 cut(s) 323
SinI GGWCC 3 cut(s) 644, 653, 821
SmiMI CAYNNNNRTG 3 cut(s) 696, 783, 873
Sse9I AATT 2 cut(s) 534, 852
StyD4I CCNGG 1 cut(s) 321
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 1 cut(s) 478
TaqI TCGA 4 cut(s) 347, 606, 746, 873
TasI AATT 2 cut(s) 534, 852
TatI WGTACW 3 cut(s) 394, 575, 928
TauI GCSGC 5 cut(s) 52, 70, 91, 169, 284
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 4 cut(s) 56, 95, 173, 341
TseI GCWGC 4 cut(s) 80, 197, 236, 326
Tsp45I GTSAC 4 cut(s) 56, 95, 173, 341
TspDTI ATGAA 7 cut(s) 484, 541, 590, 680, 767, 801, 857
TspRI CASTG 1 cut(s) 417
VpaK11BI GGWCC 3 cut(s) 644, 653, 821
ZrmI AGTACT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.