Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013267

Physical Location & Seq

Genomic Coordinates Reverse (-)

1751820 .. 1752608

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G018800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCGGCCAATCCAAATAAGTTCTACTTCCCGTATTTCCCTCCACCCTCACCACCTCCTCCATCCGCTCCAAGCCAATCAACCCCGCCACCAGCAGCAGCCCCGGCGGCAAAGCCTCCAAGTCACTCAACCCCAGCACCACCACCCCCGGCTGCAAAGCCTCCAAGCCACTCAACCCCACCACCACCACCACACCACCCATTCCGTCCACCTCCGCCTCATGTTCGCCCTCCACCACCGCCACTGCCACCCTCACCATCCCCGGACAATAATCCCACCGTCATAATCATTGTGTTCATCTCATTGGGTTCAGTTTTCTTCCTTGCATTCCTTGCATTTGCTCTACTTTGTTGGATTAAGAGAAGAAAGAAGAAGACAATCCAAGAAACCGACATCATTCATATTGACAAACACAGGAAGATCAAGGAGAAAATTGTAGAAGGTCCCTATGGACCACAAGCTGTGGTATTATCAGTTGAAGATGATGTCCATATAGACGAGGAGATAAGGAAGAATGAGACAATTGGCCACAAGGGTTTGCATGGAAAAGTAAAGAGCTCAGATGTCCAAGCAGAAACTGAGATCATTAACTTCGATGAACATAAAAAGGTCAAGGAAGACATAGTAGGAGGTCCCTATGGATCAAAAGCTGTGGTGTTAACAATTGAGGATGATGTTCATATGGACGAAGTGGTGAGGAAGAATGAGAGAGTTGGTAAAGGTTTGCATGCTGCCAATGTAGTGGCACCGAAAGATGAGCCTTCAACGAGTTCAGATATTGGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

28.44

Weight (kDa)

7.9

Isoelectric Point (pI)

67.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43790
fragaria_vesca	FvH4_2g14670
malus_domestica	MD05G1014900.v1.1 MD10G1014900.v1.1
prunus_persica	Prupe.8G018800_v2.0.a1
pyrus_communis	pycom05g00820 pycom10g00920
rosa_chinensis	RchiOBHm_Chr6g0277141
rosa_laevigata	RLG00000013328
rosa_multiflora	Rmu_sc0003539.1_g000022 Rmu_sc0006244.1_g000041
rosa_roxburghii	Rroxscaffold_7G00191570
rosa_rugosa	Rorug06G0106500
rosa_samantha	Rh6AG217300 Rh6BG221300 Rh6CG224200 Rh6DG213900
rosa_wichuraiana	Rw6G018970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	745
AccBSI	CCGCTC	1 cut(s)	68
AciI	CCGC	6 cut(s)	5, 66, 86, 107, 215, 239
AclWI	GGATC	1 cut(s)	649
AcoI	YGGCCR	3 cut(s)	6, 526, 781
AgsI	TTSAA	2 cut(s)	479, 765
AluBI	AGCT	3 cut(s)	461, 558, 650
AluI	AGCT	3 cut(s)	461, 558, 650
Alw21I	GWGCWC	1 cut(s)	560
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	649
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	3 cut(s)	6, 526, 781
ApeKI	GCWGC	4 cut(s)	95, 98, 152, 731
AspS9I	GGNCC	3 cut(s)	443, 452, 632
AsuC2I	CCSGG	3 cut(s)	104, 149, 263
AsuHPI	GGTGA	3 cut(s)	42, 246, 706
AvaII	GGWCC	3 cut(s)	443, 452, 632
BalI	TGGCCA	2 cut(s)	528, 783
BanI	GGYRCC	1 cut(s)	745
BanII	GRGCYC	1 cut(s)	560
BbsI	GAAGAC	2 cut(s)	380, 624
Bbv12I	GWGCWC	1 cut(s)	560
BbvI	GCAGC	4 cut(s)	107, 110, 139, 718
BccI	CCATC	2 cut(s)	70, 265
BcnI	CCSGG	3 cut(s)	104, 149, 263
BcoDI	GTCTC	1 cut(s)	512
BglI	GCCNNNNNGGC	1 cut(s)	107
BisI	GCNGC	6 cut(s)	6, 96, 99, 108, 153, 732
BlsI	GCNGC	6 cut(s)	7, 97, 100, 109, 154, 733
Bme1390I	CCNGG	3 cut(s)	104, 149, 263
Bme18I	GGWCC	3 cut(s)	443, 452, 632
BmgT120I	GGNCC	3 cut(s)	443, 452, 632
BmiI	GGNNCC	3 cut(s)	445, 634, 747
BmrFI	CCNGG	3 cut(s)	104, 149, 263
BpiI	GAAGAC	2 cut(s)	380, 624
BpuMI	CCSGG	3 cut(s)	104, 149, 263
BsaJI	CCNNGG	3 cut(s)	102, 147, 261
BseDI	CCNNGG	3 cut(s)	102, 147, 261
BseGI	GGATG	3 cut(s)	62, 257, 676
BseMII	CTCAG	2 cut(s)	570, 573
BseRI	GAGGAG	2 cut(s)	48, 515
BseXI	GCAGC	4 cut(s)	107, 110, 139, 718
BseYI	CCCAGC	1 cut(s)	133
BshFI	GGCC	3 cut(s)	8, 528, 783
BshNI	GGYRCC	1 cut(s)	745
BsiHKAI	GWGCWC	1 cut(s)	560
BsiSI	CCGG	3 cut(s)	104, 149, 263
BslFI	GGGAC	2 cut(s)	429, 618
BsmAI	GTCTC	1 cut(s)	512
BsmFI	GGGAC	2 cut(s)	429, 618
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	8, 528, 783
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	3 cut(s)	420, 582, 641
BspACI	CCGC	6 cut(s)	5, 66, 86, 107, 215, 239
BspANI	GGCC	3 cut(s)	8, 528, 783
BspCNI	CTCAG	2 cut(s)	571, 572
BspLI	GGNNCC	3 cut(s)	445, 634, 747
BspPI	GGATC	1 cut(s)	649
BspT107I	GGYRCC	1 cut(s)	745
BsrBI	CCGCTC	1 cut(s)	68
BssECI	CCNNGG	3 cut(s)	102, 147, 261
BssMI	GATC	3 cut(s)	420, 582, 641
Bst4CI	ACNGT	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	729
BstDEI	CTNAG	2 cut(s)	559, 579
BstF5I	GGATG	3 cut(s)	62, 257, 676
BstKTI	GATC	3 cut(s)	423, 585, 644
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	3 cut(s)	420, 582, 641
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 107, 332
BstNSI	RCATGY	1 cut(s)	731
BstSCI	CCNGG	3 cut(s)	102, 147, 261
BstV1I	GCAGC	4 cut(s)	107, 110, 139, 718
BstV2I	GAAGAC	2 cut(s)	380, 624
BstXI	CCANNNNNNTGG	1 cut(s)	742
BsuRI	GGCC	3 cut(s)	8, 528, 783
BtsCI	GGATG	3 cut(s)	62, 257, 676
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	729
CaiI	CAGNNNCTG	1 cut(s)	578
Cfr13I	GGNCC	3 cut(s)	443, 452, 632
CspCI	CAANNNNNGTGG	2 cut(s)	633, 668
CviAII	CATG	3 cut(s)	221, 542, 728
DdeI	CTNAG	2 cut(s)	559, 579
DpnI	GATC	3 cut(s)	422, 584, 643
DpnII	GATC	3 cut(s)	420, 582, 641
EaeI	YGGCCR	3 cut(s)	6, 526, 781
EciI	GGCGGA	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	560
Eco47I	GGWCC	3 cut(s)	443, 452, 632
Eco53kI	GAGCTC	1 cut(s)	558
EcoICRI	GAGCTC	1 cut(s)	558
EcoO109I	RGGNCCY	2 cut(s)	443, 632
EcoT38I	GRGCYC	1 cut(s)	560
FaeI	CATG	3 cut(s)	224, 545, 731
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	2 cut(s)	429, 618
FatI	CATG	3 cut(s)	220, 541, 727
FauI	CCCGC	1 cut(s)	93
FauNDI	CATATG	1 cut(s)	681
Fnu4HI	GCNGC	6 cut(s)	6, 96, 99, 108, 153, 732
FokI	GGATG	3 cut(s)	49, 244, 683
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	6 cut(s)	6, 96, 99, 108, 153, 732
GluI	GCNGC	6 cut(s)	6, 96, 99, 108, 153, 732
GsaI	CCCAGC	1 cut(s)	137
HaeIII	GGCC	3 cut(s)	8, 528, 783
HapII	CCGG	3 cut(s)	104, 149, 263
Hin1II	CATG	3 cut(s)	224, 545, 731
HincII	GTYRAC	1 cut(s)	660
HindII	GTYRAC	1 cut(s)	660
HpaI	GTTAAC	1 cut(s)	660
HpaII	CCGG	3 cut(s)	104, 149, 263
HphI	GGTGA	3 cut(s)	42, 246, 706
Hpy166II	GTNNAC	2 cut(s)	209, 660
Hpy188I	TCNGA	2 cut(s)	562, 775
Hpy8I	GTNNAC	2 cut(s)	209, 660
HpyAV	CCTTC	2 cut(s)	434, 771
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	5 cut(s)	155, 326, 335, 541, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 107, 332
HpyF3I	CTNAG	2 cut(s)	559, 579
Hsp92II	CATG	3 cut(s)	224, 545, 731
KspAI	GTTAAC	1 cut(s)	660
Kzo9I	GATC	3 cut(s)	420, 582, 641
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	6 cut(s)	105, 117, 147, 162, 276, 400
Lsp1109I	GCAGC	4 cut(s)	107, 110, 139, 718
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	3 cut(s)	422, 584, 643
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	3 cut(s)	420, 582, 641
MboII	GAAGA	9 cut(s)	310, 375, 382, 385, 430, 491, 523, 629, 712
MfeI	CAATTG	2 cut(s)	522, 663
MhlI	GDGCHC	1 cut(s)	560
MlsI	TGGCCA	2 cut(s)	528, 783
MluCI	AATT	3 cut(s)	432, 522, 663
MluNI	TGGCCA	2 cut(s)	528, 783
MmeI	TCCRAC	1 cut(s)	332
Mox20I	TGGCCA	2 cut(s)	528, 783
MscI	TGGCCA	2 cut(s)	528, 783
MseI	TTAA	3 cut(s)	357, 588, 659
Msp20I	TGGCCA	2 cut(s)	528, 783
MspI	CCGG	3 cut(s)	104, 149, 263
MspR9I	CCNGG	3 cut(s)	104, 149, 263
MunI	CAATTG	2 cut(s)	522, 663
Mva1269I	GAATGC	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	104, 107, 332
NciI	CCSGG	3 cut(s)	104, 149, 263
NdeI	CATATG	1 cut(s)	681
NdeII	GATC	3 cut(s)	420, 582, 641
NlaIII	CATG	3 cut(s)	224, 545, 731
NlaIV	GGNNCC	3 cut(s)	445, 634, 747
NmuCI	GTSAC	1 cut(s)	122
NspI	RCATGY	1 cut(s)	731
PaeI	GCATGC	1 cut(s)	731
PctI	GAATGC	1 cut(s)	326
PkrI	GCNGC	6 cut(s)	7, 97, 100, 109, 154, 733
PpuMI	RGGWCCY	2 cut(s)	443, 632
Psp124BI	GAGCTC	1 cut(s)	560
Psp5II	RGGWCCY	2 cut(s)	443, 632
PspFI	CCCAGC	1 cut(s)	133
PspN4I	GGNNCC	3 cut(s)	445, 634, 747
PspPI	GGNCC	3 cut(s)	443, 452, 632
PspPPI	RGGWCCY	2 cut(s)	443, 632
PstNI	CAGNNNCTG	1 cut(s)	578
SacI	GAGCTC	1 cut(s)	560
SaqAI	TTAA	3 cut(s)	357, 588, 659
SatI	GCNGC	6 cut(s)	6, 96, 99, 108, 153, 732
Sau3AI	GATC	3 cut(s)	420, 582, 641
Sau96I	GGNCC	3 cut(s)	443, 452, 632
ScrFI	CCNGG	3 cut(s)	104, 149, 263
SduI	GDGCHC	1 cut(s)	560
SetI	ASST	9 cut(s)	58, 214, 445, 463, 560, 612, 634, 652, 724
SinI	GGWCC	3 cut(s)	443, 452, 632
SphI	GCATGC	1 cut(s)	731
Sse9I	AATT	3 cut(s)	432, 522, 663
SsiI	CCGC	6 cut(s)	5, 66, 86, 107, 215, 239
SstI	GAGCTC	1 cut(s)	560
StyD4I	CCNGG	3 cut(s)	102, 147, 261
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	594
TasI	AATT	3 cut(s)	432, 522, 663
TauI	GCSGC	2 cut(s)	8, 110
Tru1I	TTAA	3 cut(s)	357, 588, 659
Tru9I	TTAA	3 cut(s)	357, 588, 659
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	4 cut(s)	95, 98, 152, 731
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	4 cut(s)	286, 389, 612, 668
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	249
VpaK11BI	GGWCC	3 cut(s)	443, 452, 632
XceI	RCATGY	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.