RLG00000013328

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013267
Physical Location & Seq
Reverse (-)
29939421 .. 29940667
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013328

Sequence Viewer

Length: 936 bp
ATGGTCATTCCAAATAATCTCTCCTTCCCATATTTCCCTCCACCACCTCCAGCTGTCAAGCCGCCAAGTCACCCAGCGCCGCCACCACCAGCGCCAAGTCACCCAGCGCCGCCACCACCAGCTCCAAGTCACTCAGCCCCGCCACCACCACCAGCAAAGCCACCAAGTCACTCAGCCCCGCCACCACCAGCAGCAAAGCCGCCAAGTCACTCAGCCCCGCCACCACCGGCAGCAAAGCCCCCAAGCCACTCAACCCCACCACCTCCGGCAGCTAAGCCACCAAGCCCCTCAACCCCGCCACCACCATCCCCGGCAGCAAAGCCACCAAGTCACTCGACCCCACCACCACCACATCAGCCATTTAGCCCACCGCCACCTTATGTACACCCACCACCAGCACTGCCACCCCATGTTGGCCCACCACCGCCACCATTGCCACCTTCTCCATCGCCGAATCACCCCACCATCATAATCATTATATTCATCTCATTTGGTTCTGTTTTCTTCCTTGCATTTCTTGCAATTGCTCTATGTTGTTTCATCAAGAAAAAGAAGAAGAAGAGTACTATCCAAGAAACCGAGGTCATTCATTTCGACGAACATAGGAAGATCAAGGAGGCCATAGTAGAAGGTCCCCATGGACCACAAGCTGTGGTACTATCAGTTGAGGATGATGTTCATATAGATGAGGCGATCAGGAAAAAAGAGAAATCTGATAAGAGATGGCCTTCTTCGAGTTCAAATGTCCAAGAAACTGATTTTATTCATGTTGATGAACATGAGAAGGTGAAAGAAGGCATTATAGAAGGTCCTCATGGATCAAAAGCTATGCTGTTGACAATTGACGATGATATTCATGTCGATGAGGAGATAAGCAAGAACGAGAGATCTGGTAAAGATGGTCATCACCATCTTGTACACAAGGCCGGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

33.1

Weight (kDa)

7.41

Isoelectric Point (pI)

77.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43790
fragaria_vesca FvH4_2g14670
malus_domestica MD05G1014900.v1.1 MD10G1014900.v1.1
prunus_persica Prupe.8G018800_v2.0.a1
pyrus_communis pycom05g00820 pycom10g00920
rosa_chinensis RchiOBHm_Chr6g0277141
rosa_laevigata RLG00000013328
rosa_multiflora Rmu_sc0003539.1_g000022 Rmu_sc0006244.1_g000041
rosa_roxburghii Rroxscaffold_7G00191570
rosa_rugosa Rorug06G0106500
rosa_samantha Rh6AG217300 Rh6BG221300 Rh6CG224200 Rh6DG213900
rosa_wichuraiana Rw6G018970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 826
AfaI GTAC 4 cut(s) 384, 565, 657, 918
AfiI CCNNNNNNNGG 1 cut(s) 413
AgsI TTSAA 1 cut(s) 741
AluBI AGCT 5 cut(s) 53, 122, 272, 650, 827
AluI AGCT 5 cut(s) 53, 122, 272, 650, 827
AlwI GGATC 1 cut(s) 826
AoxI GGCC 4 cut(s) 415, 618, 725, 924
ApeKI GCWGC 4 cut(s) 191, 230, 269, 314
AspLEI GCGC 3 cut(s) 79, 94, 109
AspS9I GGNCC 4 cut(s) 416, 632, 641, 809
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 5 cut(s) 62, 92, 449, 799, 899
AvaII GGWCC 3 cut(s) 632, 641, 809
BbvI GCAGC 4 cut(s) 203, 242, 281, 326
BccI CCATC 6 cut(s) 313, 454, 473, 717, 893, 918
BcnI CCSGG 1 cut(s) 311
BfoI RGCGCY 3 cut(s) 80, 95, 110
BglII AGATCT 1 cut(s) 887
BisI GCNGC 8 cut(s) 62, 80, 110, 192, 200, 231, 270, 315
BlpI GCTNAGC 1 cut(s) 273
BlsI GCNGC 8 cut(s) 63, 81, 111, 193, 201, 232, 271, 316
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 3 cut(s) 632, 641, 809
BmgT120I GGNCC 4 cut(s) 416, 632, 641, 809
BmiI GGNNCC 1 cut(s) 634
BmrFI CCNGG 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 33
Bpu1102I GCTNAGC 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 903
BsaJI CCNNGG 3 cut(s) 309, 579, 637
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse118I RCCGGY 2 cut(s) 226, 926
Bse3DI GCAATG 1 cut(s) 431
Bse8I GATNNNNATC 1 cut(s) 903
BseDI CCNNGG 3 cut(s) 309, 579, 637
BseGI GGATG 2 cut(s) 305, 676
BseJI GATNNNNATC 1 cut(s) 903
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMI GCAATG 1 cut(s) 431
BseMII CTCAG 3 cut(s) 147, 186, 225
BseRI GAGGAG 1 cut(s) 881
BseXI GCAGC 4 cut(s) 203, 242, 281, 326
BseYI CCCAGC 2 cut(s) 73, 103
BshFI GGCC 4 cut(s) 417, 620, 727, 926
BsiSI CCGG 4 cut(s) 227, 266, 311, 927
BslFI GGGAC 1 cut(s) 618
BslI CCNNNNNNNGG 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 618
BsnI GGCC 4 cut(s) 417, 620, 727, 926
Bsp1407I TGTACA 2 cut(s) 382, 916
Bsp143I GATC 4 cut(s) 609, 693, 818, 887
Bsp1720I GCTNAGC 1 cut(s) 273
Bsp19I CCATGG 1 cut(s) 637
BspANI GGCC 4 cut(s) 417, 620, 727, 926
BspCNI CTCAG 3 cut(s) 146, 185, 224
BspLI GGNNCC 1 cut(s) 634
BspPI GGATC 1 cut(s) 826
BsrDI GCAATG 1 cut(s) 431
BsrFI RCCGGY 2 cut(s) 226, 926
BsrGI TGTACA 2 cut(s) 382, 916
BssAI RCCGGY 2 cut(s) 226, 926
BssECI CCNNGG 3 cut(s) 309, 579, 637
BssMI GATC 4 cut(s) 609, 693, 818, 887
BssT1I CCWWGG 1 cut(s) 637
Bst6I CTCTTC 1 cut(s) 554
BstAPI GCANNNNNTGC 1 cut(s) 518
BstAUI TGTACA 2 cut(s) 382, 916
BstDEI CTNAG 4 cut(s) 133, 172, 211, 273
BstDSI CCRYGG 1 cut(s) 637
BstF5I GGATG 2 cut(s) 305, 676
BstH2I RGCGCY 3 cut(s) 80, 95, 110
BstHHI GCGC 3 cut(s) 79, 94, 109
BstKTI GATC 4 cut(s) 612, 696, 821, 890
BstMBI GATC 4 cut(s) 609, 693, 818, 887
BstMWI GCNNNNNNNGC 2 cut(s) 433, 518
BstSCI CCNGG 1 cut(s) 309
BstV1I GCAGC 4 cut(s) 203, 242, 281, 326
BstX2I RGATCY 1 cut(s) 887
BstYI RGATCY 1 cut(s) 887
BsuRI GGCC 4 cut(s) 417, 620, 727, 926
BtgI CCRYGG 1 cut(s) 637
BtgZI GCGATG 1 cut(s) 432
BtsCI GGATG 2 cut(s) 305, 676
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 1 cut(s) 398
CfoI GCGC 3 cut(s) 79, 94, 109
Cfr10I RCCGGY 2 cut(s) 226, 926
Cfr13I GGNCC 4 cut(s) 416, 632, 641, 809
Csp6I GTAC 4 cut(s) 383, 564, 656, 917
CviAII CATG 6 cut(s) 410, 638, 767, 779, 815, 857
CviQI GTAC 4 cut(s) 383, 564, 656, 917
DdeI CTNAG 4 cut(s) 133, 172, 211, 273
DpnI GATC 4 cut(s) 611, 695, 820, 889
DpnII GATC 4 cut(s) 609, 693, 818, 887
Eam1104I CTCTTC 1 cut(s) 554
EarI CTCTTC 1 cut(s) 554
Eco130I CCWWGG 1 cut(s) 637
Eco47I GGWCC 3 cut(s) 632, 641, 809
EcoO109I RGGNCCY 2 cut(s) 632, 809
EcoT14I CCWWGG 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 637
FaeI CATG 6 cut(s) 413, 641, 770, 782, 818, 860
FaqI GGGAC 1 cut(s) 618
FatI CATG 6 cut(s) 409, 637, 766, 778, 814, 856
FauI CCCGC 4 cut(s) 147, 186, 225, 303
Fnu4HI GCNGC 8 cut(s) 62, 80, 110, 192, 200, 231, 270, 315
FokI GGATG 2 cut(s) 292, 683
Fsp4HI GCNGC 8 cut(s) 62, 80, 110, 192, 200, 231, 270, 315
GlaI GCGC 3 cut(s) 78, 93, 108
GluI GCNGC 8 cut(s) 62, 80, 110, 192, 200, 231, 270, 315
GsaI CCCAGC 2 cut(s) 77, 107
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 3 cut(s) 80, 95, 110
HaeIII GGCC 4 cut(s) 417, 620, 727, 926
HapII CCGG 4 cut(s) 227, 266, 311, 927
HhaI GCGC 3 cut(s) 79, 94, 109
Hin1II CATG 6 cut(s) 413, 641, 770, 782, 818, 860
Hin6I GCGC 3 cut(s) 77, 92, 107
HinP1I GCGC 3 cut(s) 77, 92, 107
HincII GTYRAC 1 cut(s) 837
HindII GTYRAC 1 cut(s) 837
HinfI GANTC 1 cut(s) 454
HpaII CCGG 4 cut(s) 227, 266, 311, 927
HphI GGTGA 5 cut(s) 62, 92, 449, 799, 899
Hpy166II GTNNAC 3 cut(s) 385, 837, 919
Hpy188I TCNGA 1 cut(s) 715
Hpy188III TCNNGA 2 cut(s) 544, 697
Hpy8I GTNNAC 3 cut(s) 385, 837, 919
Hpy99I CGWCG 1 cut(s) 599
HpyAV CCTTC 7 cut(s) 34, 450, 623, 738, 778, 788, 800
HpyCH4V TGCA 2 cut(s) 512, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 433, 518
HpyF3I CTNAG 4 cut(s) 133, 172, 211, 273
Hsp92II CATG 6 cut(s) 413, 641, 770, 782, 818, 860
HspAI GCGC 3 cut(s) 77, 92, 107
Kzo9I GATC 4 cut(s) 609, 693, 818, 887
LmnI GCTCC 1 cut(s) 127
Lsp1109I GCAGC 4 cut(s) 203, 242, 281, 326
MaeIII GTNAC 6 cut(s) 68, 98, 128, 167, 206, 329
MalI GATC 4 cut(s) 611, 695, 820, 889
MboI GATC 4 cut(s) 609, 693, 818, 887
MboII GAAGA 6 cut(s) 496, 565, 568, 571, 619, 723
MfeI CAATTG 2 cut(s) 522, 840
MflI RGATCY 1 cut(s) 887
MluCI AATT 2 cut(s) 522, 840
MslI CAYNNNNRTG 3 cut(s) 684, 771, 861
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 4 cut(s) 227, 266, 311, 927
MspR9I CCNGG 1 cut(s) 311
MunI CAATTG 2 cut(s) 522, 840
MwoI GCNNNNNNNGC 2 cut(s) 433, 518
NciI CCSGG 1 cut(s) 311
NcoI CCATGG 1 cut(s) 637
NdeII GATC 4 cut(s) 609, 693, 818, 887
NlaIII CATG 6 cut(s) 413, 641, 770, 782, 818, 860
NlaIV GGNNCC 1 cut(s) 634
NmuCI GTSAC 6 cut(s) 68, 98, 128, 167, 206, 329
PfeI GAWTC 1 cut(s) 454
PkrI GCNGC 8 cut(s) 63, 81, 111, 193, 201, 232, 271, 316
PpuMI RGGWCCY 2 cut(s) 632, 809
Psp5II RGGWCCY 2 cut(s) 632, 809
PspFI CCCAGC 2 cut(s) 73, 103
PspN4I GGNNCC 1 cut(s) 634
PspPI GGNCC 4 cut(s) 416, 632, 641, 809
PspPPI RGGWCCY 2 cut(s) 632, 809
PsuI RGATCY 1 cut(s) 887
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 4 cut(s) 384, 565, 657, 918
RsaNI GTAC 4 cut(s) 383, 564, 656, 917
RseI CAYNNNNRTG 3 cut(s) 684, 771, 861
SatI GCNGC 8 cut(s) 62, 80, 110, 192, 200, 231, 270, 315
Sau3AI GATC 4 cut(s) 609, 693, 818, 887
Sau96I GGNCC 4 cut(s) 416, 632, 641, 809
ScaI AGTACT 1 cut(s) 565
ScrFI CCNGG 1 cut(s) 311
SinI GGWCC 3 cut(s) 632, 641, 809
SmiMI CAYNNNNRTG 3 cut(s) 684, 771, 861
Sse9I AATT 2 cut(s) 522, 840
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 1 cut(s) 637
TaqI TCGA 4 cut(s) 335, 594, 734, 861
TasI AATT 2 cut(s) 522, 840
TatI WGTACW 3 cut(s) 382, 563, 916
TauI GCSGC 4 cut(s) 64, 82, 112, 202
TfiI GAWTC 1 cut(s) 454
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 6 cut(s) 68, 98, 128, 167, 206, 329
TseI GCWGC 4 cut(s) 191, 230, 269, 314
Tsp45I GTSAC 6 cut(s) 68, 98, 128, 167, 206, 329
TspDTI ATGAA 7 cut(s) 472, 529, 578, 668, 755, 789, 845
TspRI CASTG 1 cut(s) 405
VpaK11BI GGWCC 3 cut(s) 632, 641, 809
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.