Rh6CG224200

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013267
Physical Location & Seq
Forward (+)
37399212 .. 37400460
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG224200.1

Sequence Viewer

Length: 888 bp
ATGGCCATTCGGTTCCCATATTTCCCTCCACCACCTCCAGCTGTAAAGCCGCCAAGTCACCCAGCGCCGCCACCAGCAGCAGCAAAGCCACCAAGTCACTCAGCCCCACCACCAGCAGCAGCAAAGCCGCCAAGTCACTCAGCCCCGCCACCACCGGCAGCAAAGCCCCCAAGCCACTCAACCCCACCACCTCCGGCAGCTAAGCCACCAAGCCCCTCAACCCCACCACCGCCATCCCCAGCAGCTAAGCCACCAAGCCCCTCAACTCCGTCACCACCAAGTCACTCGACCCCACCACCACCACATCAGCCATTTAGCCCACCGCCACCTCATGTACACCCACCACCAGCACTGCCACCCCATGTAGCCCCACCACCGCCACCATTGCCACCTTCTCCATCGCCGAATCACCCCACCGTCATAATCATTATATTCATCTCATTTGGTTCTGTTTTCTTCCTTGCATTTCTTGCAATTGCTCTATGTTGTTTCATCAAGAAAAAGAAGAAGAAGAGTACTATCCAAGAAACCAAGGTCATTCATTTCGACGAACATAGGAAGATCAAGGAGGCCATAGTAGAAGGTCCCCATGGACCACAAGCTGTGGTACTATCAGTTGAGGATGATGTTCATATAGATGAGGCGATCAGGAAAAATGAGAAATCTGATAAGAGATGGCCTTCTTCGAGTTCAAATGTCCAAGAAACTGATTTTATTCATGTTGATGAACATGAGAAGGTGAAAGAAGGCATTGTAGAAGGTCCTCATGGATCAAAAGCTATGCTGTTGACAATTGACGATGATATTCATGTCGATGAGGAGATATGCAAGAACGAGAGATCTGGTAAAGATGGTCATCACCATCTGGTACACAATGCCGGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

31.43

Weight (kDa)

7.88

Isoelectric Point (pI)

73.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43790
fragaria_vesca FvH4_2g14670
malus_domestica MD05G1014900.v1.1 MD10G1014900.v1.1
prunus_persica Prupe.8G018800_v2.0.a1
pyrus_communis pycom05g00820 pycom10g00920
rosa_chinensis RchiOBHm_Chr6g0277141
rosa_laevigata RLG00000013328
rosa_multiflora Rmu_sc0003539.1_g000022 Rmu_sc0006244.1_g000041
rosa_roxburghii Rroxscaffold_7G00191570
rosa_rugosa Rorug06G0106500
rosa_samantha Rh6AG217300 Rh6BG221300 Rh6CG224200 Rh6DG213900
rosa_wichuraiana Rw6G018970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 50, 68, 128, 146, 230, 323, 377
AclWI GGATC 1 cut(s) 778
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 4 cut(s) 336, 517, 609, 870
AgsI TTSAA 1 cut(s) 693
AluBI AGCT 5 cut(s) 41, 200, 245, 602, 779
AluI AGCT 5 cut(s) 41, 200, 245, 602, 779
AlwI GGATC 1 cut(s) 778
AoxI GGCC 3 cut(s) 3, 570, 677
ApeKI GCWGC 7 cut(s) 77, 80, 116, 119, 158, 197, 242
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 3 cut(s) 584, 593, 761
AsuHPI GGTGA 5 cut(s) 50, 264, 401, 751, 851
AvaII GGWCC 3 cut(s) 584, 593, 761
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 7 cut(s) 89, 92, 128, 131, 170, 209, 254
BccI CCATC 5 cut(s) 241, 406, 669, 845, 870
BfoI RGCGCY 1 cut(s) 68
BglII AGATCT 1 cut(s) 839
BlpI GCTNAGC 2 cut(s) 201, 246
BmcAI AGTACT 1 cut(s) 517
Bme18I GGWCC 3 cut(s) 584, 593, 761
BmgT120I GGNCC 3 cut(s) 584, 593, 761
BmiI GGNNCC 2 cut(s) 14, 586
BpmI CTGGAG 1 cut(s) 21
Bpu1102I GCTNAGC 2 cut(s) 201, 246
BsaBI GATNNNNATC 1 cut(s) 855
BsaJI CCNNGG 2 cut(s) 531, 589
Bse118I RCCGGY 2 cut(s) 154, 878
Bse3DI GCAATG 1 cut(s) 383
Bse8I GATNNNNATC 1 cut(s) 855
BseDI CCNNGG 2 cut(s) 531, 589
BseGI GGATG 2 cut(s) 233, 628
BseJI GATNNNNATC 1 cut(s) 855
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 2 cut(s) 114, 153
BseRI GAGGAG 1 cut(s) 833
BseXI GCAGC 7 cut(s) 89, 92, 128, 131, 170, 209, 254
BseYI CCCAGC 2 cut(s) 61, 238
BshFI GGCC 3 cut(s) 5, 572, 679
BsiSI CCGG 3 cut(s) 155, 194, 879
BslFI GGGAC 1 cut(s) 570
BsmFI GGGAC 1 cut(s) 570
BsnI GGCC 3 cut(s) 5, 572, 679
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 4 cut(s) 561, 645, 770, 839
Bsp1720I GCTNAGC 2 cut(s) 201, 246
Bsp19I CCATGG 1 cut(s) 589
BspACI CCGC 7 cut(s) 50, 68, 128, 146, 230, 323, 377
BspANI GGCC 3 cut(s) 5, 572, 679
BspCNI CTCAG 2 cut(s) 113, 152
BspLI GGNNCC 2 cut(s) 14, 586
BspPI GGATC 1 cut(s) 778
BsrDI GCAATG 1 cut(s) 383
BsrFI RCCGGY 2 cut(s) 154, 878
BsrGI TGTACA 1 cut(s) 334
BssAI RCCGGY 2 cut(s) 154, 878
BssECI CCNNGG 2 cut(s) 531, 589
BssMI GATC 4 cut(s) 561, 645, 770, 839
BssT1I CCWWGG 2 cut(s) 531, 589
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 506
BstAPI GCANNNNNTGC 1 cut(s) 470
BstAUI TGTACA 1 cut(s) 334
BstDEI CTNAG 4 cut(s) 100, 139, 201, 246
BstDSI CCRYGG 1 cut(s) 589
BstF5I GGATG 2 cut(s) 233, 628
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 4 cut(s) 564, 648, 773, 842
BstMBI GATC 4 cut(s) 561, 645, 770, 839
BstMWI GCNNNNNNNGC 2 cut(s) 385, 470
BstV1I GCAGC 7 cut(s) 89, 92, 128, 131, 170, 209, 254
BstX2I RGATCY 1 cut(s) 839
BstYI RGATCY 1 cut(s) 839
BsuRI GGCC 3 cut(s) 5, 572, 679
BtgI CCRYGG 1 cut(s) 589
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 2 cut(s) 233, 628
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 350
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 2 cut(s) 154, 878
Cfr13I GGNCC 3 cut(s) 584, 593, 761
Csp6I GTAC 4 cut(s) 335, 516, 608, 869
CviAII CATG 7 cut(s) 332, 362, 590, 719, 731, 767, 809
CviQI GTAC 4 cut(s) 335, 516, 608, 869
DdeI CTNAG 4 cut(s) 100, 139, 201, 246
DpnI GATC 4 cut(s) 563, 647, 772, 841
DpnII GATC 4 cut(s) 561, 645, 770, 839
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
Eco130I CCWWGG 2 cut(s) 531, 589
Eco47I GGWCC 3 cut(s) 584, 593, 761
EcoO109I RGGNCCY 2 cut(s) 584, 761
EcoT14I CCWWGG 2 cut(s) 531, 589
ErhI CCWWGG 2 cut(s) 531, 589
FaeI CATG 7 cut(s) 335, 365, 593, 722, 734, 770, 812
FaqI GGGAC 1 cut(s) 570
FatI CATG 7 cut(s) 331, 361, 589, 718, 730, 766, 808
FauI CCCGC 1 cut(s) 153
FokI GGATG 2 cut(s) 220, 635
GlaI GCGC 1 cut(s) 66
GsaI CCCAGC 2 cut(s) 65, 242
GsuI CTGGAG 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 3 cut(s) 5, 572, 679
HapII CCGG 3 cut(s) 155, 194, 879
HhaI GCGC 1 cut(s) 67
Hin1II CATG 7 cut(s) 335, 365, 593, 722, 734, 770, 812
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 789
HindII GTYRAC 1 cut(s) 789
HinfI GANTC 1 cut(s) 406
HpaII CCGG 3 cut(s) 155, 194, 879
HphI GGTGA 5 cut(s) 50, 264, 401, 751, 851
Hpy166II GTNNAC 3 cut(s) 337, 789, 871
Hpy188I TCNGA 1 cut(s) 667
Hpy188III TCNNGA 2 cut(s) 496, 649
Hpy8I GTNNAC 3 cut(s) 337, 789, 871
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 6 cut(s) 402, 575, 690, 730, 740, 752
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4V TGCA 3 cut(s) 464, 473, 828
HpyF10VI GCNNNNNNNGC 2 cut(s) 385, 470
HpyF3I CTNAG 4 cut(s) 100, 139, 201, 246
Hsp92II CATG 7 cut(s) 335, 365, 593, 722, 734, 770, 812
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 4 cut(s) 561, 645, 770, 839
Lsp1109I GCAGC 7 cut(s) 89, 92, 128, 131, 170, 209, 254
MaeIII GTNAC 5 cut(s) 56, 95, 134, 270, 281
MalI GATC 4 cut(s) 563, 647, 772, 841
MboI GATC 4 cut(s) 561, 645, 770, 839
MboII GAAGA 6 cut(s) 448, 517, 520, 523, 571, 675
MfeI CAATTG 2 cut(s) 474, 792
MflI RGATCY 1 cut(s) 839
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 474, 792
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 3 cut(s) 636, 723, 813
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 3 cut(s) 155, 194, 879
MunI CAATTG 2 cut(s) 474, 792
MwoI GCNNNNNNNGC 2 cut(s) 385, 470
NcoI CCATGG 1 cut(s) 589
NdeII GATC 4 cut(s) 561, 645, 770, 839
NlaIII CATG 7 cut(s) 335, 365, 593, 722, 734, 770, 812
NlaIV GGNNCC 2 cut(s) 14, 586
NmuCI GTSAC 5 cut(s) 56, 95, 134, 270, 281
PfeI GAWTC 1 cut(s) 406
PpuMI RGGWCCY 2 cut(s) 584, 761
Psp5II RGGWCCY 2 cut(s) 584, 761
PspFI CCCAGC 2 cut(s) 61, 238
PspN4I GGNNCC 2 cut(s) 14, 586
PspPI GGNCC 3 cut(s) 584, 593, 761
PspPPI RGGWCCY 2 cut(s) 584, 761
PsuI RGATCY 1 cut(s) 839
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 4 cut(s) 336, 517, 609, 870
RsaNI GTAC 4 cut(s) 335, 516, 608, 869
RseI CAYNNNNRTG 3 cut(s) 636, 723, 813
Sau3AI GATC 4 cut(s) 561, 645, 770, 839
Sau96I GGNCC 3 cut(s) 584, 593, 761
ScaI AGTACT 1 cut(s) 517
SinI GGWCC 3 cut(s) 584, 593, 761
SmiMI CAYNNNNRTG 3 cut(s) 636, 723, 813
Sse9I AATT 2 cut(s) 474, 792
SsiI CCGC 7 cut(s) 50, 68, 128, 146, 230, 323, 377
StyI CCWWGG 2 cut(s) 531, 589
TaaI ACNGT 1 cut(s) 418
TaqI TCGA 4 cut(s) 287, 546, 686, 813
TasI AATT 2 cut(s) 474, 792
TatI WGTACW 2 cut(s) 334, 515
TauI GCSGC 3 cut(s) 52, 70, 130
TfiI GAWTC 1 cut(s) 406
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 5 cut(s) 56, 95, 134, 270, 281
TseI GCWGC 7 cut(s) 77, 80, 116, 119, 158, 197, 242
Tsp45I GTSAC 5 cut(s) 56, 95, 134, 270, 281
TspDTI ATGAA 7 cut(s) 424, 481, 530, 620, 707, 741, 797
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 1 cut(s) 357
VpaK11BI GGWCC 3 cut(s) 584, 593, 761
ZrmI AGTACT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.