Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013267

Physical Location & Seq

Genomic Coordinates Reverse (-)

991600 .. 992749

Gene Structure 1150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g00920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGGAAGTGTTTTCCAATGCAAACAAACCCCTTTCCTTCCCAATGGGCATTCAGATTCACCACCTTCTCCACAACAATTCAATTTTCGTCTACCACATTACAGACTTAATTTACAATATAAGATGGCCAATCCAAATACAACTCCACCACCAACTTCAGCAGCAAAGCCGCCAAGTTACTCAACCCCACCACCACCGTCCCCGGGGGCAAAGCCTCCAAGTCACTCAACCCCACCGCCAACTCCATCAGCAAAACCACCAAGTCAATCAACCCCACCACCACCTCTGGCTGCGAAGCCACCACGTCCGTCAATCCCACCGCCACCTCCGTCAACAAAGCCGCCACGTCCATCAATCCCACCACCACCACCACCTCCGGCTGCGAAGCCACCACCTCCGTCAATCCCACCGCCACCTCCGTCAGCAAAGCCGCCACGTCCATCAATCCCACCACCACCACCCCCGGGGGCAAAACCTCCAAGCCCCTCAACCCCACCGCCACCACCATATCAACCATTTAGGCCACCGCCCCCACCTCATGTACATCCTCCGCCACCGCAGCTGCCACCACCATCCCCATCACCGGACAATAATCCCACCGTCATAGTCATTGTGTTCATCTCATTCGGTTCTGTTTTCTTCCTTGCATTCCTTGCAGTTTCCCTGCTTTGTTTCATCAAGAGGAGAAAGAAGAAGACAATCCAAGAAACCAACTTCATTCACATTGACAAACACCGGAAGATGAAGGAAGCAATTGTAGAAGGTCCCAACGGACCGCAAGCCGTGGTGTTGTCGGTCGAGGATGATGTCCACGTCGACGAGGAGATAAGGAAGAATGAGACAATTGCTCACGAGGGGTTGCATGGAGAAGTAAAGAGTTCAGATGTCCAGTCGGATACTGAAATCATTAACGTCGGCGAACATCGGAACGTGAAGGAAGACATAGAAGGTCCGCATGGATCGAAAGCTGTGGTGTTAACAGTCAAAGACGATGTTCATATCGATGAAATAATAAGGAAGAACGAGAAGGTTGGTAAAGGTTTGCATGGCAATGCAGAGGCAGTGAAAATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

38.43

Weight (kDa)

9.44

Isoelectric Point (pI)

70.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43790
fragaria_vesca	FvH4_2g14670
malus_domestica	MD05G1014900.v1.1 MD10G1014900.v1.1
prunus_persica	Prupe.8G018800_v2.0.a1
pyrus_communis	pycom05g00820 pycom10g00920
rosa_chinensis	RchiOBHm_Chr6g0277141
rosa_laevigata	RLG00000013328
rosa_multiflora	Rmu_sc0003539.1_g000022 Rmu_sc0006244.1_g000041
rosa_roxburghii	Rroxscaffold_7G00191570
rosa_rugosa	Rorug06G0106500
rosa_samantha	Rh6AG217300 Rh6BG221300 Rh6CG224200 Rh6DG213900
rosa_wichuraiana	Rw6G018970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	91, 816
AclWI	GGATC	1 cut(s)	967
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	543
AfiI	CCNNNNNNNGG	3 cut(s)	203, 464, 583
AgsI	TTSAA	1 cut(s)	82
AjiI	CACGTC	4 cut(s)	305, 347, 437, 814
AluBI	AGCT	2 cut(s)	562, 968
AluI	AGCT	2 cut(s)	562, 968
Alw26I	GTCTC	1 cut(s)	833
AlwI	GGATC	1 cut(s)	967
Ama87I	CYCGRG	2 cut(s)	202, 463
AoxI	GGCC	2 cut(s)	126, 521
ApeKI	GCWGC	5 cut(s)	161, 290, 380, 559, 562
AspS9I	GGNCC	3 cut(s)	764, 773, 950
AsuC2I	CCSGG	4 cut(s)	203, 204, 464, 465
AsuHPI	GGTGA	2 cut(s)	51, 573
AvaI	CYCGRG	2 cut(s)	202, 463
AvaII	GGWCC	3 cut(s)	764, 773, 950
BalI	TGGCCA	1 cut(s)	128
BauI	CACGAG	1 cut(s)	851
BbsI	GAAGAC	2 cut(s)	701, 945
BbvI	GCAGC	5 cut(s)	173, 277, 367, 549, 571
BccI	CCATC	6 cut(s)	118, 253, 358, 448, 580, 586
BceAI	ACGGC	1 cut(s)	767
BciVI	GTATCC	1 cut(s)	889
BcnI	CCSGG	4 cut(s)	203, 204, 464, 465
BcoDI	GTCTC	1 cut(s)	833
BfuI	GTATCC	1 cut(s)	889
BisI	GCNGC	8 cut(s)	162, 170, 291, 341, 381, 431, 560, 563
BlsI	GCNGC	8 cut(s)	163, 171, 292, 342, 382, 432, 561, 564
Bme1390I	CCNGG	4 cut(s)	203, 204, 464, 465
Bme18I	GGWCC	3 cut(s)	764, 773, 950
BmeT110I	CYCGRG	2 cut(s)	202, 463
BmgBI	CACGTC	4 cut(s)	305, 347, 437, 814
BmgT120I	GGNCC	3 cut(s)	764, 773, 950
BmiI	GGNNCC	1 cut(s)	766
BmrFI	CCNGG	4 cut(s)	203, 204, 464, 465
BpiI	GAAGAC	2 cut(s)	701, 945
BpuMI	CCSGG	4 cut(s)	203, 204, 464, 465
Bsa29I	ATCGAT	1 cut(s)	1002
BsaJI	CCNNGG	7 cut(s)	201, 202, 203, 462, 463, 464, 783
BsaWI	WCCGGW	2 cut(s)	583, 735
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 464, 583
Bse1I	ACTGG	1 cut(s)	889
Bse3DI	GCAATG	1 cut(s)	1057
BseCI	ATCGAT	1 cut(s)	1002
BseDI	CCNNGG	7 cut(s)	201, 202, 203, 462, 463, 464, 783
BseGI	GGATG	3 cut(s)	544, 572, 808
BseLI	CCNNNNNNNGG	3 cut(s)	203, 464, 583
BseMI	GCAATG	1 cut(s)	1057
BseNI	ACTGG	1 cut(s)	889
BseRI	GAGGAG	2 cut(s)	697, 836
BseXI	GCAGC	5 cut(s)	173, 277, 367, 549, 571
Bsh1285I	CGRYCG	1 cut(s)	798
BshFI	GGCC	2 cut(s)	128, 523
BshVI	ATCGAT	1 cut(s)	1002
BsiEI	CGRYCG	1 cut(s)	798
BsiHKCI	CYCGRG	2 cut(s)	202, 463
BsiSI	CCGG	5 cut(s)	203, 377, 464, 584, 736
BslFI	GGGAC	2 cut(s)	184, 750
BslI	CCNNNNNNNGG	3 cut(s)	203, 464, 583
BsmAI	GTCTC	1 cut(s)	833
BsmFI	GGGAC	2 cut(s)	184, 750
BsmI	GAATGC	2 cut(s)	49, 647
BsnI	GGCC	2 cut(s)	128, 523
BsoBI	CYCGRG	2 cut(s)	202, 463
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	1 cut(s)	959
BspANI	GGCC	2 cut(s)	128, 523
BspDI	ATCGAT	1 cut(s)	1002
BspLI	GGNNCC	1 cut(s)	766
BspPI	GGATC	1 cut(s)	967
BsrDI	GCAATG	1 cut(s)	1057
BsrGI	TGTACA	1 cut(s)	541
BsrI	ACTGG	1 cut(s)	889
BssECI	CCNNGG	7 cut(s)	201, 202, 203, 462, 463, 464, 783
BssMI	GATC	1 cut(s)	959
BssSI	CACGAG	1 cut(s)	851
Bst2BI	CACGAG	1 cut(s)	851
Bst4CI	ACNGT	3 cut(s)	198, 601, 982
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstAUI	TGTACA	1 cut(s)	541
BstC8I	GCNNGC	1 cut(s)	780
BstDSI	CCRYGG	1 cut(s)	783
BstF5I	GGATG	3 cut(s)	544, 572, 808
BstKTI	GATC	1 cut(s)	962
BstMAI	GTCTC	1 cut(s)	833
BstMBI	GATC	1 cut(s)	959
BstMCI	CGRYCG	1 cut(s)	798
BstMWI	GCNNNNNNNGC	2 cut(s)	559, 653
BstSCI	CCNGG	4 cut(s)	201, 202, 462, 463
BstV1I	GCAGC	5 cut(s)	173, 277, 367, 549, 571
BstV2I	GAAGAC	2 cut(s)	701, 945
Bsu15I	ATCGAT	1 cut(s)	1002
BsuI	GTATCC	1 cut(s)	889
BsuRI	GGCC	2 cut(s)	128, 523
BsuTUI	ATCGAT	1 cut(s)	1002
BtgI	CCRYGG	1 cut(s)	783
BtrI	CACGTC	4 cut(s)	305, 347, 437, 814
BtsCI	GGATG	3 cut(s)	544, 572, 808
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	1 cut(s)	1068
Cac8I	GCNNGC	1 cut(s)	780
Cfr13I	GGNCC	3 cut(s)	764, 773, 950
Cfr9I	CCCGGG	2 cut(s)	202, 463
ClaI	ATCGAT	1 cut(s)	1002
CpoI	CGGWCCG	1 cut(s)	773
Csp6I	GTAC	1 cut(s)	542
CspI	CGGWCCG	1 cut(s)	773
CviAII	CATG	4 cut(s)	539, 863, 956, 1046
CviQI	GTAC	1 cut(s)	542
DpnI	GATC	1 cut(s)	961
DpnII	GATC	1 cut(s)	959
EaeI	YGGCCR	1 cut(s)	126
EciI	GGCGGA	1 cut(s)	540
Eco47I	GGWCC	3 cut(s)	764, 773, 950
Eco57I	CTGAAG	1 cut(s)	141
Eco88I	CYCGRG	2 cut(s)	202, 463
EcoO109I	RGGNCCY	1 cut(s)	764
FaeI	CATG	4 cut(s)	542, 866, 959, 1049
FaiI	YATR	9 cut(s)	120, 508, 540, 605, 864, 944, 957, 999, 1047
FaqI	GGGAC	2 cut(s)	184, 750
FatI	CATG	4 cut(s)	538, 862, 955, 1045
FblI	GTMKAC	2 cut(s)	91, 816
Fnu4HI	GCNGC	8 cut(s)	162, 170, 291, 341, 381, 431, 560, 563
FokI	GGATG	3 cut(s)	531, 559, 815
Fsp4HI	GCNGC	8 cut(s)	162, 170, 291, 341, 381, 431, 560, 563
GluI	GCNGC	8 cut(s)	162, 170, 291, 341, 381, 431, 560, 563
HaeIII	GGCC	2 cut(s)	128, 523
HapII	CCGG	5 cut(s)	203, 377, 464, 584, 736
Hin1II	CATG	4 cut(s)	542, 866, 959, 1049
HincII	GTYRAC	3 cut(s)	333, 817, 978
HindII	GTYRAC	3 cut(s)	333, 817, 978
HinfI	GANTC	1 cut(s)	56
HpaI	GTTAAC	1 cut(s)	978
HpaII	CCGG	5 cut(s)	203, 377, 464, 584, 736
HphI	GGTGA	2 cut(s)	51, 573
Hpy166II	GTNNAC	5 cut(s)	92, 333, 811, 817, 978
Hpy188I	TCNGA	4 cut(s)	55, 883, 895, 927
Hpy188III	TCNNGA	2 cut(s)	679, 851
Hpy8I	GTNNAC	5 cut(s)	92, 333, 811, 817, 978
Hpy99I	CGWCG	3 cut(s)	818, 821, 917
HpyAV	CCTTC	7 cut(s)	47, 75, 739, 755, 928, 941, 1021
HpyCH4III	ACNGT	3 cut(s)	198, 601, 982
HpyCH4IV	ACGT	6 cut(s)	304, 346, 436, 813, 912, 930
HpyCH4V	TGCA	6 cut(s)	21, 647, 656, 862, 1045, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	559, 653
HpySE526I	ACGT	6 cut(s)	304, 346, 436, 813, 912, 930
Hsp92II	CATG	4 cut(s)	542, 866, 959, 1049
KspAI	GTTAAC	1 cut(s)	978
Kzo9I	GATC	1 cut(s)	959
LpnPI	CCDG	8 cut(s)	216, 272, 390, 477, 597, 677, 749, 902
Lsp1109I	GCAGC	5 cut(s)	173, 277, 367, 549, 571
MaeII	ACGT	6 cut(s)	304, 346, 436, 813, 912, 930
MaeIII	GTNAC	2 cut(s)	176, 221
MalI	GATC	1 cut(s)	961
MboI	GATC	1 cut(s)	959
MboII	GAAGA	7 cut(s)	631, 703, 706, 751, 844, 950, 1030
MfeI	CAATTG	2 cut(s)	753, 843
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	6 cut(s)	77, 82, 109, 753, 843, 1068
MluNI	TGGCCA	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	873
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	3 cut(s)	108, 909, 977
MslI	CAYNNNNRTG	2 cut(s)	1002, 1050
Msp20I	TGGCCA	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	5 cut(s)	203, 377, 464, 584, 736
MspR9I	CCNGG	4 cut(s)	203, 204, 464, 465
MunI	CAATTG	2 cut(s)	753, 843
Mva1269I	GAATGC	2 cut(s)	49, 647
MwoI	GCNNNNNNNGC	2 cut(s)	559, 653
NciI	CCSGG	4 cut(s)	203, 204, 464, 465
NdeII	GATC	1 cut(s)	959
NlaIII	CATG	4 cut(s)	542, 866, 959, 1049
NlaIV	GGNNCC	1 cut(s)	766
NmuCI	GTSAC	1 cut(s)	221
PctI	GAATGC	2 cut(s)	49, 647
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	8 cut(s)	163, 171, 292, 342, 382, 432, 561, 564
PpuMI	RGGWCCY	1 cut(s)	764
Psp5II	RGGWCCY	1 cut(s)	764
PspN4I	GGNNCC	1 cut(s)	766
PspPI	GGNCC	3 cut(s)	764, 773, 950
PspPPI	RGGWCCY	1 cut(s)	764
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
RseI	CAYNNNNRTG	2 cut(s)	1002, 1050
Rsr2I	CGGWCCG	1 cut(s)	773
RsrII	CGGWCCG	1 cut(s)	773
SalI	GTCGAC	1 cut(s)	815
SaqAI	TTAA	3 cut(s)	108, 909, 977
SatI	GCNGC	8 cut(s)	162, 170, 291, 341, 381, 431, 560, 563
Sau3AI	GATC	1 cut(s)	959
Sau96I	GGNCC	3 cut(s)	764, 773, 950
ScrFI	CCNGG	4 cut(s)	203, 204, 464, 465
SgrDI	CGTCGACG	1 cut(s)	815
SinI	GGWCC	3 cut(s)	764, 773, 950
SmaI	CCCGGG	2 cut(s)	204, 465
SmiMI	CAYNNNNRTG	2 cut(s)	1002, 1050
Sse9I	AATT	6 cut(s)	77, 82, 109, 753, 843, 1068
StyD4I	CCNGG	4 cut(s)	201, 202, 462, 463
TaaI	ACNGT	3 cut(s)	198, 601, 982
TaiI	ACGT	6 cut(s)	307, 349, 439, 816, 915, 933
TaqI	TCGA	4 cut(s)	798, 816, 962, 1002
TaqII	GACCGA	1 cut(s)	784
TasI	AATT	6 cut(s)	77, 82, 109, 753, 843, 1068
TatI	WGTACW	1 cut(s)	541
TauI	GCSGC	3 cut(s)	172, 343, 433
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	3 cut(s)	108, 909, 977
Tru9I	TTAA	3 cut(s)	108, 909, 977
TscAI	CASTG	1 cut(s)	1068
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	5 cut(s)	161, 290, 380, 559, 562
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	6 cut(s)	607, 664, 706, 758, 986, 1020
TspGWI	ACGGA	5 cut(s)	297, 318, 387, 408, 786
TspMI	CCCGGG	2 cut(s)	202, 463
TspRI	CASTG	1 cut(s)	1068
VpaK11BI	GGWCC	3 cut(s)	764, 773, 950
XmaI	CCCGGG	2 cut(s)	202, 463
XmiI	GTMKAC	2 cut(s)	91, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.