Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006244.1

Orthogroup ID

OG0013267

Physical Location & Seq

Genomic Coordinates Reverse (-)

155259 .. 156131

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006244.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atggccattcggttcccatatttccctccaccacctccagctgtaaagccgccaagtcacccagcgccgccaccaccggcagcaaagccgccgagtcactcagccccgccaccaccagcagtaaagccaccaagtcactcagccccaccaccaccaccagcaaagccgccaagtcactcagccccgccaccaccggcagcaaagcccccaagccactcaaccccaccacctccggcagctaagccaccaagcccctcaaccccaccaccaccaagtcactcgaccccaccaccaccacatcagccatttagcccaccgccacctcatgtacacccaccaccagcactgccaccccatgtagccccaccattgccaccttctccatcgccgaatcaccccaccgtcataatcattatattcatctcatttggttctgttttcttccttgcatttcttgcaattgctctatgttgtttcatcaagaaaaagaagaagaagagtactatccaagaaaccaaggtcattcatttcgacgaacataggaagatcaaggaggccatagtagaaggtccccatggaccacaagctgtggtactatcagttgaggatgacgttcatatagatgaggcgatcaagaaaaatgaaaaatctgataagagatggccttcttcgagttcaaatgtccaagaaactgattttattcatgttgatgaacatgagaaggtgaaagaaggcattgtagaaggtcctcatggatcaaaagctatgctgttgacaattgacgatgatattcatgtcgatgaggagatatgcaagaacgagagatctggtaaagatggtcatcaccatctggtacacaaggccggtctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

31.07

Weight (kDa)

8.36

Isoelectric Point (pI)

69.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43790
fragaria_vesca	FvH4_2g14670
malus_domestica	MD05G1014900.v1.1 MD10G1014900.v1.1
prunus_persica	Prupe.8G018800_v2.0.a1
pyrus_communis	pycom05g00820 pycom10g00920
rosa_chinensis	RchiOBHm_Chr6g0277141
rosa_laevigata	RLG00000013328
rosa_multiflora	Rmu_sc0003539.1_g000022 Rmu_sc0006244.1_g000041
rosa_roxburghii	Rroxscaffold_7G00191570
rosa_rugosa	Rorug06G0106500
rosa_samantha	Rh6AG217300 Rh6BG221300 Rh6CG224200 Rh6DG213900
rosa_wichuraiana	Rw6G018970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	50, 68, 89, 107, 167, 185, 317
AclWI	GGATC	1 cut(s)	763
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	4 cut(s)	330, 502, 594, 855
AgsI	TTSAA	1 cut(s)	678
AluBI	AGCT	4 cut(s)	41, 239, 587, 764
AluI	AGCT	4 cut(s)	41, 239, 587, 764
AlwI	GGATC	1 cut(s)	763
AoxI	GGCC	4 cut(s)	3, 555, 662, 861
ApeKI	GCWGC	3 cut(s)	80, 197, 236
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	3 cut(s)	569, 578, 746
AsuHPI	GGTGA	4 cut(s)	50, 386, 736, 836
AvaII	GGWCC	3 cut(s)	569, 578, 746
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	3 cut(s)	92, 209, 248
BccI	CCATC	4 cut(s)	391, 654, 830, 855
BfoI	RGCGCY	1 cut(s)	68
BglII	AGATCT	1 cut(s)	824
BisI	GCNGC	7 cut(s)	50, 68, 81, 89, 167, 198, 237
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	7 cut(s)	51, 69, 82, 90, 168, 199, 238
BmcAI	AGTACT	1 cut(s)	502
Bme18I	GGWCC	3 cut(s)	569, 578, 746
BmgT120I	GGNCC	3 cut(s)	569, 578, 746
BmiI	GGNNCC	2 cut(s)	14, 571
BpmI	CTGGAG	1 cut(s)	21
Bpu1102I	GCTNAGC	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	840
BsaJI	CCNNGG	2 cut(s)	516, 574
Bse118I	RCCGGY	3 cut(s)	76, 193, 863
Bse3DI	GCAATG	1 cut(s)	368
Bse8I	GATNNNNATC	1 cut(s)	840
BseDI	CCNNGG	2 cut(s)	516, 574
BseGI	GGATG	1 cut(s)	613
BseJI	GATNNNNATC	1 cut(s)	840
BseMI	GCAATG	1 cut(s)	368
BseMII	CTCAG	3 cut(s)	114, 153, 192
BseRI	GAGGAG	1 cut(s)	818
BseXI	GCAGC	3 cut(s)	92, 209, 248
BseYI	CCCAGC	1 cut(s)	61
BshFI	GGCC	4 cut(s)	5, 557, 664, 863
BsiSI	CCGG	4 cut(s)	77, 194, 233, 864
BslFI	GGGAC	1 cut(s)	555
BsmFI	GGGAC	1 cut(s)	555
BsnI	GGCC	4 cut(s)	5, 557, 664, 863
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	4 cut(s)	546, 630, 755, 824
Bsp1720I	GCTNAGC	1 cut(s)	240
Bsp19I	CCATGG	1 cut(s)	574
BspACI	CCGC	7 cut(s)	50, 68, 89, 107, 167, 185, 317
BspANI	GGCC	4 cut(s)	5, 557, 664, 863
BspCNI	CTCAG	3 cut(s)	113, 152, 191
BspLI	GGNNCC	2 cut(s)	14, 571
BspPI	GGATC	1 cut(s)	763
BsrDI	GCAATG	1 cut(s)	368
BsrFI	RCCGGY	3 cut(s)	76, 193, 863
BsrGI	TGTACA	1 cut(s)	328
BssAI	RCCGGY	3 cut(s)	76, 193, 863
BssECI	CCNNGG	2 cut(s)	516, 574
BssMI	GATC	4 cut(s)	546, 630, 755, 824
BssT1I	CCWWGG	2 cut(s)	516, 574
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	491
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstAUI	TGTACA	1 cut(s)	328
BstDEI	CTNAG	4 cut(s)	100, 139, 178, 240
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	1 cut(s)	613
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	4 cut(s)	549, 633, 758, 827
BstMBI	GATC	4 cut(s)	546, 630, 755, 824
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstV1I	GCAGC	3 cut(s)	92, 209, 248
BstX2I	RGATCY	1 cut(s)	824
BstYI	RGATCY	1 cut(s)	824
BsuRI	GGCC	4 cut(s)	5, 557, 664, 863
BtgI	CCRYGG	1 cut(s)	574
BtgZI	GCGATG	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	613
BtsI	GCAGTG	1 cut(s)	344
BtsIMutI	CAGTG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	3 cut(s)	76, 193, 863
Cfr13I	GGNCC	3 cut(s)	569, 578, 746
Csp6I	GTAC	4 cut(s)	329, 501, 593, 854
CviAII	CATG	7 cut(s)	326, 356, 575, 704, 716, 752, 794
CviQI	GTAC	4 cut(s)	329, 501, 593, 854
DdeI	CTNAG	4 cut(s)	100, 139, 178, 240
DpnI	GATC	4 cut(s)	548, 632, 757, 826
DpnII	GATC	4 cut(s)	546, 630, 755, 824
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
Eco130I	CCWWGG	2 cut(s)	516, 574
Eco47I	GGWCC	3 cut(s)	569, 578, 746
EcoO109I	RGGNCCY	2 cut(s)	569, 746
EcoT14I	CCWWGG	2 cut(s)	516, 574
ErhI	CCWWGG	2 cut(s)	516, 574
FaeI	CATG	7 cut(s)	329, 359, 578, 707, 719, 755, 797
FaqI	GGGAC	1 cut(s)	555
FatI	CATG	7 cut(s)	325, 355, 574, 703, 715, 751, 793
FauI	CCCGC	2 cut(s)	114, 192
Fnu4HI	GCNGC	7 cut(s)	50, 68, 81, 89, 167, 198, 237
FokI	GGATG	1 cut(s)	620
Fsp4HI	GCNGC	7 cut(s)	50, 68, 81, 89, 167, 198, 237
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	7 cut(s)	50, 68, 81, 89, 167, 198, 237
GsaI	CCCAGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	21
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	4 cut(s)	5, 557, 664, 863
HapII	CCGG	4 cut(s)	77, 194, 233, 864
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	7 cut(s)	329, 359, 578, 707, 719, 755, 797
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	774
HindII	GTYRAC	1 cut(s)	774
HinfI	GANTC	2 cut(s)	94, 391
HpaII	CCGG	4 cut(s)	77, 194, 233, 864
HphI	GGTGA	4 cut(s)	50, 386, 736, 836
Hpy166II	GTNNAC	3 cut(s)	331, 774, 856
Hpy188I	TCNGA	1 cut(s)	652
Hpy188III	TCNNGA	2 cut(s)	481, 634
Hpy8I	GTNNAC	3 cut(s)	331, 774, 856
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	6 cut(s)	387, 560, 675, 715, 725, 737
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	3 cut(s)	449, 458, 813
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	4 cut(s)	100, 139, 178, 240
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	7 cut(s)	329, 359, 578, 707, 719, 755, 797
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	4 cut(s)	546, 630, 755, 824
Lsp1109I	GCAGC	3 cut(s)	92, 209, 248
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	5 cut(s)	56, 95, 134, 173, 275
MalI	GATC	4 cut(s)	548, 632, 757, 826
MboI	GATC	4 cut(s)	546, 630, 755, 824
MboII	GAAGA	6 cut(s)	433, 502, 505, 508, 556, 660
MfeI	CAATTG	2 cut(s)	459, 777
MflI	RGATCY	1 cut(s)	824
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	459, 777
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	103
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	3 cut(s)	621, 708, 798
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	4 cut(s)	77, 194, 233, 864
MunI	CAATTG	2 cut(s)	459, 777
MwoI	GCNNNNNNNGC	1 cut(s)	455
NcoI	CCATGG	1 cut(s)	574
NdeII	GATC	4 cut(s)	546, 630, 755, 824
NlaIII	CATG	7 cut(s)	329, 359, 578, 707, 719, 755, 797
NlaIV	GGNNCC	2 cut(s)	14, 571
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	5 cut(s)	56, 95, 134, 173, 275
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	7 cut(s)	51, 69, 82, 90, 168, 199, 238
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PpuMI	RGGWCCY	2 cut(s)	569, 746
Psp5II	RGGWCCY	2 cut(s)	569, 746
PspFI	CCCAGC	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	14, 571
PspPI	GGNCC	3 cut(s)	569, 578, 746
PspPPI	RGGWCCY	2 cut(s)	569, 746
PsuI	RGATCY	1 cut(s)	824
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	4 cut(s)	330, 502, 594, 855
RsaNI	GTAC	4 cut(s)	329, 501, 593, 854
RseI	CAYNNNNRTG	3 cut(s)	621, 708, 798
SatI	GCNGC	7 cut(s)	50, 68, 81, 89, 167, 198, 237
Sau3AI	GATC	4 cut(s)	546, 630, 755, 824
Sau96I	GGNCC	3 cut(s)	569, 578, 746
ScaI	AGTACT	1 cut(s)	502
SchI	GAGTC	1 cut(s)	103
SinI	GGWCC	3 cut(s)	569, 578, 746
SmiMI	CAYNNNNRTG	3 cut(s)	621, 708, 798
Sse9I	AATT	2 cut(s)	459, 777
SsiI	CCGC	7 cut(s)	50, 68, 89, 107, 167, 185, 317
StyI	CCWWGG	2 cut(s)	516, 574
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	4 cut(s)	281, 531, 671, 798
TasI	AATT	2 cut(s)	459, 777
TatI	WGTACW	2 cut(s)	328, 500
TauI	GCSGC	4 cut(s)	52, 70, 91, 169
TfiI	GAWTC	1 cut(s)	391
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	5 cut(s)	56, 95, 134, 173, 275
TseI	GCWGC	3 cut(s)	80, 197, 236
Tsp45I	GTSAC	5 cut(s)	56, 95, 134, 173, 275
TspDTI	ATGAA	8 cut(s)	409, 466, 515, 605, 657, 692, 726, 782
TspRI	CASTG	1 cut(s)	351
VpaK11BI	GGWCC	3 cut(s)	569, 578, 746
ZrmI	AGTACT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.