Rh6DG213900

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013267
Physical Location & Seq
Forward (+)
38158192 .. 38159423
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG213900.1

Sequence Viewer

Length: 882 bp
ATGGCCATTCGGTTCCCATATTTCCCTCCACCACCTCCAGCTGTAAAGCCGCCAAGTCACCCAGCGCCGCCACCACCAGCAGCAAAGCCGCCGAGTCACTCAGCCCCGCCACCACCAGCAGCAAAGCCACCAAGTCACTCAGCCCCACCACCACCAGCAGCAAAGCCGCCAAGTCACTCAGCCCCGCCACCACCGGCAGCAAAGCCCCCAAGCCACTCAACCCCACCGCCTCCGGCAGCTAAGCCACCAAGCCCCTCAACTCCGCCACCACCAAGTCACTCGACCCCACCACCACCACATCAGCCATTTAGCCCACCGCCACCTCATGTACACCCACCACCAGCACTGCCACCCCATGTAGCCCCACCACCGCCACCATTGCCACCTTCTCCATCGCCGAATCACCCCACCGTCATAATCATTATATGCATCTCATTTGGTTCTGTTTTCTTCCTTGCATTTCTTGCAATTGCTCTATGTTGTTTCATCAAGAAAAAGAAGAAGAAGAGTACTATCCGAGAAACCGAAGTCATTCATTTCGACGAACATAGGAAGATCAAGGAGGCCATAGTAGAAGGTCCCCATGGACCACAAGCTGTGGTACTATCAGTTGAGGATGATGTTCATATAGATGAGGCGATCAGGAAAAATGAGAAATCTGATAAGAGATGGCCTTCTTCGAGTTCAAATGTCCAAGAAACTGATTTTATTCATGTTGATGAACATGAGAAGGTGAAAGAAGGCATTGTAGAAGGTCCTCATGGATCAAAAGCTATGCTGTTGACAATTGACGATGATATTCATGTCGATGAGAAGATATGCAAGAACGAGAGATCTGGTAAAGAGGGTCATCACCATCTGGTACACAAGGCCGGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

31.33

Weight (kDa)

8.6

Isoelectric Point (pI)

69.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43790
fragaria_vesca FvH4_2g14670
malus_domestica MD05G1014900.v1.1 MD10G1014900.v1.1
prunus_persica Prupe.8G018800_v2.0.a1
pyrus_communis pycom05g00820 pycom10g00920
rosa_chinensis RchiOBHm_Chr6g0277141
rosa_laevigata RLG00000013328
rosa_multiflora Rmu_sc0003539.1_g000022 Rmu_sc0006244.1_g000041
rosa_roxburghii Rroxscaffold_7G00191570
rosa_rugosa Rorug06G0106500
rosa_samantha Rh6AG217300 Rh6BG221300 Rh6CG224200 Rh6DG213900
rosa_wichuraiana Rw6G018970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 772
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 4 cut(s) 330, 511, 603, 864
AgsI TTSAA 1 cut(s) 687
AluBI AGCT 4 cut(s) 41, 239, 596, 773
AluI AGCT 4 cut(s) 41, 239, 596, 773
AlwI GGATC 1 cut(s) 772
AoxI GGCC 4 cut(s) 3, 564, 671, 870
ApeKI GCWGC 5 cut(s) 80, 119, 158, 197, 236
Asp700I GAANNNNTTC 1 cut(s) 531
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 3 cut(s) 578, 587, 755
AsuHPI GGTGA 4 cut(s) 50, 395, 745, 845
AvaII GGWCC 3 cut(s) 578, 587, 755
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 5 cut(s) 92, 131, 170, 209, 248
BccI CCATC 3 cut(s) 400, 663, 864
BfoI RGCGCY 1 cut(s) 68
BglII AGATCT 1 cut(s) 833
BisI GCNGC 9 cut(s) 50, 68, 81, 89, 120, 159, 167, 198, 237
BlpI GCTNAGC 1 cut(s) 240
BlsI GCNGC 9 cut(s) 51, 69, 82, 90, 121, 160, 168, 199, 238
BmcAI AGTACT 1 cut(s) 511
Bme18I GGWCC 3 cut(s) 578, 587, 755
BmgT120I GGNCC 3 cut(s) 578, 587, 755
BmiI GGNNCC 2 cut(s) 14, 580
BmsI GCATC 1 cut(s) 438
BpmI CTGGAG 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 583
Bse118I RCCGGY 2 cut(s) 193, 872
Bse3DI GCAATG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 583
BseGI GGATG 1 cut(s) 622
BseMI GCAATG 1 cut(s) 377
BseMII CTCAG 3 cut(s) 114, 153, 192
BseXI GCAGC 5 cut(s) 92, 131, 170, 209, 248
BseYI CCCAGC 1 cut(s) 61
BshFI GGCC 4 cut(s) 5, 566, 673, 872
BsiSI CCGG 3 cut(s) 194, 233, 873
BslFI GGGAC 1 cut(s) 564
BsmFI GGGAC 1 cut(s) 564
BsnI GGCC 4 cut(s) 5, 566, 673, 872
Bsp1407I TGTACA 1 cut(s) 328
Bsp143I GATC 4 cut(s) 555, 639, 764, 833
Bsp1720I GCTNAGC 1 cut(s) 240
Bsp19I CCATGG 1 cut(s) 583
BspANI GGCC 4 cut(s) 5, 566, 673, 872
BspCNI CTCAG 3 cut(s) 113, 152, 191
BspLI GGNNCC 2 cut(s) 14, 580
BspPI GGATC 1 cut(s) 772
BsrDI GCAATG 1 cut(s) 377
BsrFI RCCGGY 2 cut(s) 193, 872
BsrGI TGTACA 1 cut(s) 328
BssAI RCCGGY 2 cut(s) 193, 872
BssECI CCNNGG 1 cut(s) 583
BssMI GATC 4 cut(s) 555, 639, 764, 833
BssT1I CCWWGG 1 cut(s) 583
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 500
BstAPI GCANNNNNTGC 1 cut(s) 464
BstAUI TGTACA 1 cut(s) 328
BstDEI CTNAG 4 cut(s) 100, 139, 178, 240
BstDSI CCRYGG 1 cut(s) 583
BstF5I GGATG 1 cut(s) 622
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 4 cut(s) 558, 642, 767, 836
BstMBI GATC 4 cut(s) 555, 639, 764, 833
BstMWI GCNNNNNNNGC 2 cut(s) 379, 464
BstV1I GCAGC 5 cut(s) 92, 131, 170, 209, 248
BstX2I RGATCY 1 cut(s) 833
BstYI RGATCY 1 cut(s) 833
BsuRI GGCC 4 cut(s) 5, 566, 673, 872
BtgI CCRYGG 1 cut(s) 583
BtgZI GCGATG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 622
BtsI GCAGTG 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 344
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 2 cut(s) 193, 872
Cfr13I GGNCC 3 cut(s) 578, 587, 755
Csp6I GTAC 4 cut(s) 329, 510, 602, 863
CviAII CATG 7 cut(s) 326, 356, 584, 713, 725, 761, 803
CviQI GTAC 4 cut(s) 329, 510, 602, 863
DdeI CTNAG 4 cut(s) 100, 139, 178, 240
DpnI GATC 4 cut(s) 557, 641, 766, 835
DpnII GATC 4 cut(s) 555, 639, 764, 833
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 500
EarI CTCTTC 1 cut(s) 500
EciI GGCGGA 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 583
Eco47I GGWCC 3 cut(s) 578, 587, 755
EcoO109I RGGNCCY 2 cut(s) 578, 755
EcoT14I CCWWGG 1 cut(s) 583
EcoT22I ATGCAT 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 583
FaeI CATG 7 cut(s) 329, 359, 587, 716, 728, 764, 806
FaqI GGGAC 1 cut(s) 564
FatI CATG 7 cut(s) 325, 355, 583, 712, 724, 760, 802
FauI CCCGC 2 cut(s) 114, 192
Fnu4HI GCNGC 9 cut(s) 50, 68, 81, 89, 120, 159, 167, 198, 237
FokI GGATG 1 cut(s) 629
Fsp4HI GCNGC 9 cut(s) 50, 68, 81, 89, 120, 159, 167, 198, 237
GlaI GCGC 1 cut(s) 66
GluI GCNGC 9 cut(s) 50, 68, 81, 89, 120, 159, 167, 198, 237
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 4 cut(s) 5, 566, 673, 872
HapII CCGG 3 cut(s) 194, 233, 873
HhaI GCGC 1 cut(s) 67
Hin1II CATG 7 cut(s) 329, 359, 587, 716, 728, 764, 806
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 783
HindII GTYRAC 1 cut(s) 783
HinfI GANTC 2 cut(s) 94, 400
HpaII CCGG 3 cut(s) 194, 233, 873
HphI GGTGA 4 cut(s) 50, 395, 745, 845
Hpy166II GTNNAC 3 cut(s) 331, 783, 865
Hpy188I TCNGA 2 cut(s) 518, 661
Hpy188III TCNNGA 2 cut(s) 490, 643
Hpy8I GTNNAC 3 cut(s) 331, 783, 865
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 6 cut(s) 396, 569, 684, 724, 734, 746
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4V TGCA 4 cut(s) 429, 458, 467, 822
HpyF10VI GCNNNNNNNGC 2 cut(s) 379, 464
HpyF3I CTNAG 4 cut(s) 100, 139, 178, 240
Hsp92II CATG 7 cut(s) 329, 359, 587, 716, 728, 764, 806
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 4 cut(s) 555, 639, 764, 833
Lsp1109I GCAGC 5 cut(s) 92, 131, 170, 209, 248
LweI GCATC 1 cut(s) 438
MaeIII GTNAC 5 cut(s) 56, 95, 134, 173, 275
MalI GATC 4 cut(s) 557, 641, 766, 835
MboI GATC 4 cut(s) 555, 639, 764, 833
MboII GAAGA 7 cut(s) 442, 511, 514, 517, 565, 669, 826
MfeI CAATTG 2 cut(s) 468, 786
MflI RGATCY 1 cut(s) 833
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 468, 786
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 103
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 431
MroXI GAANNNNTTC 1 cut(s) 531
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 3 cut(s) 630, 717, 807
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 3 cut(s) 194, 233, 873
MunI CAATTG 2 cut(s) 468, 786
MwoI GCNNNNNNNGC 2 cut(s) 379, 464
NcoI CCATGG 1 cut(s) 583
NdeII GATC 4 cut(s) 555, 639, 764, 833
NlaIII CATG 7 cut(s) 329, 359, 587, 716, 728, 764, 806
NlaIV GGNNCC 2 cut(s) 14, 580
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 5 cut(s) 56, 95, 134, 173, 275
NsiI ATGCAT 1 cut(s) 431
PdmI GAANNNNTTC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 400
PkrI GCNGC 9 cut(s) 51, 69, 82, 90, 121, 160, 168, 199, 238
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PpuMI RGGWCCY 2 cut(s) 578, 755
Psp5II RGGWCCY 2 cut(s) 578, 755
PspFI CCCAGC 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 14, 580
PspPI GGNCC 3 cut(s) 578, 587, 755
PspPPI RGGWCCY 2 cut(s) 578, 755
PsuI RGATCY 1 cut(s) 833
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 4 cut(s) 330, 511, 603, 864
RsaNI GTAC 4 cut(s) 329, 510, 602, 863
RseI CAYNNNNRTG 3 cut(s) 630, 717, 807
SatI GCNGC 9 cut(s) 50, 68, 81, 89, 120, 159, 167, 198, 237
Sau3AI GATC 4 cut(s) 555, 639, 764, 833
Sau96I GGNCC 3 cut(s) 578, 587, 755
ScaI AGTACT 1 cut(s) 511
SchI GAGTC 1 cut(s) 103
SfaNI GCATC 1 cut(s) 438
SinI GGWCC 3 cut(s) 578, 587, 755
SmiMI CAYNNNNRTG 3 cut(s) 630, 717, 807
Sse9I AATT 2 cut(s) 468, 786
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 1 cut(s) 412
TaqI TCGA 4 cut(s) 281, 540, 680, 807
TasI AATT 2 cut(s) 468, 786
TatI WGTACW 2 cut(s) 328, 509
TauI GCSGC 4 cut(s) 52, 70, 91, 169
TfiI GAWTC 1 cut(s) 400
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 5 cut(s) 56, 95, 134, 173, 275
TseI GCWGC 5 cut(s) 80, 119, 158, 197, 236
Tsp45I GTSAC 5 cut(s) 56, 95, 134, 173, 275
TspDTI ATGAA 6 cut(s) 475, 524, 614, 701, 735, 791
TspRI CASTG 1 cut(s) 351
VpaK11BI GGWCC 3 cut(s) 578, 587, 755
XmnI GAANNNNTTC 1 cut(s) 531
ZrmI AGTACT 1 cut(s) 511
Zsp2I ATGCAT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.