MD05G1014900.v1.1

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013267
Physical Location & Seq
Reverse (-)
2782879 .. 2783859
981 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1014900.v1.1.491

Sequence Viewer

Length: 981 bp
ATGGCCAATCCAAATAGCTACTACTTCCCATTTTTCCCTCCACCACCTCCGTCCCCGGGGGCAAAGCCTCCAAGTCACTCAACCCCACCACCTCCATCAGCAAAACCACCAGGTCAATCGACCCCACCACTAACTCCGTCAGCAAGGCCGCCACGTCCATCAATCCCACCACCACCTCCGTCAGCAAAGCCTCCAAGTCACTCAACCCCACCACCACCTCCATCAGAAAAACCACCAAGTCAATCAACCCCACCGCCAACTCCGTCAGCAAAGCCACCACGTCCATCAATCCCACCACCACCACCCCCGGGGGCAAAGCCTCCAAGCCCCTCAACCCCATCACCACCACATAAGCCATTTATAATACCACCACCTCCACATCAGCCATTTAGGCCACCGCCCCCACCTCACGTACGCCCTCCGCCACCGCAATTGCCACCATCACCAACCCCGGACAATCATCCCACCGTCATAGTCATTGTGTTCATATCATTAGGTTCCGTTTTCTTCCTTGGATTCCTTGCAGTTGCCCTACTCTGTTGCATCAAGAGGAGAAAGAAAAAGACAATCCAAGAAACCGACTTCATTCACATCGACAAACACCGGAAGATCAAGGAAGCCATTGTCGAAGGTCCCAAGGGACCCCAAGCCGTGGTGTTGTCAGTTGAGGATGATGTCCATATCGACGAGGAGATAAGGAAGAATGAGACAATTAGTCACGAGGGTTTGCATGGAAAAGCAAAGAGTTCAGGTGTCCAATGGGAAACCGAAATCGTTAACGTCAACGAACATCGGAAGGTGAAGGAAGACATCGTAGAAGGTCTGCATGGGTCGAAAGCTGTGGTGTTGACAATTGACGACGATGTTCATATCGACGAAATAATAAGGAAGAACGAGAGGGTTGGTAAAGGTTTGCATGGCAATGCAGAGGCGGTGAAAATTGATGAGCCTTCAACGAGTTCACATATTGGTCAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

35.09

Weight (kDa)

9.23

Isoelectric Point (pI)

69.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43790
fragaria_vesca FvH4_2g14670
malus_domestica MD05G1014900.v1.1 MD10G1014900.v1.1
prunus_persica Prupe.8G018800_v2.0.a1
pyrus_communis pycom05g00820 pycom10g00920
rosa_chinensis RchiOBHm_Chr6g0277141
rosa_laevigata RLG00000013328
rosa_multiflora Rmu_sc0003539.1_g000022 Rmu_sc0006244.1_g000041
rosa_roxburghii Rroxscaffold_7G00191570
rosa_rugosa Rorug06G0106500
rosa_samantha Rh6AG217300 Rh6BG221300 Rh6CG224200 Rh6DG213900
rosa_wichuraiana Rw6G018970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 652
AciI CCGC 6 cut(s) 149, 254, 398, 422, 428, 932
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 3 cut(s) 56, 308, 652
AgsI TTSAA 1 cut(s) 954
AhdI GACNNNNNGTC 1 cut(s) 714
AjiI CACGTC 2 cut(s) 155, 281
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 2 cut(s) 18, 839
AluI AGCT 2 cut(s) 18, 839
Alw26I GTCTC 1 cut(s) 701
Ama87I CYCGRG 2 cut(s) 55, 307
AoxI GGCC 3 cut(s) 3, 146, 392
AspS9I GGNCC 2 cut(s) 632, 641
AsuC2I CCSGG 5 cut(s) 56, 57, 308, 309, 452
AsuHPI GGTGA 4 cut(s) 333, 435, 811, 946
AvaI CYCGRG 2 cut(s) 55, 307
AvaII GGWCC 2 cut(s) 632, 641
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 719
BbsI GAAGAC 1 cut(s) 813
BccI CCATC 6 cut(s) 103, 166, 229, 292, 346, 448
BceAI ACGGC 1 cut(s) 635
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 5 cut(s) 56, 57, 308, 309, 452
BcoDI GTCTC 1 cut(s) 701
BglI GCCNNNNNGGC 1 cut(s) 391
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme1390I CCNGG 6 cut(s) 56, 57, 111, 308, 309, 452
Bme18I GGWCC 2 cut(s) 632, 641
BmeRI GACNNNNNGTC 1 cut(s) 714
BmeT110I CYCGRG 2 cut(s) 55, 307
BmgBI CACGTC 2 cut(s) 155, 281
BmgT120I GGNCC 2 cut(s) 632, 641
BmiI GGNNCC 4 cut(s) 499, 634, 642, 643
BmrFI CCNGG 6 cut(s) 56, 57, 111, 308, 309, 452
BmsI GCATC 1 cut(s) 552
BpiI GAAGAC 1 cut(s) 813
BpuMI CCSGG 5 cut(s) 56, 57, 308, 309, 452
BsaAI YACGTR 1 cut(s) 412
BsaWI WCCGGW 1 cut(s) 603
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 308, 652
Bse3DI GCAATG 1 cut(s) 928
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 2 cut(s) 460, 676
BseLI CCNNNNNNNGG 3 cut(s) 56, 308, 652
BseMI GCAATG 1 cut(s) 928
BseRI GAGGAG 2 cut(s) 565, 704
BshFI GGCC 3 cut(s) 5, 148, 394
BsiHKCI CYCGRG 2 cut(s) 55, 307
BsiSI CCGG 4 cut(s) 56, 308, 452, 604
BsiWI CGTACG 1 cut(s) 412
BslFI GGGAC 3 cut(s) 37, 618, 654
BslI CCNNNNNNNGG 3 cut(s) 56, 308, 652
BsmAI GTCTC 1 cut(s) 701
BsmFI GGGAC 3 cut(s) 37, 618, 654
BsnI GGCC 3 cut(s) 5, 148, 394
BsoBI CYCGRG 2 cut(s) 55, 307
Bsp143I GATC 1 cut(s) 609
BspACI CCGC 6 cut(s) 149, 254, 398, 422, 428, 932
BspANI GGCC 3 cut(s) 5, 148, 394
BspLI GGNNCC 4 cut(s) 499, 634, 642, 643
BsrDI GCAATG 1 cut(s) 928
BssMI GATC 1 cut(s) 609
BssSI CACGAG 1 cut(s) 719
BssT1I CCWWGG 2 cut(s) 511, 636
Bst2BI CACGAG 1 cut(s) 719
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 469
BstBAI YACGTR 1 cut(s) 412
BstDSI CCRYGG 1 cut(s) 651
BstF5I GGATG 2 cut(s) 460, 676
BstKTI GATC 1 cut(s) 612
BstMAI GTCTC 1 cut(s) 701
BstMBI GATC 1 cut(s) 609
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 6 cut(s) 54, 55, 109, 306, 307, 450
BstV2I GAAGAC 1 cut(s) 813
BsuRI GGCC 3 cut(s) 5, 148, 394
BtgI CCRYGG 1 cut(s) 651
BtrI CACGTC 2 cut(s) 155, 281
BtsCI GGATG 2 cut(s) 460, 676
Cfr13I GGNCC 2 cut(s) 632, 641
Cfr9I CCCGGG 2 cut(s) 55, 307
CsiI ACCWGGT 1 cut(s) 109
Csp6I GTAC 1 cut(s) 413
CspCI CAANNNNNGTGG 2 cut(s) 414, 449
CviAII CATG 3 cut(s) 731, 827, 917
CviQI GTAC 1 cut(s) 413
DpnI GATC 1 cut(s) 611
DpnII GATC 1 cut(s) 609
DriI GACNNNNNGTC 1 cut(s) 714
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 714
EciI GGCGGA 1 cut(s) 411
Eco130I CCWWGG 2 cut(s) 511, 636
Eco47I GGWCC 2 cut(s) 632, 641
Eco88I CYCGRG 2 cut(s) 55, 307
EcoO109I RGGNCCY 2 cut(s) 632, 641
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 511, 636
ErhI CCWWGG 2 cut(s) 511, 636
FaeI CATG 3 cut(s) 734, 830, 920
FaqI GGGAC 3 cut(s) 37, 618, 654
FatI CATG 3 cut(s) 730, 826, 916
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 2 cut(s) 447, 683
Fsp4HI GCNGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 149
HaeIII GGCC 3 cut(s) 5, 148, 394
HapII CCGG 4 cut(s) 56, 308, 452, 604
Hin1II CATG 3 cut(s) 734, 830, 920
HincII GTYRAC 3 cut(s) 778, 784, 849
HindII GTYRAC 3 cut(s) 778, 784, 849
HinfI GANTC 1 cut(s) 516
HpaI GTTAAC 1 cut(s) 778
HpaII CCGG 4 cut(s) 56, 308, 452, 604
HphI GGTGA 4 cut(s) 333, 435, 811, 946
Hpy166II GTNNAC 4 cut(s) 778, 784, 849, 962
Hpy188I TCNGA 2 cut(s) 226, 795
Hpy188III TCNNGA 2 cut(s) 547, 719
Hpy8I GTNNAC 4 cut(s) 778, 784, 849, 962
Hpy99I CGWCG 3 cut(s) 689, 863, 878
HpyAV CCTTC 5 cut(s) 623, 790, 796, 812, 960
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 4 cut(s) 154, 280, 411, 780
HpyCH4V TGCA 6 cut(s) 524, 543, 730, 826, 916, 926
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpySE526I ACGT 4 cut(s) 154, 280, 411, 780
Hsp92II CATG 3 cut(s) 734, 830, 920
KflI GGGWCCC 1 cut(s) 641
KspAI GTTAAC 1 cut(s) 778
Kzo9I GATC 1 cut(s) 609
LpnPI CCDG 7 cut(s) 69, 96, 123, 321, 465, 617, 735
LweI GCATC 1 cut(s) 552
MabI ACCWGGT 1 cut(s) 109
MaeII ACGT 4 cut(s) 154, 280, 411, 780
MaeIII GTNAC 3 cut(s) 74, 197, 716
MalI GATC 1 cut(s) 611
MboI GATC 1 cut(s) 609
MboII GAAGA 5 cut(s) 499, 619, 712, 818, 901
MfeI CAATTG 2 cut(s) 431, 852
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 431, 711, 852, 939
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 777
MslI CAYNNNNRTG 1 cut(s) 921
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 56, 308, 452, 604
MspR9I CCNGG 6 cut(s) 56, 57, 111, 308, 309, 452
MunI CAATTG 2 cut(s) 431, 852
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 391
NciI CCSGG 5 cut(s) 56, 57, 308, 309, 452
NdeII GATC 1 cut(s) 609
NlaIII CATG 3 cut(s) 734, 830, 920
NlaIV GGNNCC 4 cut(s) 499, 634, 642, 643
NmuCI GTSAC 3 cut(s) 74, 197, 716
PfeI GAWTC 1 cut(s) 516
Pfl23II CGTACG 1 cut(s) 412
PflMI CCANNNNNTGG 1 cut(s) 652
PkrI GCNGC 1 cut(s) 150
Ppu21I YACGTR 1 cut(s) 412
PpuMI RGGWCCY 2 cut(s) 632, 641
PsiI TTATAA 1 cut(s) 362
Psp5II RGGWCCY 2 cut(s) 632, 641
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspLI CGTACG 1 cut(s) 412
PspN4I GGNNCC 4 cut(s) 499, 634, 642, 643
PspPI GGNCC 2 cut(s) 632, 641
PspPPI RGGWCCY 2 cut(s) 632, 641
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
RseI CAYNNNNRTG 1 cut(s) 921
SaqAI TTAA 1 cut(s) 777
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 1 cut(s) 609
Sau96I GGNCC 2 cut(s) 632, 641
ScrFI CCNGG 6 cut(s) 56, 57, 111, 308, 309, 452
SexAI ACCWGGT 1 cut(s) 109
SfaNI GCATC 1 cut(s) 552
SinI GGWCC 2 cut(s) 632, 641
SmaI CCCGGG 2 cut(s) 57, 309
SmiMI CAYNNNNRTG 1 cut(s) 921
Sse9I AATT 4 cut(s) 431, 711, 852, 939
SsiI CCGC 6 cut(s) 149, 254, 398, 422, 428, 932
StyD4I CCNGG 6 cut(s) 54, 55, 109, 306, 307, 450
StyI CCWWGG 2 cut(s) 511, 636
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 4 cut(s) 157, 283, 414, 783
TaqI TCGA 6 cut(s) 119, 594, 627, 684, 833, 873
TasI AATT 4 cut(s) 431, 711, 852, 939
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 1 cut(s) 516
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TseFI GTSAC 3 cut(s) 74, 197, 716
Tsp45I GTSAC 3 cut(s) 74, 197, 716
TspDTI ATGAA 3 cut(s) 475, 574, 857
TspGWI ACGGA 5 cut(s) 39, 126, 168, 252, 490
TspMI CCCGGG 2 cut(s) 55, 307
Van91I CCANNNNNTGG 1 cut(s) 652
VpaK11BI GGWCC 2 cut(s) 632, 641
XmaI CCCGGG 2 cut(s) 55, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.