Rh6BG221300

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013267
Physical Location & Seq
Forward (+)
41751066 .. 41752343
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG221300.1

Sequence Viewer

Length: 927 bp
ATGGCCATTCGGTTCCCATATTTCCCTCCACCACCTCCAGCTGTAAAGCCGCCAAGTCACCCAGCGCCGCCACCACCGGCAGCAAAGCCGCCGAGTCACTCAGCCCCGCCACCACCACCAGCAAACCCACCAAGTCACTCAGCCCCACCACCACCACCAGCAAAGCCGCCAAGTCACTCAGCCCCGCCACCACCGGCAGCAAAGCCCCCAAGCCACTCAACCCCACCACCTCCGGCAGCTAAGCCACCAAGCCCCTCAACCCCACCACCGCCATCCCCAGCAGCTAAGCCACCAAGCCCCCCAACTCCGCCACCACCAAGTCACTCGACCCCACCACCACCACATCAGCCATTTAGCCCACCGCCACCTCATGTACACCCACCACCAGCACTGCCACCCCATGTAGCCCCACCACCGCCACCATTGCCACCTTCTCCATCGCCGAATCACCCCACCGTCATAATCATTATATTCATCTCATTTGGTTCTGTTTTCTTCCTTGCATTTCTTGCAATTGCTCTATGTTGTTTCATCAAGAAAAAGAAGAAGAAGAGTACTATCCGAGAAACCGAAGTCATTCATTTCGACGAACATAGGAAGATCAAGGAGGCCATAGTAGAAGGTCCCCATGGACTACAAGCTGCGGTACTATCAGTTGAGGATGATGTTCATATAGATGAGGCGATCAGGAAAAATGAGAAATCTGATAAGAGATGGCCTTCTTCGAGTTCAAATGTCCAAGAAACTGATTTTATTCATGTTGATGAACATGAGAAGGTGAAAGAAGGCATTGTAGAAGGTCCTCATGGATCAAAAGCTATGCTGTTGACAATTGACGATGATATTCATGTCGATGAGGAGATATGCAAGAACGAGAGATCTGGTAAAGATGGTCATCACCATCTGGTACACAAGGCCGGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

32.81

Weight (kDa)

7.89

Isoelectric Point (pI)

77.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43790
fragaria_vesca FvH4_2g14670
malus_domestica MD05G1014900.v1.1 MD10G1014900.v1.1
prunus_persica Prupe.8G018800_v2.0.a1
pyrus_communis pycom05g00820 pycom10g00920
rosa_chinensis RchiOBHm_Chr6g0277141
rosa_laevigata RLG00000013328
rosa_multiflora Rmu_sc0003539.1_g000022 Rmu_sc0006244.1_g000041
rosa_roxburghii Rroxscaffold_7G00191570
rosa_rugosa Rorug06G0106500
rosa_samantha Rh6AG217300 Rh6BG221300 Rh6CG224200 Rh6DG213900
rosa_wichuraiana Rw6G018970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 817
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 4 cut(s) 375, 556, 648, 909
AgsI TTSAA 1 cut(s) 732
AluBI AGCT 5 cut(s) 41, 239, 284, 641, 818
AluI AGCT 5 cut(s) 41, 239, 284, 641, 818
AlwI GGATC 1 cut(s) 817
AoxI GGCC 4 cut(s) 3, 609, 716, 915
ApeKI GCWGC 5 cut(s) 80, 197, 236, 281, 641
Asp700I GAANNNNTTC 1 cut(s) 576
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 623, 800
AsuHPI GGTGA 4 cut(s) 50, 440, 790, 890
AvaII GGWCC 2 cut(s) 623, 800
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 5 cut(s) 92, 209, 248, 293, 628
BccI CCATC 5 cut(s) 280, 445, 708, 884, 909
BfoI RGCGCY 1 cut(s) 68
BglII AGATCT 1 cut(s) 878
BisI GCNGC 9 cut(s) 50, 68, 81, 89, 167, 198, 237, 282, 642
BlpI GCTNAGC 2 cut(s) 240, 285
BlsI GCNGC 9 cut(s) 51, 69, 82, 90, 168, 199, 238, 283, 643
BmcAI AGTACT 1 cut(s) 556
Bme18I GGWCC 2 cut(s) 623, 800
BmgT120I GGNCC 2 cut(s) 623, 800
BmiI GGNNCC 2 cut(s) 14, 625
BpmI CTGGAG 1 cut(s) 21
Bpu1102I GCTNAGC 2 cut(s) 240, 285
BsaBI GATNNNNATC 1 cut(s) 894
BsaJI CCNNGG 1 cut(s) 628
Bse118I RCCGGY 3 cut(s) 76, 193, 917
Bse3DI GCAATG 1 cut(s) 422
Bse8I GATNNNNATC 1 cut(s) 894
BseDI CCNNGG 1 cut(s) 628
BseGI GGATG 2 cut(s) 272, 667
BseJI GATNNNNATC 1 cut(s) 894
BseMI GCAATG 1 cut(s) 422
BseMII CTCAG 3 cut(s) 114, 153, 192
BseRI GAGGAG 1 cut(s) 872
BseXI GCAGC 5 cut(s) 92, 209, 248, 293, 628
BseYI CCCAGC 2 cut(s) 61, 277
BshFI GGCC 4 cut(s) 5, 611, 718, 917
BsiSI CCGG 4 cut(s) 77, 194, 233, 918
BslFI GGGAC 1 cut(s) 609
BsmFI GGGAC 1 cut(s) 609
BsnI GGCC 4 cut(s) 5, 611, 718, 917
Bsp1407I TGTACA 1 cut(s) 373
Bsp143I GATC 4 cut(s) 600, 684, 809, 878
Bsp1720I GCTNAGC 2 cut(s) 240, 285
Bsp19I CCATGG 1 cut(s) 628
BspANI GGCC 4 cut(s) 5, 611, 718, 917
BspCNI CTCAG 3 cut(s) 113, 152, 191
BspLI GGNNCC 2 cut(s) 14, 625
BspPI GGATC 1 cut(s) 817
BsrDI GCAATG 1 cut(s) 422
BsrFI RCCGGY 3 cut(s) 76, 193, 917
BsrGI TGTACA 1 cut(s) 373
BssAI RCCGGY 3 cut(s) 76, 193, 917
BssECI CCNNGG 1 cut(s) 628
BssMI GATC 4 cut(s) 600, 684, 809, 878
BssT1I CCWWGG 1 cut(s) 628
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 1 cut(s) 545
BstAPI GCANNNNNTGC 1 cut(s) 509
BstAUI TGTACA 1 cut(s) 373
BstDEI CTNAG 5 cut(s) 100, 139, 178, 240, 285
BstDSI CCRYGG 1 cut(s) 628
BstF5I GGATG 2 cut(s) 272, 667
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 4 cut(s) 603, 687, 812, 881
BstMBI GATC 4 cut(s) 600, 684, 809, 878
BstMWI GCNNNNNNNGC 2 cut(s) 424, 509
BstV1I GCAGC 5 cut(s) 92, 209, 248, 293, 628
BstX2I RGATCY 1 cut(s) 878
BstYI RGATCY 1 cut(s) 878
BsuRI GGCC 4 cut(s) 5, 611, 718, 917
BtgI CCRYGG 1 cut(s) 628
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 2 cut(s) 272, 667
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 1 cut(s) 389
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 3 cut(s) 76, 193, 917
Cfr13I GGNCC 2 cut(s) 623, 800
Csp6I GTAC 4 cut(s) 374, 555, 647, 908
CviAII CATG 7 cut(s) 371, 401, 629, 758, 770, 806, 848
CviQI GTAC 4 cut(s) 374, 555, 647, 908
DdeI CTNAG 5 cut(s) 100, 139, 178, 240, 285
DpnI GATC 4 cut(s) 602, 686, 811, 880
DpnII GATC 4 cut(s) 600, 684, 809, 878
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 545
EciI GGCGGA 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 628
Eco47I GGWCC 2 cut(s) 623, 800
EcoO109I RGGNCCY 2 cut(s) 623, 800
EcoT14I CCWWGG 1 cut(s) 628
ErhI CCWWGG 1 cut(s) 628
FaeI CATG 7 cut(s) 374, 404, 632, 761, 773, 809, 851
FaqI GGGAC 1 cut(s) 609
FatI CATG 7 cut(s) 370, 400, 628, 757, 769, 805, 847
FauI CCCGC 2 cut(s) 114, 192
Fnu4HI GCNGC 9 cut(s) 50, 68, 81, 89, 167, 198, 237, 282, 642
FokI GGATG 2 cut(s) 259, 674
Fsp4HI GCNGC 9 cut(s) 50, 68, 81, 89, 167, 198, 237, 282, 642
GlaI GCGC 1 cut(s) 66
GluI GCNGC 9 cut(s) 50, 68, 81, 89, 167, 198, 237, 282, 642
GsaI CCCAGC 2 cut(s) 65, 281
GsuI CTGGAG 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 4 cut(s) 5, 611, 718, 917
HapII CCGG 4 cut(s) 77, 194, 233, 918
HhaI GCGC 1 cut(s) 67
Hin1II CATG 7 cut(s) 374, 404, 632, 761, 773, 809, 851
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 828
HindII GTYRAC 1 cut(s) 828
HinfI GANTC 2 cut(s) 94, 445
HpaII CCGG 4 cut(s) 77, 194, 233, 918
HphI GGTGA 4 cut(s) 50, 440, 790, 890
Hpy166II GTNNAC 3 cut(s) 376, 828, 910
Hpy188I TCNGA 2 cut(s) 563, 706
Hpy188III TCNNGA 2 cut(s) 535, 688
Hpy8I GTNNAC 3 cut(s) 376, 828, 910
Hpy99I CGWCG 1 cut(s) 590
HpyAV CCTTC 6 cut(s) 441, 614, 729, 769, 779, 791
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4V TGCA 3 cut(s) 503, 512, 867
HpyF10VI GCNNNNNNNGC 2 cut(s) 424, 509
HpyF3I CTNAG 5 cut(s) 100, 139, 178, 240, 285
Hsp92II CATG 7 cut(s) 374, 404, 632, 761, 773, 809, 851
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 4 cut(s) 600, 684, 809, 878
Lsp1109I GCAGC 5 cut(s) 92, 209, 248, 293, 628
MaeIII GTNAC 5 cut(s) 56, 95, 134, 173, 320
MalI GATC 4 cut(s) 602, 686, 811, 880
MboI GATC 4 cut(s) 600, 684, 809, 878
MboII GAAGA 6 cut(s) 487, 556, 559, 562, 610, 714
MfeI CAATTG 2 cut(s) 513, 831
MflI RGATCY 1 cut(s) 878
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 513, 831
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 103
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 576
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 3 cut(s) 675, 762, 852
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 4 cut(s) 77, 194, 233, 918
MunI CAATTG 2 cut(s) 513, 831
MwoI GCNNNNNNNGC 2 cut(s) 424, 509
NcoI CCATGG 1 cut(s) 628
NdeII GATC 4 cut(s) 600, 684, 809, 878
NlaIII CATG 7 cut(s) 374, 404, 632, 761, 773, 809, 851
NlaIV GGNNCC 2 cut(s) 14, 625
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 5 cut(s) 56, 95, 134, 173, 320
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 1 cut(s) 445
PkrI GCNGC 9 cut(s) 51, 69, 82, 90, 168, 199, 238, 283, 643
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PpuMI RGGWCCY 2 cut(s) 623, 800
Psp5II RGGWCCY 2 cut(s) 623, 800
PspFI CCCAGC 2 cut(s) 61, 277
PspN4I GGNNCC 2 cut(s) 14, 625
PspPI GGNCC 2 cut(s) 623, 800
PspPPI RGGWCCY 2 cut(s) 623, 800
PsuI RGATCY 1 cut(s) 878
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 4 cut(s) 375, 556, 648, 909
RsaNI GTAC 4 cut(s) 374, 555, 647, 908
RseI CAYNNNNRTG 3 cut(s) 675, 762, 852
SatI GCNGC 9 cut(s) 50, 68, 81, 89, 167, 198, 237, 282, 642
Sau3AI GATC 4 cut(s) 600, 684, 809, 878
Sau96I GGNCC 2 cut(s) 623, 800
ScaI AGTACT 1 cut(s) 556
SchI GAGTC 1 cut(s) 103
SinI GGWCC 2 cut(s) 623, 800
SmiMI CAYNNNNRTG 3 cut(s) 675, 762, 852
Sse9I AATT 2 cut(s) 513, 831
StyI CCWWGG 1 cut(s) 628
TaaI ACNGT 1 cut(s) 457
TaqI TCGA 4 cut(s) 326, 585, 725, 852
TasI AATT 2 cut(s) 513, 831
TatI WGTACW 2 cut(s) 373, 554
TauI GCSGC 4 cut(s) 52, 70, 91, 169
TfiI GAWTC 1 cut(s) 445
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 5 cut(s) 56, 95, 134, 173, 320
TseI GCWGC 5 cut(s) 80, 197, 236, 281, 641
Tsp45I GTSAC 5 cut(s) 56, 95, 134, 173, 320
TspDTI ATGAA 7 cut(s) 463, 520, 569, 659, 746, 780, 836
TspRI CASTG 1 cut(s) 396
VpaK11BI GGWCC 2 cut(s) 623, 800
XmnI GAANNNNTTC 1 cut(s) 576
ZrmI AGTACT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.