Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013442

Physical Location & Seq

Genomic Coordinates Reverse (-)

16589578 .. 16590738

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTTCCGCGATTTGCAGATTGGGGATGTGTTGCCAAATTATGTGACTTTGGTTAGTATCTTGCCTGCGATAGCACAGCTTGGTGTGCTTGATTTGGGGGAATGGGTGCATTTGTATGCCGGGAAGCATAGGATTGGGATCGATGATGTGCTTGGTTCTGCTTTGGTTGATATGTATTCCAAGTGTGGCAGCATTGAGAAGGCGCTTCTTGTGTTTGAGCAACTGCCTAAAAAGAATGTGATCACTTGGAATGCCATAATCAGTGGGCTTGCTATGCATGGTAGAGGGAAAGATGCACTAGATTGTTTTTCAAAGATGGAAAGAGCTGGTGTGGTGCCTAGTGATGTAACATATATTGGTCTCTTGAGTGCTTGTAGCCATGGAGGTATGGTGGAGCAGGGAAGATCACTCTTTAACCACATGATTAATGTAGTAGGCTTCGAACCTAGAATCGAGCATTATGGGTGTATGGTCGATTTATTAGGCTGTGCTGGACTTTTAGAAGAAGCTGAAGAGCTTATACAAAACATGCCAGTTAAGCCAGATGATGTTATATGGAAGGCATTGCTTGGTGCTTGCAAGGTGCATCGTAATATTGAGATGGGTAAGCGCATCGCAGAGATTTTGATGGATTTGGCTCCTCGTGATAGTGGATCATATGTTGCTTTAGCAAACATGTATGCATCTTTGGGAAATTGGGAGGCAGTTTCAAATGTGAGAATGTTGATGAAAGATATGGACATTAGGAAAGACCCTGGAGGTAGTTGGATTGAGCTTGATGAAGTGCTTCATGAATTTCTGGTTGAAGATAAATCTCATTCTAGAGCAGGAGAAATCCATTCAATGCTGGAAGAAATTTCCAACAAATTAAGATTAGAAGGGTATAAGCCTAACACCACACAATTGTTGCTCAACATTGATGAAGAAGAAAAACAAAGTGCTTTACATTATCACAGTGAGAAAATTGCGGTTGCCTTTGGCTTAATCAGTACAGCCCCTCAATCTCCACTTCTAATTGTTAAGAACCTACGCATATGCGAGGATTGTCACTCCTCTATAAAGCTAATCTCGAAAATTTACAAACGAAAGATCATTGTTCGGGACCGTAAGCGCTTCCACCACTTCGAGCATGGGTTGTGCTCTTGCAATGACTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

387

Amino Acids

43.28

Weight (kDa)

5.98

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	78 - 126	3.5e-13	PPR repeat family
PPR	PF01535	81 - 111	2.8e-07	PPR repeat
E_motif	PF20431	196 - 258	2.4e-17	E motif
DYW_deaminase	PF14432	294 - 386	3.1e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48910
fragaria_vesca	FvH4_2g19560 FvH4_2g19570
malus_domestica	MD05G1179700.v1.1 MD10G1169300.v1.1
prunus_persica	Prupe.6G095600_v2.0.a1 Prupe.8G207000_v2.0.a1
pyrus_communis	pycom05g16620 pycom10g14610
rosa_chinensis	RchiOBHm_Chr6g0285331
rosa_laevigata	RLG00000012653
rosa_multiflora	Rmu_sc0011958.1_g000003
rosa_roxburghii	Rroxscaffold_7G00183350
rosa_rugosa	Rorug06G0173600
rosa_samantha	Rh6AG284300 Rh6BG285100 Rh6DG279600
rosa_wichuraiana	Rw6G024470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	334
AccII	CGCG	1 cut(s)	9
AciI	CCGC	2 cut(s)	7, 968
AclWI	GGATC	2 cut(s)	146, 661
AcsI	RAATTY	3 cut(s)	794, 855, 1074
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	1 cut(s)	991
AfeI	AGCGCT	1 cut(s)	1112
AflIII	ACRYGT	1 cut(s)	675
AgsI	TTSAA	4 cut(s)	312, 711, 806, 843
AjnI	CCWGG	1 cut(s)	754
AluBI	AGCT	6 cut(s)	79, 326, 509, 517, 775, 1063
AluI	AGCT	6 cut(s)	79, 326, 509, 517, 775, 1063
Alw21I	GWGCWC	1 cut(s)	1142
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	2 cut(s)	146, 661
Aor51HI	AGCGCT	1 cut(s)	1112
ApeKI	GCWGC	1 cut(s)	189
ApoI	RAATTY	3 cut(s)	794, 855, 1074
AseI	ATTAAT	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	786
AspLEI	GCGC	3 cut(s)	205, 612, 1113
AspS9I	GGNCC	1 cut(s)	1102
AsuC2I	CCSGG	1 cut(s)	121
AsuII	TTCGAA	1 cut(s)	441
AvaII	GGWCC	1 cut(s)	1102
BanI	GGYRCC	1 cut(s)	334
BarI	GAAGNNNNNNTAC	2 cut(s)	504, 536
BauI	CACGAG	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	1142
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	3 cut(s)	310, 595, 622
BciT130I	CCWGG	1 cut(s)	756
BclI	TGATCA	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	4 cut(s)	299, 339, 447, 822
BfoI	RGCGCY	2 cut(s)	206, 1114
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	2 cut(s)	121, 756
Bme18I	GGWCC	1 cut(s)	1102
BmgT120I	GGNCC	1 cut(s)	1102
BmiI	GGNNCC	3 cut(s)	336, 639, 1103
BmrFI	CCNGG	2 cut(s)	121, 756
BmsI	GCATC	4 cut(s)	283, 595, 621, 692
BpmI	CTGGAG	1 cut(s)	777
Bpu14I	TTCGAA	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	385
BpuMI	CCSGG	1 cut(s)	121
Bsa29I	ATCGAT	1 cut(s)	141
BsaBI	GATNNNNATC	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	379, 754
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bse1I	ACTGG	2 cut(s)	533, 1160
Bse3DI	GCAATG	2 cut(s)	563, 1153
Bse8I	GATNNNNATC	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	756
BseCI	ATCGAT	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	379, 754
BseGI	GGATG	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	137
BseMI	GCAATG	2 cut(s)	563, 1153
BseNI	ACTGG	2 cut(s)	533, 1160
BseRI	GAGGAG	2 cut(s)	630, 1042
BseXI	GCAGC	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	334
BshVI	ATCGAT	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	1142
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	1115
BsmAI	GTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	1115
BsmI	GAATGC	1 cut(s)	256
Bso31I	GGTCTC	1 cut(s)	365
Bsp119I	TTCGAA	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	1142
Bsp143I	GATC	5 cut(s)	138, 240, 404, 653, 1089
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	2 cut(s)	7, 968
BspDI	ATCGAT	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	9
BspHI	TCATGA	1 cut(s)	790
BspLI	GGNNCC	3 cut(s)	336, 639, 1103
BspPI	GGATC	2 cut(s)	146, 661
BspQI	GCTCTTC	1 cut(s)	507
BspT104I	TTCGAA	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	365
BsrDI	GCAATG	2 cut(s)	563, 1153
BsrI	ACTGG	2 cut(s)	533, 1160
BssECI	CCNNGG	2 cut(s)	379, 754
BssMI	GATC	5 cut(s)	138, 240, 404, 653, 1089
BssSI	CACGAG	1 cut(s)	642
BssT1I	CCWWGG	1 cut(s)	379
Bst2BI	CACGAG	1 cut(s)	642
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	2 cut(s)	956, 1106
Bst6I	CTCTTC	1 cut(s)	507
BstBI	TTCGAA	1 cut(s)	441
BstC8I	GCNNGC	3 cut(s)	66, 270, 577
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	9
BstH2I	RGCGCY	2 cut(s)	206, 1114
BstHHI	GCGC	3 cut(s)	205, 612, 1113
BstKTI	GATC	5 cut(s)	141, 243, 407, 656, 1092
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	5 cut(s)	138, 240, 404, 653, 1089
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 274, 538
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	2 cut(s)	532, 679
BstSCI	CCNGG	2 cut(s)	119, 754
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	141
BsuTUI	ATCGAT	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	379
BtgZI	GCGATG	1 cut(s)	598
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	268, 961
Cac8I	GCNNGC	3 cut(s)	66, 270, 577
CciI	TCATGA	1 cut(s)	790
CfoI	GCGC	3 cut(s)	205, 612, 1113
Cfr13I	GGNCC	1 cut(s)	1102
ClaI	ATCGAT	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	990
CviAII	CATG	7 cut(s)	278, 380, 421, 529, 676, 791, 1130
CviQI	GTAC	1 cut(s)	990
DpnI	GATC	5 cut(s)	140, 242, 406, 655, 1091
DpnII	GATC	5 cut(s)	138, 240, 404, 653, 1089
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	379
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	1102
Eco47III	AGCGCT	1 cut(s)	1112
Eco57I	CTGAAG	1 cut(s)	531
EcoRII	CCWGG	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	379
EcoT22I	ATGCAT	2 cut(s)	279, 685
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	7 cut(s)	281, 383, 424, 532, 679, 794, 1133
FaqI	GGGAC	1 cut(s)	1115
FatI	CATG	7 cut(s)	277, 379, 420, 528, 675, 790, 1129
FauNDI	CATATG	2 cut(s)	658, 1034
FbaI	TGATCA	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	190
FspBI	CTAG	4 cut(s)	299, 339, 447, 822
GlaI	GCGC	3 cut(s)	204, 611, 1112
GluI	GCNGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	777
HaeII	RGCGCY	2 cut(s)	206, 1114
HapII	CCGG	1 cut(s)	120
HhaI	GCGC	3 cut(s)	205, 612, 1113
Hin1II	CATG	7 cut(s)	281, 383, 424, 532, 679, 794, 1133
Hin6I	GCGC	3 cut(s)	203, 610, 1111
HinP1I	GCGC	3 cut(s)	203, 610, 1111
HinfI	GANTC	1 cut(s)	450
HpaII	CCGG	1 cut(s)	120
Hpy188III	TCNNGA	6 cut(s)	364, 644, 791, 822, 1069, 1100
HpyAV	CCTTC	3 cut(s)	193, 553, 872
HpyCH4III	ACNGT	2 cut(s)	956, 1106
HpyCH4V	TGCA	8 cut(s)	16, 109, 277, 296, 579, 586, 683, 1146
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 274, 538
Hsp92II	CATG	7 cut(s)	281, 383, 424, 532, 679, 794, 1133
HspAI	GCGC	3 cut(s)	203, 610, 1111
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	5 cut(s)	138, 240, 404, 653, 1089
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	2 cut(s)	394, 643
Lsp1109I	GCAGC	1 cut(s)	201
LweI	GCATC	4 cut(s)	283, 595, 621, 692
MaeI	CTAG	4 cut(s)	299, 339, 447, 822
MaeIII	GTNAC	3 cut(s)	43, 346, 1046
MalI	GATC	5 cut(s)	140, 242, 406, 655, 1091
MboI	GATC	5 cut(s)	138, 240, 404, 653, 1089
MboII	GAAGA	7 cut(s)	414, 515, 524, 818, 863, 935, 938
MfeI	CAATTG	1 cut(s)	902
MhlI	GDGCHC	1 cut(s)	1142
MluCI	AATT	9 cut(s)	37, 694, 794, 855, 866, 902, 963, 1014, 1074
MmeI	TCCRAC	2 cut(s)	746, 885
MnlI	CCTC	8 cut(s)	278, 377, 651, 694, 752, 1008, 1033, 1063
Mph1103I	ATGCAT	2 cut(s)	279, 685
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	6 cut(s)	414, 426, 537, 869, 983, 1020
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	2 cut(s)	121, 756
MunI	CAATTG	1 cut(s)	902
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	756
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	85, 274, 538
NciI	CCSGG	1 cut(s)	121
NcoI	CCATGG	1 cut(s)	379
NdeI	CATATG	2 cut(s)	658, 1034
NdeII	GATC	5 cut(s)	138, 240, 404, 653, 1089
NlaIII	CATG	7 cut(s)	281, 383, 424, 532, 679, 794, 1133
NlaIV	GGNNCC	3 cut(s)	336, 639, 1103
NmuCI	GTSAC	2 cut(s)	43, 1046
NsiI	ATGCAT	2 cut(s)	279, 685
NspI	RCATGY	2 cut(s)	532, 679
NspV	TTCGAA	1 cut(s)	441
PagI	TCATGA	1 cut(s)	790
PciI	ACATGT	1 cut(s)	675
PciSI	GCTCTTC	1 cut(s)	507
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	191
PscI	ACATGT	1 cut(s)	675
PshBI	ATTAAT	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	3 cut(s)	336, 639, 1103
PspPI	GGNCC	1 cut(s)	1102
RsaI	GTAC	1 cut(s)	991
RsaNI	GTAC	1 cut(s)	990
RseI	CAYNNNNRTG	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	6 cut(s)	414, 426, 537, 869, 983, 1020
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	5 cut(s)	138, 240, 404, 653, 1089
Sau96I	GGNCC	1 cut(s)	1102
ScrFI	CCNGG	2 cut(s)	121, 756
SduI	GDGCHC	1 cut(s)	1142
SfaNI	GCATC	4 cut(s)	283, 595, 621, 692
SfuI	TTCGAA	1 cut(s)	441
SinI	GGWCC	1 cut(s)	1102
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	9 cut(s)	37, 694, 794, 855, 866, 902, 963, 1014, 1074
SsiI	CCGC	2 cut(s)	7, 968
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	4 cut(s)	299, 339, 447, 822
StyD4I	CCNGG	2 cut(s)	119, 754
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	956, 1106
TaqI	TCGA	6 cut(s)	141, 441, 453, 474, 1070, 1125
TasI	AATT	9 cut(s)	37, 694, 794, 855, 866, 902, 963, 1014, 1074
TatI	WGTACW	1 cut(s)	989
TfiI	GAWTC	1 cut(s)	450
Tru1I	TTAA	6 cut(s)	414, 426, 537, 869, 983, 1020
Tru9I	TTAA	6 cut(s)	414, 426, 537, 869, 983, 1020
TscAI	CASTG	2 cut(s)	268, 961
TseFI	GTSAC	2 cut(s)	43, 1046
TseI	GCWGC	1 cut(s)	189
Tsp45I	GTSAC	2 cut(s)	43, 1046
TspDTI	ATGAA	5 cut(s)	743, 779, 795, 807, 936
TspRI	CASTG	2 cut(s)	268, 961
VpaK11BI	GGWCC	1 cut(s)	1102
VspI	ATTAAT	1 cut(s)	426
XapI	RAATTY	3 cut(s)	794, 855, 1074
XbaI	TCTAGA	1 cut(s)	821
XceI	RCATGY	2 cut(s)	532, 679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1127
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	4 cut(s)	299, 339, 447, 822
Zsp2I	ATGCAT	2 cut(s)	279, 685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.