Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0013442

Physical Location & Seq

Genomic Coordinates Reverse (-)

47380328 .. 47382867

Gene Structure 2540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG279600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1944 bp

ATGGTTGATATCAAACTTGAGATTAATTGTTTGTTTCTCATTGGCCAAACAATGAACTCCTCCAACATCTACAACCCCACAACTCGTCACCCATCTTCACAATTCCCACAAATCAAAACCTTGAAAGACTTGCAACAAGTGCATGCCCACTTCATCAAAACCCGCCAAATCCACGACCCTCTTGCCGCGGCCGAAATCCTCCGATTCTACGCCCTCTCAAATCACCGCAACATTGAGTACGCTCGTGCCGTATTCAACCAAATTCAGACACCCAATTGCTTCTCCTGGAACACCATCGTCAGAGCTCTTGCCGAGAGCTCTGTTTCCGAGCACCCACCTGAGGCTCTGTTCTTGTTTTATCGAATGATTTGCGATGGTTTGGTGGCGCCAAATAAGTTCACATTTCCTTCTGTGTTGAAGGCCTGTTCTAGAATAGGGAATGCTCAGGTTGGCAGACGTGTTCATGGGATGGTTGTCAAGTTTGGGTTGGATGATGATGAGTTTGTTGTGAGTAGTCTTGTGAGGATGTATGTAATGTGTGGGGTTATGGAGGATGCACATTCATTGTTTTCTAGGAGTGTAGCTGATTGTGGTGATTTGAATGAGAAGAAGCAAGAGGGTAATGTGGTTTTGTGGAATTTGATAGTTGATGGCCATGTGAGACTCGGGGAGTTTGGAGCTGCACGGGAGCTGTTCGACAAAATGCCTCAAAGAAGTGTTGTCTCGTGGAATGCGATGATCTCCGCGTATGCGCAAAATGGGTTCGTTAGGGAAGCCGTAGAAATGTTCCGTGATATGCAGATTGGGGATGTATGCCCAAATTATGTGACTTTGGTTAGCGCCTTGCCTGCGATAGCACGACTTGGTCTGCTTGAATTGGGGAAATGGGTGCATTTGTATGCCGGGAAGCATAAGATTGGGATCGATGATGTGCTTGGTTCTGCTTTGGTTGATATGTATTCCAAGTGTGGCGACATTGAGAAGGCGCTTCTAGTTTTTGAGCAACTGCCTAAAAAGAATGTGATCACTTGGAATGCCATAATCAGTGGGCTTGCTATGCATGGTAGAGGAAAGGATGCACTAGATTATTTTTCAAAGATGGAAAGAGCTGGTGTGGTGCCTAGTGATGTAACATATATTGGTCTCTTGAGTGCTTGTAGCCATGGAGGTATGGTGGAGCAGGGCAGATCATTCTTCAACCACATGATTAATGTAGTTGGCTTAGAACCTAGAATCGAGCATTATGGGTGTATGGTCGATTTATTAGGCCGTGCTGGACTGTTAGAAGAAGCTGAAGAGCTTATACTAAATATGCCAATTCAGCCGGATGATGTTATATGGAAGGCATTGCTTGGTGCTTGCAAGGTACAAGGGAATATTGAGATGGGAGAACGTGTCGCAAAGATTTTGATGGACTTGGCTCCCCATGATAGTGGATCATATGTTGCTCTATCGAACATGTATGCATCTTTGGGAAATTGGGAGGCGGTTTCAAATGTGAGATTGTTGATGAAGGATATGGACATTAGGAAAGACCCCGGTGGTAGTTGGATTGAGCTTGATGGAGTGCTTCATGAATTTCTGGTTGAAGATCAATCACATTCTAGAGCAGAAGAAATCCATTCAATGCTGGAAGAAATTTCCAACGAGTTAAGGTTAGAAGGATATAAGCCTAACACCACACAAGTATTGCTCAACGTGGCTGAAGAAGAAAAACAAAGTGCTTTACATTATCACAGTGAGAAAATTGCAGTTGCCTTTGGCTTAATCAGTACAGCCCCTCAATCGCCACTTCGAATTGTTAAGAACCTACGCATATGCGAGGATTGTCACTCCTCTATAAAGTTAATCTCAAAAATTTACAAACGAAAGATCATTGTTCGGGACCGTAAGCGCTTCCACCACTTTGAGCATGGTTTGTGCTCTTGCATGGACTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

647

Amino Acids

72.74

Weight (kDa)

6.21

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	239 - 278	1.8e-08	PPR repeat family
PPR_1	PF12854	239 - 267	5.6e-06	PPR repeat
PPR	PF01535	241 - 267	6.4e-09	PPR repeat
PPR_2	PF13041	339 - 387	3e-12	PPR repeat family
PPR	PF01535	342 - 372	5.4e-07	PPR repeat
E_motif	PF20431	459 - 519	4.3e-17	E motif
DYW_deaminase	PF14432	555 - 647	6.7e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48910
fragaria_vesca	FvH4_2g19560 FvH4_2g19570
malus_domestica	MD05G1179700.v1.1 MD10G1169300.v1.1
prunus_persica	Prupe.6G095600_v2.0.a1 Prupe.8G207000_v2.0.a1
pyrus_communis	pycom05g16620 pycom10g14610
rosa_chinensis	RchiOBHm_Chr6g0285331
rosa_laevigata	RLG00000012653
rosa_multiflora	Rmu_sc0011958.1_g000003
rosa_roxburghii	Rroxscaffold_7G00183350
rosa_rugosa	Rorug06G0173600
rosa_samantha	Rh6AG284300 Rh6BG285100 Rh6DG279600
rosa_wichuraiana	Rw6G024470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	753
AccB1I	GGYRCC	2 cut(s)	385, 1117
AccII	CGCG	2 cut(s)	188, 746
AciI	CCGC	6 cut(s)	163, 186, 188, 226, 744, 1487
AclWI	GGATC	2 cut(s)	929, 1444
AcoI	YGGCCR	3 cut(s)	43, 189, 652
AcsI	RAATTY	5 cut(s)	261, 637, 1577, 1638, 1857
AcuI	CTGAAG	2 cut(s)	1314, 1725
AcyI	GRCGYC	1 cut(s)	386
AfaI	GTAC	3 cut(s)	239, 1368, 1774
AfeI	AGCGCT	1 cut(s)	1895
AfiI	CCNNNNNNNGG	1 cut(s)	340
AflIII	ACRYGT	3 cut(s)	457, 1393, 1458
AjiI	CACGTC	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	9 cut(s)	305, 318, 584, 680, 691, 1109, 1292, 1300, 1558
AluI	AGCT	9 cut(s)	305, 318, 584, 680, 691, 1109, 1292, 1300, 1558
Alw21I	GWGCWC	4 cut(s)	307, 320, 333, 1925
Alw26I	GTCTC	3 cut(s)	655, 727, 1148
AlwI	GGATC	2 cut(s)	929, 1444
Ama87I	CYCGRG	1 cut(s)	665
Aor51HI	AGCGCT	1 cut(s)	1895
AoxI	GGCC	5 cut(s)	43, 189, 420, 652, 1267
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	5 cut(s)	261, 637, 1577, 1638, 1857
AseI	ATTAAT	2 cut(s)	24, 1209
AspLEI	GCGC	5 cut(s)	388, 754, 842, 988, 1896
AspS9I	GGNCC	1 cut(s)	1885
AsuC2I	CCSGG	2 cut(s)	904, 1539
AsuHPI	GGTGA	3 cut(s)	80, 215, 605
AsuII	TTCGAA	1 cut(s)	1795
AvaI	CYCGRG	1 cut(s)	665
AvaII	GGWCC	1 cut(s)	1885
AxyI	CCTNAGG	1 cut(s)	339
BalI	TGGCCA	2 cut(s)	45, 654
BanI	GGYRCC	2 cut(s)	385, 1117
BanII	GRGCYC	2 cut(s)	307, 320
BarI	GAAGNNNNNNTAC	2 cut(s)	1287, 1319
BauI	CACGAG	2 cut(s)	243, 724
Bbv12I	GWGCWC	4 cut(s)	307, 320, 333, 1925
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	9 cut(s)	100, 302, 368, 463, 644, 1093, 1378, 1405, 1556
BceAI	ACGGC	3 cut(s)	233, 761, 1254
BcgI	CGANNNNNNTGC	4 cut(s)	164, 198, 351, 385
BciT130I	CCWGG	1 cut(s)	286
BclI	TGATCA	1 cut(s)	1023
BcnI	CCSGG	2 cut(s)	904, 1539
BcoDI	GTCTC	3 cut(s)	655, 727, 1148
BfaI	CTAG	7 cut(s)	429, 573, 992, 1082, 1122, 1230, 1605
BfoI	RGCGCY	4 cut(s)	389, 843, 989, 1897
BisI	GCNGC	3 cut(s)	186, 189, 681
BlsI	GCNGC	3 cut(s)	187, 190, 682
Bme1390I	CCNGG	3 cut(s)	286, 904, 1539
Bme18I	GGWCC	1 cut(s)	1885
BmeT110I	CYCGRG	1 cut(s)	665
BmgBI	CACGTC	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	1885
BmiI	GGNNCC	4 cut(s)	387, 1119, 1422, 1886
BmrFI	CCNGG	3 cut(s)	286, 904, 1539
BmsI	GCATC	3 cut(s)	544, 1066, 1475
Bpu10I	CCTNAGC	1 cut(s)	444
Bpu14I	TTCGAA	1 cut(s)	1795
BpuEI	CTTGAG	2 cut(s)	38, 1168
BpuMI	CCSGG	2 cut(s)	904, 1539
Bsa29I	ATCGAT	1 cut(s)	924
BsaBI	GATNNNNATC	1 cut(s)	920
BsaHI	GRCGYC	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	1148
BsaJI	CCNNGG	3 cut(s)	186, 1162, 1537
BsaXI	ACNNNNNCTCC	4 cut(s)	1158, 1188, 1380, 1410
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	1943
Bse21I	CCTNAGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	1346
Bse8I	GATNNNNATC	1 cut(s)	920
BseBI	CCWGG	1 cut(s)	286
BseCI	ATCGAT	1 cut(s)	924
BseDI	CCNNGG	3 cut(s)	186, 1162, 1537
BseGI	GGATG	7 cut(s)	474, 496, 531, 559, 814, 1081, 1333
BseJI	GATNNNNATC	1 cut(s)	920
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMI	GCAATG	1 cut(s)	1346
BseMII	CTCAG	2 cut(s)	330, 458
BseNI	ACTGG	1 cut(s)	1943
BseRI	GAGGAG	2 cut(s)	49, 1825
BseX3I	CGGCCG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	667
BsgI	GTGCAG	1 cut(s)	666
Bsh1236I	CGCG	2 cut(s)	188, 746
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	5 cut(s)	45, 191, 422, 654, 1269
BshNI	GGYRCC	2 cut(s)	385, 1117
BshVI	ATCGAT	1 cut(s)	924
BsiEI	CGRYCG	1 cut(s)	192
BsiHKAI	GWGCWC	4 cut(s)	307, 320, 333, 1925
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	3 cut(s)	903, 1325, 1539
BslFI	GGGAC	1 cut(s)	1898
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	3 cut(s)	655, 727, 1148
BsmFI	GGGAC	1 cut(s)	1898
BsmI	GAATGC	3 cut(s)	445, 736, 1039
BsnI	GGCC	5 cut(s)	45, 191, 422, 654, 1269
Bso31I	GGTCTC	1 cut(s)	1148
BsoBI	CYCGRG	1 cut(s)	665
Bsp119I	TTCGAA	1 cut(s)	1795
Bsp1286I	GDGCHC	4 cut(s)	307, 320, 333, 1925
Bsp143I	GATC	7 cut(s)	738, 921, 1023, 1187, 1436, 1591, 1872
Bsp19I	CCATGG	1 cut(s)	1162
BspACI	CCGC	6 cut(s)	163, 186, 188, 226, 744, 1487
BspANI	GGCC	5 cut(s)	45, 191, 422, 654, 1269
BspCNI	CTCAG	2 cut(s)	331, 457
BspDI	ATCGAT	1 cut(s)	924
BspFNI	CGCG	2 cut(s)	188, 746
BspHI	TCATGA	1 cut(s)	1573
BspLI	GGNNCC	4 cut(s)	387, 1119, 1422, 1886
BspPI	GGATC	2 cut(s)	929, 1444
BspQI	GCTCTTC	1 cut(s)	1290
BspT104I	TTCGAA	1 cut(s)	1795
BspT107I	GGYRCC	2 cut(s)	385, 1117
BspTNI	GGTCTC	1 cut(s)	1148
BsrDI	GCAATG	1 cut(s)	1346
BsrI	ACTGG	1 cut(s)	1943
BssECI	CCNNGG	3 cut(s)	186, 1162, 1537
BssMI	GATC	7 cut(s)	738, 921, 1023, 1187, 1436, 1591, 1872
BssNI	GRCGYC	1 cut(s)	386
BssSI	CACGAG	2 cut(s)	243, 724
BssT1I	CCWWGG	1 cut(s)	1162
Bst2BI	CACGAG	2 cut(s)	243, 724
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	3 cut(s)	1281, 1739, 1889
Bst6I	CTCTTC	1 cut(s)	1290
BstACI	GRCGYC	1 cut(s)	386
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstBI	TTCGAA	1 cut(s)	1795
BstC8I	GCNNGC	4 cut(s)	144, 849, 1053, 1360
BstDEI	CTNAG	3 cut(s)	339, 444, 1222
BstDSI	CCRYGG	2 cut(s)	186, 1162
BstF5I	GGATG	7 cut(s)	474, 496, 531, 559, 814, 1081, 1333
BstFNI	CGCG	2 cut(s)	188, 746
BstH2I	RGCGCY	4 cut(s)	389, 843, 989, 1897
BstHHI	GCGC	5 cut(s)	388, 754, 842, 988, 1896
BstKTI	GATC	7 cut(s)	741, 924, 1026, 1190, 1439, 1594, 1875
BstMAI	GTCTC	3 cut(s)	655, 727, 1148
BstMBI	GATC	7 cut(s)	738, 921, 1023, 1187, 1436, 1591, 1872
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 848, 1057, 1321
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	2 cut(s)	146, 1462
BstSCI	CCNGG	3 cut(s)	284, 902, 1537
BstUI	CGCG	2 cut(s)	188, 746
BstV1I	GCAGC	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	1433
BstZI	CGGCCG	1 cut(s)	189
Bsu15I	ATCGAT	1 cut(s)	924
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	5 cut(s)	45, 191, 422, 654, 1269
BsuTUI	ATCGAT	1 cut(s)	924
BtgI	CCRYGG	2 cut(s)	186, 1162
BtgZI	GCGATG	2 cut(s)	387, 749
BtrI	CACGTC	1 cut(s)	458
BtsCI	GGATG	7 cut(s)	474, 496, 531, 559, 814, 1081, 1333
BtsIMutI	CAGTG	2 cut(s)	1051, 1744
Cac8I	GCNNGC	4 cut(s)	144, 849, 1053, 1360
CciI	TCATGA	1 cut(s)	1573
CfoI	GCGC	5 cut(s)	388, 754, 842, 988, 1896
Cfr13I	GGNCC	1 cut(s)	1885
Cfr42I	CCGCGG	1 cut(s)	189
ClaI	ATCGAT	1 cut(s)	924
Csp6I	GTAC	3 cut(s)	238, 1367, 1773
CviQI	GTAC	3 cut(s)	238, 1367, 1773
DdeI	CTNAG	3 cut(s)	339, 444, 1222
DinI	GGCGCC	1 cut(s)	387
DpnI	GATC	7 cut(s)	740, 923, 1025, 1189, 1438, 1593, 1874
DpnII	GATC	7 cut(s)	738, 921, 1023, 1187, 1436, 1591, 1872
EaeI	YGGCCR	3 cut(s)	43, 189, 652
EagI	CGGCCG	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	1290
EarI	CTCTTC	1 cut(s)	1290
Ecl136II	GAGCTC	2 cut(s)	305, 318
EclXI	CGGCCG	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	1162
Eco147I	AGGCCT	1 cut(s)	422
Eco24I	GRGCYC	2 cut(s)	307, 320
Eco31I	GGTCTC	1 cut(s)	1148
Eco32I	GATATC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	1885
Eco47III	AGCGCT	1 cut(s)	1895
Eco52I	CGGCCG	1 cut(s)	189
Eco53kI	GAGCTC	2 cut(s)	305, 318
Eco57I	CTGAAG	2 cut(s)	1314, 1725
Eco81I	CCTNAGG	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	665
EcoICRI	GAGCTC	2 cut(s)	305, 318
EcoRII	CCWGG	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	1162
EcoT22I	ATGCAT	2 cut(s)	1062, 1468
EcoT38I	GRGCYC	2 cut(s)	307, 320
EgeI	GGCGCC	1 cut(s)	387
EheI	GGCGCC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	1162
FaqI	GGGAC	1 cut(s)	1898
FauI	CCCGC	1 cut(s)	170
FauNDI	CATATG	2 cut(s)	1441, 1817
FbaI	TGATCA	1 cut(s)	1023
Fnu4HI	GCNGC	3 cut(s)	186, 189, 681
FokI	GGATG	7 cut(s)	481, 503, 538, 566, 821, 1088, 1340
FriOI	GRGCYC	2 cut(s)	307, 320
Fsp4HI	GCNGC	3 cut(s)	186, 189, 681
FspBI	CTAG	7 cut(s)	429, 573, 992, 1082, 1122, 1230, 1605
FspI	TGCGCA	1 cut(s)	753
GlaI	GCGC	5 cut(s)	387, 753, 841, 987, 1895
GluI	GCNGC	3 cut(s)	186, 189, 681
HaeII	RGCGCY	4 cut(s)	389, 843, 989, 1897
HaeIII	GGCC	5 cut(s)	45, 191, 422, 654, 1269
HapII	CCGG	3 cut(s)	903, 1325, 1539
HhaI	GCGC	5 cut(s)	388, 754, 842, 988, 1896
Hin1I	GRCGYC	1 cut(s)	386
Hin6I	GCGC	5 cut(s)	386, 752, 840, 986, 1894
HinP1I	GCGC	5 cut(s)	386, 752, 840, 986, 1894
HinfI	GANTC	3 cut(s)	204, 663, 1233
HpaII	CCGG	3 cut(s)	903, 1325, 1539
HphI	GGTGA	3 cut(s)	80, 215, 605
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	4 cut(s)	203, 267, 302, 328
Hpy188III	TCNNGA	5 cut(s)	429, 1147, 1574, 1605, 1883
Hpy8I	GTNNAC	1 cut(s)	399
HpyAV	CCTTC	6 cut(s)	412, 417, 976, 1336, 1507, 1655
HpyCH4III	ACNGT	3 cut(s)	1281, 1739, 1889
HpyCH4IV	ACGT	3 cut(s)	457, 1393, 1698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 848, 1057, 1321
HpyF3I	CTNAG	3 cut(s)	339, 444, 1222
HpySE526I	ACGT	3 cut(s)	457, 1393, 1698
Hsp92I	GRCGYC	1 cut(s)	386
HspAI	GCGC	5 cut(s)	386, 752, 840, 986, 1894
KasI	GGCGCC	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	1023
KspI	CCGCGG	1 cut(s)	189
Kzo9I	GATC	7 cut(s)	738, 921, 1023, 1187, 1436, 1591, 1872
LguI	GCTCTTC	1 cut(s)	1290
LmnI	GCTCC	4 cut(s)	677, 688, 1177, 1426
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	3 cut(s)	544, 1066, 1475
MaeI	CTAG	7 cut(s)	429, 573, 992, 1082, 1122, 1230, 1605
MaeII	ACGT	3 cut(s)	457, 1393, 1698
MaeIII	GTNAC	4 cut(s)	86, 826, 1129, 1829
MalI	GATC	7 cut(s)	740, 923, 1025, 1189, 1438, 1593, 1874
MboI	GATC	7 cut(s)	738, 921, 1023, 1187, 1436, 1591, 1872
MfeI	CAATTG	1 cut(s)	274
MhlI	GDGCHC	4 cut(s)	307, 320, 333, 1925
MlsI	TGGCCA	2 cut(s)	45, 654
MluNI	TGGCCA	2 cut(s)	45, 654
Mly113I	GGCGCC	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	657
MmeI	TCCRAC	4 cut(s)	87, 468, 1529, 1668
Mox20I	TGGCCA	2 cut(s)	45, 654
Mph1103I	ATGCAT	2 cut(s)	1062, 1468
MscI	TGGCCA	2 cut(s)	45, 654
MseI	TTAA	6 cut(s)	24, 1209, 1652, 1766, 1803, 1847
MslI	CAYNNNNRTG	2 cut(s)	897, 1431
Msp20I	TGGCCA	2 cut(s)	45, 654
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	3 cut(s)	903, 1325, 1539
MspR9I	CCNGG	3 cut(s)	286, 904, 1539
MunI	CAATTG	1 cut(s)	274
Mva1269I	GAATGC	3 cut(s)	445, 736, 1039
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	2 cut(s)	188, 746
MwoI	GCNNNNNNNGC	4 cut(s)	139, 848, 1057, 1321
NarI	GGCGCC	1 cut(s)	386
NciI	CCSGG	2 cut(s)	904, 1539
NcoI	CCATGG	1 cut(s)	1162
NdeI	CATATG	2 cut(s)	1441, 1817
NdeII	GATC	7 cut(s)	738, 921, 1023, 1187, 1436, 1591, 1872
NlaIV	GGNNCC	4 cut(s)	387, 1119, 1422, 1886
NmeAIII	GCCGAG	1 cut(s)	337
NmuCI	GTSAC	3 cut(s)	86, 826, 1829
NsbI	TGCGCA	1 cut(s)	753
NsiI	ATGCAT	2 cut(s)	1062, 1468
NspI	RCATGY	2 cut(s)	146, 1462
NspV	TTCGAA	1 cut(s)	1795
PaeI	GCATGC	1 cut(s)	146
PagI	TCATGA	1 cut(s)	1573
PceI	AGGCCT	1 cut(s)	422
PciI	ACATGT	1 cut(s)	1458
PciSI	GCTCTTC	1 cut(s)	1290
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 731
PctI	GAATGC	3 cut(s)	445, 736, 1039
PfeI	GAWTC	2 cut(s)	204, 1233
PflFI	GACNNNGTC	1 cut(s)	864
PfoI	TCCNGGA	1 cut(s)	284
PkrI	GCNGC	3 cut(s)	187, 190, 682
PleI	GAGTC	1 cut(s)	657
PluTI	GGCGCC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	657
PscI	ACATGT	1 cut(s)	1458
PshBI	ATTAAT	2 cut(s)	24, 1209
Psp124BI	GAGCTC	2 cut(s)	307, 320
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	4 cut(s)	387, 1119, 1422, 1886
PspPI	GGNCC	1 cut(s)	1885
PsyI	GACNNNGTC	1 cut(s)	864
RsaI	GTAC	3 cut(s)	239, 1368, 1774
RsaNI	GTAC	3 cut(s)	238, 1367, 1773
RseI	CAYNNNNRTG	2 cut(s)	897, 1431
SacI	GAGCTC	2 cut(s)	307, 320
SacII	CCGCGG	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	1290
SaqAI	TTAA	6 cut(s)	24, 1209, 1652, 1766, 1803, 1847
SatI	GCNGC	3 cut(s)	186, 189, 681
Sau3AI	GATC	7 cut(s)	738, 921, 1023, 1187, 1436, 1591, 1872
Sau96I	GGNCC	1 cut(s)	1885
SchI	GAGTC	1 cut(s)	657
ScrFI	CCNGG	3 cut(s)	286, 904, 1539
SduI	GDGCHC	4 cut(s)	307, 320, 333, 1925
SfaNI	GCATC	3 cut(s)	544, 1066, 1475
SfoI	GGCGCC	1 cut(s)	387
Sfr303I	CCGCGG	1 cut(s)	189
SfuI	TTCGAA	1 cut(s)	1795
SgrBI	CCGCGG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	1885
SmiMI	CAYNNNNRTG	2 cut(s)	897, 1431
SmlI	CTYRAG	2 cut(s)	17, 1147
SmoI	CTYRAG	2 cut(s)	17, 1147
SphI	GCATGC	1 cut(s)	146
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	6 cut(s)	163, 186, 188, 226, 744, 1487
SspDI	GGCGCC	1 cut(s)	385
SspI	AATATT	1 cut(s)	1378
SspMI	CTAG	7 cut(s)	429, 573, 992, 1082, 1122, 1230, 1605
SstI	GAGCTC	2 cut(s)	307, 320
StuI	AGGCCT	1 cut(s)	422
StyD4I	CCNGG	3 cut(s)	284, 902, 1537
StyI	CCWWGG	1 cut(s)	1162
TaaI	ACNGT	3 cut(s)	1281, 1739, 1889
TaiI	ACGT	3 cut(s)	460, 1396, 1701
TaqI	TCGA	7 cut(s)	361, 696, 924, 1236, 1257, 1454, 1795
TatI	WGTACW	1 cut(s)	1772
TauI	GCSGC	2 cut(s)	188, 191
TfiI	GAWTC	2 cut(s)	204, 1233
Tru1I	TTAA	6 cut(s)	24, 1209, 1652, 1766, 1803, 1847
Tru9I	TTAA	6 cut(s)	24, 1209, 1652, 1766, 1803, 1847
TscAI	CASTG	2 cut(s)	1051, 1744
TseFI	GTSAC	3 cut(s)	86, 826, 1829
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	3 cut(s)	86, 826, 1829
TspDTI	ATGAA	7 cut(s)	68, 142, 452, 552, 1526, 1562, 1590
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	2 cut(s)	1051, 1744
Tth111I	GACNNNGTC	1 cut(s)	864
VpaK11BI	GGWCC	1 cut(s)	1885
VspI	ATTAAT	2 cut(s)	24, 1209
XapI	RAATTY	5 cut(s)	261, 637, 1577, 1638, 1857
XbaI	TCTAGA	2 cut(s)	428, 1604
XceI	RCATGY	2 cut(s)	146, 1462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1910
XspI	CTAG	7 cut(s)	429, 573, 992, 1082, 1122, 1230, 1605
Zsp2I	ATGCAT	2 cut(s)	1062, 1468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.