pycom10g14610

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
17968854 .. 17970761
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g14610.1

Sequence Viewer

Length: 1800 bp
ATGACCCCCACCATCTGCAACCCCACAATTCCGCCTCCCTCTCACCCATCTTCCCTCTGCCCACAAATTACATCATGCAAAACCATCAGAGACCTGCACCAAGTCCACGCCCACTTCATCAAAACCCGCCAAATCCATGACCCCCTCGCCGCCGCCGAAATCCTCCGCTTCTACGCCCTCTCAACCCACCGCAGTATCCAATGCACCCGATCAGTTTTCACCCAAATGGAGAAGCCCAATTGCTTTTCTTGGAACACAATCATCAGAGCTCTCGCAGAGAGCTCTGTTAACGACCACTCGCACGGTGCCCTCTTCTTCTTTTCTCAAATTGTTGCTGATGGTTCTGCGGGACCCAATAAGTTCACCTTCCCCTCTGTGCTCAAAGCCTGTGCAAAAATGGGGAATCTTGAGGTGGGTAAGTGTGTTCATGGCATGGCTGTGAAGTTTGGATTGGAAAATGATGGGTTTGTTGTGAGCAATCTTGTGAGGATGTATGTAATGTGTGAGCATGAGGGCAATGTAGTTTTGTGGAATGTGCTTGTTGATGGGTGTGTAAGACTTCGGGATTTTAGAGCTGCCAGGGAGCTGTTTGATAAAATTCCTCAGAGAAGTGTGGTGTCGTGGAATGCAATGATATCTGGGTACACACAACACGGGCTTTTTAAGGAGGCTGTGGAAATGTTCCGGGATATGCAGATTGGGAATGTGTGTCCAAATTATGTGACTTTGGTTAGTGGAAGTGGATACATTTGTATGCCGATAAGAATGGAATCGGGATTGATGATGTGCTCGGTTCTGCTTTGGTTGATATGTGGTAAGTGTGGGAGCATTGAGGACGCTCTTCGAGTTTTTAAGCAACTGTCTAAAAGGAATGTGATTACTTGGAATGCCATAATCAGTGGGCTTGCTATGCACAGTCGAGTTGATGATGCACTGGATTATTTTTCCAAGATGGAACGAGCTGGTGTGGTGCCTAGTGATGTAACATATATTGGTATCTTGAGTGCTTGTAGCCATGCTGGTTTGGTGGAGAAGGGAAGAGCATTCTTCATCCATATGATTGATGTAATTGGCTTAGAACCTAGAGTTGAACATTATGGTTGTATGGTTGATTTATTAGGTCGTGCCGGATTGTTAGAAGAAGCTGAAGAGCTTATATTAAACATGCCAATTCAGCCGGATGATGTCACATGGAAGGCCTTGCTCTGTGCTTGCAAGATGCAAGGGAACATCGAGATGGGCAAACGTGTGGCAGAGATTTTGATGGACTTGGCTCCTCATGATAGCGGATCCTACATTGCTCTCTCAAACATGTATGCCTCTTTAGGAAATTGGGAGGCAGTTGCAAATGTGAGATTGCGGATGAAAGATATGGACATTAGGAAAGATCCTGGAGGTAGCTCCATTGAGCTTGATGGAGCAATTCACGAGTTTGTGGTGGAAGACGAATCCCATCCTAGAGCCGGAGAAATCCATTCAATGTTGGAGGAAATTTCTGAAAAATTGAGCTTGGAAGTCCATAGACCTAACACCACACGAGTGTTGCTCAACATGGATGAAGAAGAAAAACAAAGTGCATTACATTACCATAGCGAAAAGATTGCAACTGCCTTCGGCTTAATCAGTACAGCCCCTCGAACCAGTCTTCAAATTTTTAAGAACCTACGCATATGCGAAGATTGTCACTCTTCGATAAAGTTGATCGATCTGAAAAGTTATAAACGCAAGATTGTTGTCAAGGATCGGAAGCGCTTCCACCACTTCGAAAATGGTTTATGCTCTTGCAAGGATTACTGGTAA

Protein Analysis

600

Amino Acids

67.19

Weight (kDa)

6.68

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 204 - 242 1.5e-09 PPR repeat family
PPR_1 PF12854 204 - 232 5.9e-06 PPR repeat
PPR PF01535 206 - 232 7.7e-09 PPR repeat
PPR_2 PF13041 290 - 338 1e-11 PPR repeat family
PPR PF01535 293 - 323 1.2e-06 PPR repeat
E_motif PF20431 410 - 470 1.4e-15 E motif
DYW_deaminase PF14432 507 - 599 2.4e-34 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013442)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1719
Acc36I ACCTGC 1 cut(s) 102
AccB1I GGYRCC 2 cut(s) 305, 970
AciI CCGC 9 cut(s) 32, 127, 150, 153, 166, 190, 347, 1287, 1360
AclWI GGATC 4 cut(s) 1284, 1297, 1382, 1749
AcsI RAATTY 3 cut(s) 597, 1491, 1650
AcuI CTGAAG 1 cut(s) 1167
AfaI GTAC 2 cut(s) 644, 1627
AfeI AGCGCT 1 cut(s) 1751
AfiI CCNNNNNNNGG 1 cut(s) 1463
AflIII ACRYGT 2 cut(s) 1246, 1311
AgsI TTSAA 3 cut(s) 1091, 1479, 1649
AjnI CCWGG 2 cut(s) 578, 1390
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AleI CACNNNNGTG 1 cut(s) 1538
Alw21I GWGCWC 4 cut(s) 271, 284, 381, 791
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 4 cut(s) 1284, 1297, 1382, 1749
Aor51HI AGCGCT 1 cut(s) 1751
AoxI GGCC 1 cut(s) 1197
ApeKI GCWGC 1 cut(s) 575
ApoI RAATTY 3 cut(s) 597, 1491, 1650
Asp700I GAANNNNTTC 1 cut(s) 1751
AspLEI GCGC 1 cut(s) 1752
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 686
AsuHPI GGTGA 3 cut(s) 35, 211, 355
AsuII TTCGAA 1 cut(s) 1764
AvaII GGWCC 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 310
BaeI ACNNNNGTAYC 4 cut(s) 178, 211, 736, 769
BamHI GGATCC 1 cut(s) 1289
BanI GGYRCC 2 cut(s) 305, 970
BanII GRGCYC 2 cut(s) 271, 284
BauI CACGAG 2 cut(s) 1427, 1536
BbsI GAAGAC 2 cut(s) 1449, 1637
Bbv12I GWGCWC 4 cut(s) 271, 284, 381, 791
BbvI GCAGC 1 cut(s) 562
BcgI CGANNNNNNTGC 2 cut(s) 1583, 1617
BciT130I CCWGG 2 cut(s) 580, 1392
BciVI GTATCC 2 cut(s) 206, 737
BcnI CCSGG 1 cut(s) 686
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 3 cut(s) 975, 1083, 1458
BfoI RGCGCY 1 cut(s) 1753
BfuAI ACCTGC 1 cut(s) 102
BfuI GTATCC 2 cut(s) 206, 737
BisI GCNGC 3 cut(s) 150, 153, 576
BlsI GCNGC 3 cut(s) 151, 154, 577
Bme1390I CCNGG 3 cut(s) 580, 686, 1392
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 6 cut(s) 307, 351, 352, 972, 1275, 1291
BmrFI CCNGG 3 cut(s) 580, 686, 1392
BmsI GCATC 2 cut(s) 919, 1209
BpiI GAAGAC 2 cut(s) 1449, 1637
BplI GAGNNNNNCTC 2 cut(s) 1530, 1562
BpmI CTGGAG 1 cut(s) 1413
Bpu14I TTCGAA 1 cut(s) 1764
BpuEI CTTGAG 2 cut(s) 428, 1021
BpuMI CCSGG 1 cut(s) 686
Bsa29I ATCGAT 1 cut(s) 1704
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 579
Bsc4I CCNNNNNNNGG 1 cut(s) 1463
Bse1I ACTGG 3 cut(s) 939, 1641, 1799
Bse3DI GCAATG 3 cut(s) 523, 636, 1296
BseBI CCWGG 2 cut(s) 580, 1392
BseCI ATCGAT 1 cut(s) 1704
BseDI CCNNGG 1 cut(s) 579
BseGI GGATG 6 cut(s) 495, 1050, 1186, 1368, 1453, 1561
BseLI CCNNNNNNNGG 1 cut(s) 1463
BseMI GCAATG 3 cut(s) 523, 636, 1296
BseMII CTCAG 1 cut(s) 617
BseNI ACTGG 3 cut(s) 939, 1641, 1799
BseRI GAGGAG 1 cut(s) 1266
BseSI GKGCMC 1 cut(s) 310
BseXI GCAGC 1 cut(s) 562
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 1 cut(s) 1199
BshNI GGYRCC 2 cut(s) 305, 970
BshVI ATCGAT 1 cut(s) 1704
BsiHKAI GWGCWC 4 cut(s) 271, 284, 381, 791
BsiSI CCGG 4 cut(s) 685, 1128, 1178, 1464
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 1 cut(s) 1463
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 363
BsmI GAATGC 3 cut(s) 631, 892, 1043
BsnI GGCC 1 cut(s) 1199
Bso31I GGTCTC 1 cut(s) 84
Bsp119I TTCGAA 1 cut(s) 1764
Bsp1286I GDGCHC 5 cut(s) 271, 284, 310, 381, 791
Bsp143I GATC 6 cut(s) 209, 1289, 1387, 1701, 1705, 1741
BspACI CCGC 9 cut(s) 32, 127, 150, 153, 166, 190, 347, 1287, 1360
BspANI GGCC 1 cut(s) 1199
BspCNI CTCAG 1 cut(s) 616
BspDI ATCGAT 1 cut(s) 1704
BspHI TCATGA 1 cut(s) 1279
BspLI GGNNCC 6 cut(s) 307, 351, 352, 972, 1275, 1291
BspMI ACCTGC 1 cut(s) 102
BspPI GGATC 4 cut(s) 1284, 1297, 1382, 1749
BspQI GCTCTTC 3 cut(s) 846, 1033, 1143
BspT104I TTCGAA 1 cut(s) 1764
BspT107I GGYRCC 2 cut(s) 305, 970
BspTNI GGTCTC 1 cut(s) 84
BsrDI GCAATG 3 cut(s) 523, 636, 1296
BsrI ACTGG 3 cut(s) 939, 1641, 1799
BssECI CCNNGG 1 cut(s) 579
BssMI GATC 6 cut(s) 209, 1289, 1387, 1701, 1705, 1741
BssSI CACGAG 2 cut(s) 1427, 1536
Bst2BI CACGAG 2 cut(s) 1427, 1536
Bst2UI CCWGG 2 cut(s) 580, 1392
Bst4CI ACNGT 3 cut(s) 305, 861, 917
Bst6I CTCTTC 5 cut(s) 317, 846, 1033, 1143, 1693
BstBI TTCGAA 1 cut(s) 1764
BstC8I GCNNGC 2 cut(s) 906, 1213
BstDEI CTNAG 2 cut(s) 603, 1075
BstF5I GGATG 6 cut(s) 495, 1050, 1186, 1368, 1453, 1561
BstH2I RGCGCY 1 cut(s) 1753
BstHHI GCGC 1 cut(s) 1752
BstKTI GATC 6 cut(s) 212, 1292, 1390, 1704, 1708, 1744
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 6 cut(s) 209, 1289, 1387, 1701, 1705, 1741
BstMWI GCNNNNNNNGC 2 cut(s) 910, 1174
BstNI CCWGG 2 cut(s) 580, 1392
BstNSI RCATGY 2 cut(s) 1168, 1315
BstSCI CCNGG 3 cut(s) 578, 684, 1390
BstSLI GKGCMC 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 562
BstV2I GAAGAC 2 cut(s) 1449, 1637
BstX2I RGATCY 2 cut(s) 1289, 1387
BstYI RGATCY 2 cut(s) 1289, 1387
Bsu15I ATCGAT 1 cut(s) 1704
BsuI GTATCC 2 cut(s) 206, 737
BsuRI GGCC 1 cut(s) 1199
BsuTUI ATCGAT 1 cut(s) 1704
BtsCI GGATG 6 cut(s) 495, 1050, 1186, 1368, 1453, 1561
BtsIMutI CAGTG 2 cut(s) 904, 932
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 906, 1213
CciI TCATGA 1 cut(s) 1279
CfoI GCGC 1 cut(s) 1752
Cfr13I GGNCC 1 cut(s) 350
ClaI ATCGAT 1 cut(s) 1704
CseI GACGC 1 cut(s) 845
Csp6I GTAC 2 cut(s) 643, 1626
CviQI GTAC 2 cut(s) 643, 1626
DdeI CTNAG 2 cut(s) 603, 1075
DpnI GATC 6 cut(s) 211, 1291, 1389, 1703, 1707, 1743
DpnII GATC 6 cut(s) 209, 1289, 1387, 1701, 1705, 1741
Eam1104I CTCTTC 5 cut(s) 317, 846, 1033, 1143, 1693
EarI CTCTTC 5 cut(s) 317, 846, 1033, 1143, 1693
EciI GGCGGA 1 cut(s) 21
Ecl136II GAGCTC 2 cut(s) 269, 282
Eco147I AGGCCT 1 cut(s) 1199
Eco24I GRGCYC 2 cut(s) 271, 284
Eco31I GGTCTC 1 cut(s) 84
Eco32I GATATC 1 cut(s) 636
Eco47I GGWCC 1 cut(s) 350
Eco47III AGCGCT 1 cut(s) 1751
Eco53kI GAGCTC 2 cut(s) 269, 282
Eco57I CTGAAG 1 cut(s) 1167
EcoICRI GAGCTC 2 cut(s) 269, 282
EcoO109I RGGNCCY 1 cut(s) 350
EcoRII CCWGG 2 cut(s) 578, 1390
EcoRV GATATC 1 cut(s) 636
EcoT38I GRGCYC 2 cut(s) 271, 284
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 363
FauI CCCGC 2 cut(s) 134, 340
FauNDI CATATG 2 cut(s) 1056, 1670
Fnu4HI GCNGC 3 cut(s) 150, 153, 576
FokI GGATG 6 cut(s) 502, 1037, 1193, 1375, 1440, 1568
FriOI GRGCYC 2 cut(s) 271, 284
Fsp4HI GCNGC 3 cut(s) 150, 153, 576
FspBI CTAG 3 cut(s) 975, 1083, 1458
GlaI GCGC 1 cut(s) 1751
GluI GCNGC 3 cut(s) 150, 153, 576
GsuI CTGGAG 1 cut(s) 1413
HaeII RGCGCY 1 cut(s) 1753
HaeIII GGCC 1 cut(s) 1199
HapII CCGG 4 cut(s) 685, 1128, 1178, 1464
HgaI GACGC 1 cut(s) 845
HhaI GCGC 1 cut(s) 1752
Hin6I GCGC 1 cut(s) 1750
HinP1I GCGC 1 cut(s) 1750
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 3 cut(s) 403, 770, 1448
HpaI GTTAAC 1 cut(s) 289
HpaII CCGG 4 cut(s) 685, 1128, 1178, 1464
HphI GGTGA 3 cut(s) 35, 211, 355
Hpy166II GTNNAC 4 cut(s) 106, 289, 363, 645
Hpy188I TCNGA 6 cut(s) 89, 266, 606, 1498, 1710, 1746
Hpy188III TCNNGA 7 cut(s) 407, 563, 774, 1000, 1234, 1280, 1427
Hpy8I GTNNAC 4 cut(s) 106, 289, 363, 645
HpyAV CCTTC 4 cut(s) 376, 1027, 1189, 1621
HpyCH4III ACNGT 3 cut(s) 305, 861, 917
HpyCH4IV ACGT 1 cut(s) 1246
HpyF10VI GCNNNNNNNGC 2 cut(s) 910, 1174
HpyF3I CTNAG 2 cut(s) 603, 1075
HpySE526I ACGT 1 cut(s) 1246
HspAI GCGC 1 cut(s) 1750
KflI GGGWCCC 1 cut(s) 350
KspAI GTTAAC 1 cut(s) 289
Kzo9I GATC 6 cut(s) 209, 1289, 1387, 1701, 1705, 1741
LguI GCTCTTC 3 cut(s) 846, 1033, 1143
LmnI GCTCC 5 cut(s) 583, 825, 1279, 1406, 1418
Lsp1109I GCAGC 1 cut(s) 562
LweI GCATC 2 cut(s) 919, 1209
MaeI CTAG 3 cut(s) 975, 1083, 1458
MaeII ACGT 1 cut(s) 1246
MaeIII GTNAC 4 cut(s) 721, 982, 1186, 1682
MalI GATC 6 cut(s) 211, 1291, 1389, 1703, 1707, 1743
MboI GATC 6 cut(s) 209, 1289, 1387, 1701, 1705, 1741
MfeI CAATTG 1 cut(s) 238
MflI RGATCY 2 cut(s) 1289, 1387
MhlI GDGCHC 5 cut(s) 271, 284, 310, 381, 791
MmeI TCCRAC 1 cut(s) 1464
MroXI GAANNNNTTC 1 cut(s) 1751
MseI TTAA 6 cut(s) 288, 663, 852, 1160, 1619, 1656
MslI CAYNNNNRTG 6 cut(s) 224, 437, 752, 1055, 1235, 1538
MspI CCGG 4 cut(s) 685, 1128, 1178, 1464
MspR9I CCNGG 3 cut(s) 580, 686, 1392
MunI CAATTG 1 cut(s) 238
Mva1269I GAATGC 3 cut(s) 631, 892, 1043
MvaI CCWGG 2 cut(s) 580, 1392
MwoI GCNNNNNNNGC 2 cut(s) 910, 1174
NciI CCSGG 1 cut(s) 686
NdeI CATATG 2 cut(s) 1056, 1670
NdeII GATC 6 cut(s) 209, 1289, 1387, 1701, 1705, 1741
NlaIV GGNNCC 6 cut(s) 307, 351, 352, 972, 1275, 1291
NmuCI GTSAC 3 cut(s) 721, 1186, 1682
NspI RCATGY 2 cut(s) 1168, 1315
NspV TTCGAA 1 cut(s) 1764
OliI CACNNNNGTG 1 cut(s) 1538
PagI TCATGA 1 cut(s) 1279
PceI AGGCCT 1 cut(s) 1199
PciI ACATGT 1 cut(s) 1311
PciSI GCTCTTC 3 cut(s) 846, 1033, 1143
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 3 cut(s) 631, 892, 1043
PdmI GAANNNNTTC 1 cut(s) 1751
PfeI GAWTC 3 cut(s) 403, 770, 1448
PfoI TCCNGGA 2 cut(s) 684, 1390
PkrI GCNGC 3 cut(s) 151, 154, 577
PpuMI RGGWCCY 1 cut(s) 350
PscI ACATGT 1 cut(s) 1311
PsiI TTATAA 1 cut(s) 1719
Psp124BI GAGCTC 2 cut(s) 271, 284
Psp5II RGGWCCY 1 cut(s) 350
Psp6I CCWGG 2 cut(s) 578, 1390
PspGI CCWGG 2 cut(s) 578, 1390
PspN4I GGNNCC 6 cut(s) 307, 351, 352, 972, 1275, 1291
PspPI GGNCC 1 cut(s) 350
PspPPI RGGWCCY 1 cut(s) 350
PsuI RGATCY 2 cut(s) 1289, 1387
RsaI GTAC 2 cut(s) 644, 1627
RsaNI GTAC 2 cut(s) 643, 1626
RseI CAYNNNNRTG 6 cut(s) 224, 437, 752, 1055, 1235, 1538
SacI GAGCTC 2 cut(s) 271, 284
SapI GCTCTTC 3 cut(s) 846, 1033, 1143
SaqAI TTAA 6 cut(s) 288, 663, 852, 1160, 1619, 1656
SatI GCNGC 3 cut(s) 150, 153, 576
Sau3AI GATC 6 cut(s) 209, 1289, 1387, 1701, 1705, 1741
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 3 cut(s) 580, 686, 1392
SduI GDGCHC 5 cut(s) 271, 284, 310, 381, 791
SfaNI GCATC 2 cut(s) 919, 1209
SfuI TTCGAA 1 cut(s) 1764
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 6 cut(s) 224, 437, 752, 1055, 1235, 1538
SmlI CTYRAG 2 cut(s) 407, 1000
SmoI CTYRAG 2 cut(s) 407, 1000
SseBI AGGCCT 1 cut(s) 1199
SsiI CCGC 9 cut(s) 32, 127, 150, 153, 166, 190, 347, 1287, 1360
SspMI CTAG 3 cut(s) 975, 1083, 1458
SstI GAGCTC 2 cut(s) 271, 284
StuI AGGCCT 1 cut(s) 1199
StyD4I CCNGG 3 cut(s) 578, 684, 1390
TaaI ACNGT 3 cut(s) 305, 861, 917
TaiI ACGT 1 cut(s) 1249
TaqI TCGA 7 cut(s) 844, 919, 1233, 1636, 1691, 1704, 1764
TatI WGTACW 1 cut(s) 1625
TauI GCSGC 2 cut(s) 152, 155
TfiI GAWTC 3 cut(s) 403, 770, 1448
Tru1I TTAA 6 cut(s) 288, 663, 852, 1160, 1619, 1656
Tru9I TTAA 6 cut(s) 288, 663, 852, 1160, 1619, 1656
TscAI CASTG 2 cut(s) 904, 939
TseFI GTSAC 3 cut(s) 721, 1186, 1682
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 3 cut(s) 721, 1186, 1682
TspDTI ATGAA 5 cut(s) 106, 416, 1039, 1379, 1572
TspRI CASTG 2 cut(s) 904, 939
VpaK11BI GGWCC 1 cut(s) 350
XapI RAATTY 3 cut(s) 597, 1491, 1650
XceI RCATGY 2 cut(s) 1168, 1315
XcmI CCANNNNNNNNNTGG 1 cut(s) 1766
XmnI GAANNNNTTC 1 cut(s) 1751
XspI CTAG 3 cut(s) 975, 1083, 1458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.