Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G48910 |
| fragaria_vesca | FvH4_2g19560 FvH4_2g19570 |
| malus_domestica | MD05G1179700.v1.1 MD10G1169300.v1.1 |
| prunus_persica | Prupe.6G095600_v2.0.a1 Prupe.8G207000_v2.0.a1 |
| pyrus_communis | pycom05g16620 pycom10g14610 |
| rosa_chinensis | RchiOBHm_Chr6g0285331 |
| rosa_laevigata | RLG00000012653 |
| rosa_multiflora | Rmu_sc0011958.1_g000003 |
| rosa_roxburghii | Rroxscaffold_7G00183350 |
| rosa_rugosa | Rorug06G0173600 |
| rosa_samantha | Rh6AG284300 Rh6BG285100 Rh6DG279600 |
| rosa_wichuraiana | Rw6G024470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 516 |
| AccB1I | GGYRCC | 1 cut(s) | 343 |
| AccI | GTMKAC | 1 cut(s) | 192 |
| AciI | CCGC | 3 cut(s) | 24, 121, 144 |
| AclWI | GGATC | 1 cut(s) | 275 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 298, 408 |
| AgsI | TTSAA | 2 cut(s) | 214, 376 |
| AjnI | CCWGG | 1 cut(s) | 242 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 428, 460 |
| AluBI | AGCT | 3 cut(s) | 263, 276, 649 |
| AluI | AGCT | 3 cut(s) | 263, 276, 649 |
| Alw21I | GWGCWC | 3 cut(s) | 265, 278, 291 |
| Alw26I | GTCTC | 2 cut(s) | 36, 613 |
| AlwI | GGATC | 1 cut(s) | 275 |
| Ama87I | CYCGRG | 1 cut(s) | 402 |
| ApeKI | GCWGC | 1 cut(s) | 146 |
| AspLEI | GCGC | 1 cut(s) | 517 |
| AsuHPI | GGTGA | 4 cut(s) | 26, 173, 445, 554 |
| AvaI | CYCGRG | 1 cut(s) | 402 |
| BanI | GGYRCC | 1 cut(s) | 343 |
| BanII | GRGCYC | 2 cut(s) | 265, 278 |
| BauI | CACGAG | 1 cut(s) | 201 |
| Bbv12I | GWGCWC | 3 cut(s) | 265, 278, 291 |
| BbvI | GCAGC | 1 cut(s) | 133 |
| BccI | CCATC | 6 cut(s) | 20, 49, 260, 326, 421, 602 |
| BceAI | ACGGC | 1 cut(s) | 654 |
| BciT130I | CCWGG | 1 cut(s) | 244 |
| BcoDI | GTCTC | 2 cut(s) | 36, 613 |
| BfaI | CTAG | 2 cut(s) | 387, 531 |
| BisI | GCNGC | 2 cut(s) | 144, 147 |
| BlsI | GCNGC | 2 cut(s) | 145, 148 |
| Bme1390I | CCNGG | 1 cut(s) | 244 |
| BmeT110I | CYCGRG | 1 cut(s) | 402 |
| BmiI | GGNNCC | 1 cut(s) | 345 |
| BmrFI | CCNGG | 1 cut(s) | 244 |
| BmsI | GCATC | 1 cut(s) | 502 |
| BpmI | CTGGAG | 1 cut(s) | 160 |
| Bpu10I | CCTNAGC | 1 cut(s) | 285 |
| BpuEI | CTTGAG | 1 cut(s) | 317 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 158, 188, 526, 556 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 298, 408 |
| Bse1I | ACTGG | 1 cut(s) | 177 |
| BseBI | CCWGG | 1 cut(s) | 244 |
| BseGI | GGATG | 2 cut(s) | 432, 489 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 298, 408 |
| BseMII | CTCAG | 1 cut(s) | 276 |
| BseNI | ACTGG | 1 cut(s) | 177 |
| BseXI | GCAGC | 1 cut(s) | 133 |
| BshNI | GGYRCC | 1 cut(s) | 343 |
| BsiHKAI | GWGCWC | 3 cut(s) | 265, 278, 291 |
| BsiHKCI | CYCGRG | 1 cut(s) | 402 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 298, 408 |
| BsmAI | GTCTC | 2 cut(s) | 36, 613 |
| BsmI | GAATGC | 2 cut(s) | 403, 694 |
| BsoBI | CYCGRG | 1 cut(s) | 402 |
| Bsp1286I | GDGCHC | 3 cut(s) | 265, 278, 291 |
| Bsp143I | GATC | 1 cut(s) | 280 |
| BspACI | CCGC | 3 cut(s) | 24, 121, 144 |
| BspCNI | CTCAG | 1 cut(s) | 277 |
| BspLI | GGNNCC | 1 cut(s) | 345 |
| BspPI | GGATC | 1 cut(s) | 275 |
| BspT107I | GGYRCC | 1 cut(s) | 343 |
| BsrI | ACTGG | 1 cut(s) | 177 |
| BssMI | GATC | 1 cut(s) | 280 |
| BssSI | CACGAG | 1 cut(s) | 201 |
| Bst2BI | CACGAG | 1 cut(s) | 201 |
| Bst2UI | CCWGG | 1 cut(s) | 244 |
| Bst4CI | ACNGT | 1 cut(s) | 51 |
| BstDEI | CTNAG | 1 cut(s) | 285 |
| BstF5I | GGATG | 2 cut(s) | 432, 489 |
| BstHHI | GCGC | 1 cut(s) | 517 |
| BstKTI | GATC | 1 cut(s) | 283 |
| BstMAI | GTCTC | 2 cut(s) | 36, 613 |
| BstMBI | GATC | 1 cut(s) | 280 |
| BstNI | CCWGG | 1 cut(s) | 244 |
| BstNSI | RCATGY | 3 cut(s) | 72, 384, 617 |
| BstSCI | CCNGG | 1 cut(s) | 242 |
| BstV1I | GCAGC | 1 cut(s) | 133 |
| BtsCI | GGATG | 2 cut(s) | 432, 489 |
| CfoI | GCGC | 1 cut(s) | 517 |
| CviAII | CATG | 6 cut(s) | 69, 101, 197, 381, 422, 614 |
| CviJI | RGCY | 4 cut(s) | 263, 276, 302, 649 |
| CviKI_1 | RGCY | 4 cut(s) | 263, 276, 302, 649 |
| DdeI | CTNAG | 1 cut(s) | 285 |
| DpnI | GATC | 1 cut(s) | 282 |
| DpnII | GATC | 1 cut(s) | 280 |
| Ecl136II | GAGCTC | 2 cut(s) | 263, 276 |
| Eco24I | GRGCYC | 2 cut(s) | 265, 278 |
| Eco32I | GATATC | 1 cut(s) | 699 |
| Eco53kI | GAGCTC | 2 cut(s) | 263, 276 |
| Eco88I | CYCGRG | 1 cut(s) | 402 |
| EcoICRI | GAGCTC | 2 cut(s) | 263, 276 |
| EcoRII | CCWGG | 1 cut(s) | 242 |
| EcoRV | GATATC | 1 cut(s) | 699 |
| EcoT38I | GRGCYC | 2 cut(s) | 265, 278 |
| FaeI | CATG | 6 cut(s) | 72, 104, 200, 384, 425, 617 |
| FatI | CATG | 6 cut(s) | 68, 100, 196, 380, 421, 613 |
| FauI | CCCGC | 2 cut(s) | 31, 128 |
| FblI | GTMKAC | 1 cut(s) | 192 |
| Fnu4HI | GCNGC | 2 cut(s) | 144, 147 |
| FokI | GGATG | 2 cut(s) | 439, 496 |
| FriOI | GRGCYC | 2 cut(s) | 265, 278 |
| Fsp4HI | GCNGC | 2 cut(s) | 144, 147 |
| FspAI | RTGCGCAY | 1 cut(s) | 516 |
| FspBI | CTAG | 2 cut(s) | 387, 531 |
| FspI | TGCGCA | 1 cut(s) | 516 |
| GlaI | GCGC | 1 cut(s) | 516 |
| GluI | GCNGC | 2 cut(s) | 144, 147 |
| GsuI | CTGGAG | 1 cut(s) | 160 |
| HhaI | GCGC | 1 cut(s) | 517 |
| Hin1II | CATG | 6 cut(s) | 72, 104, 200, 384, 425, 617 |
| Hin6I | GCGC | 1 cut(s) | 515 |
| HinP1I | GCGC | 1 cut(s) | 515 |
| HinfI | GANTC | 1 cut(s) | 162 |
| HphI | GGTGA | 4 cut(s) | 26, 173, 445, 554 |
| Hpy166II | GTNNAC | 1 cut(s) | 193 |
| Hpy188I | TCNGA | 3 cut(s) | 161, 260, 280 |
| Hpy188III | TCNNGA | 2 cut(s) | 284, 387 |
| Hpy8I | GTNNAC | 1 cut(s) | 193 |
| HpyAV | CCTTC | 2 cut(s) | 370, 375 |
| HpyCH4III | ACNGT | 1 cut(s) | 51 |
| HpyCH4V | TGCA | 3 cut(s) | 72, 91, 704 |
| HpyF3I | CTNAG | 1 cut(s) | 285 |
| Hsp92II | CATG | 6 cut(s) | 72, 104, 200, 384, 425, 617 |
| HspAI | GCGC | 1 cut(s) | 515 |
| Kzo9I | GATC | 1 cut(s) | 280 |
| LmnI | GCTCC | 1 cut(s) | 646 |
| LpnPI | CCDG | 4 cut(s) | 190, 229, 256, 297 |
| Lsp1109I | GCAGC | 1 cut(s) | 133 |
| LweI | GCATC | 1 cut(s) | 502 |
| MaeI | CTAG | 2 cut(s) | 387, 531 |
| MaeIII | GTNAC | 1 cut(s) | 179 |
| MalI | GATC | 1 cut(s) | 282 |
| MboI | GATC | 1 cut(s) | 280 |
| MboII | GAAGA | 4 cut(s) | 36, 521, 577, 580 |
| MfeI | CAATTG | 1 cut(s) | 232 |
| MhlI | GDGCHC | 3 cut(s) | 265, 278, 291 |
| MluCI | AATT | 1 cut(s) | 232 |
| MmeI | TCCRAC | 1 cut(s) | 426 |
| MnlI | CCTC | 9 cut(s) | 89, 147, 167, 182, 292, 474, 568, 636, 675 |
| MslI | CAYNNNNRTG | 2 cut(s) | 186, 201 |
| MspA1I | CMGCKG | 1 cut(s) | 146 |
| MspR9I | CCNGG | 1 cut(s) | 244 |
| MunI | CAATTG | 1 cut(s) | 232 |
| Mva1269I | GAATGC | 2 cut(s) | 403, 694 |
| MvaI | CCWGG | 1 cut(s) | 244 |
| NdeII | GATC | 1 cut(s) | 280 |
| NlaIII | CATG | 6 cut(s) | 72, 104, 200, 384, 425, 617 |
| NlaIV | GGNNCC | 1 cut(s) | 345 |
| NmeAIII | GCCGAG | 1 cut(s) | 295 |
| NmuCI | GTSAC | 1 cut(s) | 179 |
| NsbI | TGCGCA | 1 cut(s) | 516 |
| NspI | RCATGY | 3 cut(s) | 72, 384, 617 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 147 |
| PctI | GAATGC | 2 cut(s) | 403, 694 |
| PfeI | GAWTC | 1 cut(s) | 162 |
| PfoI | TCCNGGA | 1 cut(s) | 242 |
| PkrI | GCNGC | 2 cut(s) | 145, 148 |
| Psp124BI | GAGCTC | 2 cut(s) | 265, 278 |
| Psp6I | CCWGG | 1 cut(s) | 242 |
| PspGI | CCWGG | 1 cut(s) | 242 |
| PspN4I | GGNNCC | 1 cut(s) | 345 |
| RseI | CAYNNNNRTG | 2 cut(s) | 186, 201 |
| SacI | GAGCTC | 2 cut(s) | 265, 278 |
| SatI | GCNGC | 2 cut(s) | 144, 147 |
| Sau3AI | GATC | 1 cut(s) | 280 |
| ScrFI | CCNGG | 1 cut(s) | 244 |
| SduI | GDGCHC | 3 cut(s) | 265, 278, 291 |
| SetI | ASST | 4 cut(s) | 265, 278, 544, 651 |
| SfaNI | GCATC | 1 cut(s) | 502 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 186, 201 |
| SmlI | CTYRAG | 1 cut(s) | 296 |
| SmoI | CTYRAG | 1 cut(s) | 296 |
| Sse9I | AATT | 1 cut(s) | 232 |
| SsiI | CCGC | 3 cut(s) | 24, 121, 144 |
| SspMI | CTAG | 2 cut(s) | 387, 531 |
| SstI | GAGCTC | 2 cut(s) | 265, 278 |
| StyD4I | CCNGG | 1 cut(s) | 242 |
| TaaI | ACNGT | 1 cut(s) | 51 |
| TasI | AATT | 1 cut(s) | 232 |
| TauI | GCSGC | 1 cut(s) | 146 |
| TfiI | GAWTC | 1 cut(s) | 162 |
| TseFI | GTSAC | 1 cut(s) | 179 |
| TseI | GCWGC | 1 cut(s) | 146 |
| Tsp45I | GTSAC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 4 cut(s) | 17, 100, 305, 410 |
| XbaI | TCTAGA | 1 cut(s) | 386 |
| XceI | RCATGY | 3 cut(s) | 72, 384, 617 |
| XmiI | GTMKAC | 1 cut(s) | 192 |
| XspI | CTAG | 2 cut(s) | 387, 531 |