Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0013442

Physical Location & Seq

Genomic Coordinates Reverse (-)

48002001 .. 48005160

Gene Structure 3160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG284300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAAGTCCTCCACCATCTACAACCCCACAACTCCTCACCCATCTTCACAATTCCCACAAATCAAAACGTGCAAAACCTTGAAAGACTTGCAACAAGTGCATGCCCACTTCATCAAAACCCGCCAAATCCACGACCCTCTTGCCGCGGCCGAAATCCTCCGATTCTACGCCCTCTCAAATCACCGCAACATTGAGTATGCTCGTGCCGTGTTCAACCAAATTCAGACACCCAATTGCTTCTCCTGGAACACCATCGTCAGAGCTCTTGCCGAGAGCTCTGTTTCCGAGCACCCACTTGAGGCTCTGTTCTTGTTTTATCGAATGATTTGCGATGGTTTGGTGGCGCCAAATAAGTTCACATTTCCTTCTGTGTTGAAGGCCTGTTCTAGAATAGGGAATGCTCAGGTTGGCAGAAGTGTTCACGGGATGGTTGTGAAGTATGGGTTGGATGATGATGAGTTTGTTGTGAGTAGTCTTGTGAGGATGAGTGTAGCTGACTGTGGTGATTTGAATGAGAAGAAGCAAGAGGGTAATGTGGTTTTGTGGAATTTGATAGTTGATGGCCATGTGAGACTCGGGGAGTTTGGAGCTGCACGGGAGCTGTTCGACAAAATGCCTCAAAGAAGTGTTGTTTCGTGGAATGCGATGATATCCGCGTATGCGCAAAATGGGTTCTTTAGGGAAGCCGTAGAAATGTTCCGTGATATGCAGATTGGGGATGTATGCCCAAATTATGTGACTTTGGTTAGCGCCTTGCCTGCGATAGCACGACTTGGTGTGCTTGAATTGGGGAAATGGGTGCATTTGTATGCCGGGAAGCATAAGATTGGGATCGATGATGTGCTTGGTTCTGCTTTGGTTGATATGTATTCCAAGTGTGGCGACATTGAGAAGGCGCTTCTAGTTTTTGAGCAACTGCCTAAAAAGAATGTGATCACTTGGAATGCCATAATCAGTGGGCTTGCTATGCATGGTAGAGGAAAGGATGCACTAGATTATTTTTCAAAGATGGAAAGAGCTGATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

342

Amino Acids

38.28

Weight (kDa)

8.1

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	209 - 248	1.1e-08	PPR repeat family
PPR	PF01535	211 - 237	2.9e-09	PPR repeat
PPR_2	PF13041	309 - 340	4.6e-06	PPR repeat family
PPR	PF01535	312 - 341	1.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48910
fragaria_vesca	FvH4_2g19560 FvH4_2g19570
malus_domestica	MD05G1179700.v1.1 MD10G1169300.v1.1
prunus_persica	Prupe.6G095600_v2.0.a1 Prupe.8G207000_v2.0.a1
pyrus_communis	pycom05g16620 pycom10g14610
rosa_chinensis	RchiOBHm_Chr6g0285331
rosa_laevigata	RLG00000012653
rosa_multiflora	Rmu_sc0011958.1_g000003
rosa_roxburghii	Rroxscaffold_7G00183350
rosa_rugosa	Rorug06G0173600
rosa_samantha	Rh6AG284300 Rh6BG285100 Rh6DG279600
rosa_wichuraiana	Rw6G024470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	343
AccII	CGCG	2 cut(s)	146, 656
AciI	CCGC	5 cut(s)	121, 144, 146, 184, 654
AclWI	GGATC	1 cut(s)	839
AcoI	YGGCCR	2 cut(s)	147, 562
AcsI	RAATTY	2 cut(s)	219, 547
AcyI	GRCGYC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	6 cut(s)	82, 214, 376, 511, 785, 1005
AjnI	CCWGG	1 cut(s)	242
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AluBI	AGCT	6 cut(s)	263, 276, 494, 590, 601, 1019
AluI	AGCT	6 cut(s)	263, 276, 494, 590, 601, 1019
Alw21I	GWGCWC	3 cut(s)	265, 278, 291
Alw26I	GTCTC	1 cut(s)	565
AlwI	GGATC	1 cut(s)	839
Ama87I	CYCGRG	1 cut(s)	575
AoxI	GGCC	3 cut(s)	147, 378, 562
ApeKI	GCWGC	1 cut(s)	590
ApoI	RAATTY	2 cut(s)	219, 547
AspLEI	GCGC	4 cut(s)	346, 664, 752, 898
AsuC2I	CCSGG	1 cut(s)	814
AsuHPI	GGTGA	3 cut(s)	29, 173, 515
AvaI	CYCGRG	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	564
BanI	GGYRCC	1 cut(s)	343
BanII	GRGCYC	2 cut(s)	265, 278
BauI	CACGAG	1 cut(s)	201
Bbv12I	GWGCWC	3 cut(s)	265, 278, 291
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	7 cut(s)	23, 49, 260, 326, 421, 554, 1003
BceAI	ACGGC	2 cut(s)	191, 671
BcgI	CGANNNNNNTGC	4 cut(s)	122, 156, 309, 343
BciT130I	CCWGG	1 cut(s)	244
BclI	TGATCA	1 cut(s)	933
BcnI	CCSGG	1 cut(s)	814
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	3 cut(s)	387, 902, 992
BfoI	RGCGCY	3 cut(s)	347, 753, 899
BisI	GCNGC	3 cut(s)	144, 147, 591
BlsI	GCNGC	3 cut(s)	145, 148, 592
Bme1390I	CCNGG	2 cut(s)	244, 814
BmeT110I	CYCGRG	1 cut(s)	575
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	2 cut(s)	244, 814
BmsI	GCATC	1 cut(s)	976
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	814
Bsa29I	ATCGAT	1 cut(s)	834
BsaBI	GATNNNNATC	1 cut(s)	830
BsaHI	GRCGYC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse8I	GATNNNNATC	1 cut(s)	830
BseBI	CCWGG	1 cut(s)	244
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	5 cut(s)	432, 454, 489, 724, 991
BseJI	GATNNNNATC	1 cut(s)	830
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	416
BseRI	GAGGAG	1 cut(s)	24
BseX3I	CGGCCG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	577
BsgI	GTGCAG	1 cut(s)	576
Bsh1236I	CGCG	2 cut(s)	146, 656
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	149, 380, 564
BshNI	GGYRCC	1 cut(s)	343
BshVI	ATCGAT	1 cut(s)	834
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	3 cut(s)	265, 278, 291
BsiHKCI	CYCGRG	1 cut(s)	575
BsiSI	CCGG	1 cut(s)	813
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	565
BsmI	GAATGC	3 cut(s)	403, 646, 949
BsnI	GGCC	3 cut(s)	149, 380, 564
BsoBI	CYCGRG	1 cut(s)	575
Bsp1286I	GDGCHC	3 cut(s)	265, 278, 291
Bsp143I	GATC	2 cut(s)	831, 933
BspACI	CCGC	5 cut(s)	121, 144, 146, 184, 654
BspANI	GGCC	3 cut(s)	149, 380, 564
BspCNI	CTCAG	1 cut(s)	415
BspDI	ATCGAT	1 cut(s)	834
BspFNI	CGCG	2 cut(s)	146, 656
BspLI	GGNNCC	1 cut(s)	345
BspPI	GGATC	1 cut(s)	839
BspT107I	GGYRCC	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	831, 933
BssNI	GRCGYC	1 cut(s)	344
BssSI	CACGAG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	500
BstACI	GRCGYC	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstC8I	GCNNGC	3 cut(s)	102, 759, 963
BstDEI	CTNAG	1 cut(s)	402
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	5 cut(s)	432, 454, 489, 724, 991
BstFNI	CGCG	2 cut(s)	146, 656
BstH2I	RGCGCY	3 cut(s)	347, 753, 899
BstHHI	GCGC	4 cut(s)	346, 664, 752, 898
BstKTI	GATC	2 cut(s)	834, 936
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	2 cut(s)	831, 933
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 758, 967
BstNI	CCWGG	1 cut(s)	244
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	2 cut(s)	242, 812
BstUI	CGCG	2 cut(s)	146, 656
BstV1I	GCAGC	1 cut(s)	577
BstZI	CGGCCG	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	834
BsuRI	GGCC	3 cut(s)	149, 380, 564
BsuTUI	ATCGAT	1 cut(s)	834
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	2 cut(s)	345, 659
BtsCI	GGATG	5 cut(s)	432, 454, 489, 724, 991
BtsIMutI	CAGTG	1 cut(s)	961
Cac8I	GCNNGC	3 cut(s)	102, 759, 963
CfoI	GCGC	4 cut(s)	346, 664, 752, 898
Cfr42I	CCGCGG	1 cut(s)	147
ClaI	ATCGAT	1 cut(s)	834
CviAII	CATG	3 cut(s)	101, 566, 971
DdeI	CTNAG	1 cut(s)	402
DinI	GGCGCC	1 cut(s)	345
DpnI	GATC	2 cut(s)	833, 935
DpnII	GATC	2 cut(s)	831, 933
EaeI	YGGCCR	2 cut(s)	147, 562
EagI	CGGCCG	1 cut(s)	147
Ecl136II	GAGCTC	2 cut(s)	263, 276
EclXI	CGGCCG	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	380
Eco24I	GRGCYC	2 cut(s)	265, 278
Eco32I	GATATC	1 cut(s)	651
Eco52I	CGGCCG	1 cut(s)	147
Eco53kI	GAGCTC	2 cut(s)	263, 276
Eco88I	CYCGRG	1 cut(s)	575
EcoICRI	GAGCTC	2 cut(s)	263, 276
EcoRII	CCWGG	1 cut(s)	242
EcoRV	GATATC	1 cut(s)	651
EcoT22I	ATGCAT	1 cut(s)	972
EcoT38I	GRGCYC	2 cut(s)	265, 278
EgeI	GGCGCC	1 cut(s)	345
EheI	GGCGCC	1 cut(s)	345
FaeI	CATG	3 cut(s)	104, 569, 974
FatI	CATG	3 cut(s)	100, 565, 970
FauI	CCCGC	1 cut(s)	128
FbaI	TGATCA	1 cut(s)	933
Fnu4HI	GCNGC	3 cut(s)	144, 147, 591
FokI	GGATG	5 cut(s)	439, 461, 496, 731, 998
FriOI	GRGCYC	2 cut(s)	265, 278
Fsp4HI	GCNGC	3 cut(s)	144, 147, 591
FspBI	CTAG	3 cut(s)	387, 902, 992
FspI	TGCGCA	1 cut(s)	663
GlaI	GCGC	4 cut(s)	345, 663, 751, 897
GluI	GCNGC	3 cut(s)	144, 147, 591
HaeII	RGCGCY	3 cut(s)	347, 753, 899
HaeIII	GGCC	3 cut(s)	149, 380, 564
HapII	CCGG	1 cut(s)	813
HhaI	GCGC	4 cut(s)	346, 664, 752, 898
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	3 cut(s)	104, 569, 974
Hin6I	GCGC	4 cut(s)	344, 662, 750, 896
HinP1I	GCGC	4 cut(s)	344, 662, 750, 896
HinfI	GANTC	2 cut(s)	162, 573
HpaII	CCGG	1 cut(s)	813
HphI	GGTGA	3 cut(s)	29, 173, 515
Hpy166II	GTNNAC	2 cut(s)	357, 421
Hpy188I	TCNGA	4 cut(s)	161, 225, 260, 286
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	2 cut(s)	357, 421
HpyAV	CCTTC	3 cut(s)	370, 375, 886
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	8 cut(s)	72, 91, 100, 593, 709, 802, 970, 989
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 758, 967
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	68
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	3 cut(s)	104, 569, 974
HspAI	GCGC	4 cut(s)	344, 662, 750, 896
KasI	GGCGCC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	933
KspI	CCGCGG	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	831, 933
LmnI	GCTCC	2 cut(s)	587, 598
LpnPI	CCDG	6 cut(s)	229, 256, 389, 394, 771, 826
Lsp1109I	GCAGC	1 cut(s)	577
LweI	GCATC	1 cut(s)	976
MaeI	CTAG	3 cut(s)	387, 902, 992
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	736
MalI	GATC	2 cut(s)	833, 935
MboI	GATC	2 cut(s)	831, 933
MboII	GAAGA	2 cut(s)	36, 529
MfeI	CAATTG	1 cut(s)	232
MhlI	GDGCHC	3 cut(s)	265, 278, 291
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	6 cut(s)	50, 219, 232, 547, 730, 785
MluNI	TGGCCA	1 cut(s)	564
Mly113I	GGCGCC	1 cut(s)	344
MlyI	GAGTC	1 cut(s)	567
MmeI	TCCRAC	1 cut(s)	426
Mox20I	TGGCCA	1 cut(s)	564
Mph1103I	ATGCAT	1 cut(s)	972
MscI	TGGCCA	1 cut(s)	564
MslI	CAYNNNNRTG	1 cut(s)	807
Msp20I	TGGCCA	1 cut(s)	564
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	813
MspR9I	CCNGG	2 cut(s)	244, 814
MunI	CAATTG	1 cut(s)	232
Mva1269I	GAATGC	3 cut(s)	403, 646, 949
MvaI	CCWGG	1 cut(s)	244
MvnI	CGCG	2 cut(s)	146, 656
MwoI	GCNNNNNNNGC	3 cut(s)	97, 758, 967
NarI	GGCGCC	1 cut(s)	344
NciI	CCSGG	1 cut(s)	814
NdeII	GATC	2 cut(s)	831, 933
NlaIII	CATG	3 cut(s)	104, 569, 974
NlaIV	GGNNCC	1 cut(s)	345
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	736
NsbI	TGCGCA	1 cut(s)	663
NsiI	ATGCAT	1 cut(s)	972
NspI	RCATGY	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	1 cut(s)	641
PctI	GAATGC	3 cut(s)	403, 646, 949
PfeI	GAWTC	1 cut(s)	162
PfoI	TCCNGGA	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	145, 148, 592
PleI	GAGTC	1 cut(s)	567
PluTI	GGCGCC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	567
Psp124BI	GAGCTC	2 cut(s)	265, 278
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	345
RseI	CAYNNNNRTG	1 cut(s)	807
SacI	GAGCTC	2 cut(s)	265, 278
SacII	CCGCGG	1 cut(s)	147
SatI	GCNGC	3 cut(s)	144, 147, 591
Sau3AI	GATC	2 cut(s)	831, 933
SchI	GAGTC	1 cut(s)	567
ScrFI	CCNGG	2 cut(s)	244, 814
SduI	GDGCHC	3 cut(s)	265, 278, 291
SetI	ASST	9 cut(s)	71, 80, 265, 278, 408, 496, 592, 603, 1021
SfaNI	GCATC	1 cut(s)	976
SfoI	GGCGCC	1 cut(s)	345
Sfr303I	CCGCGG	1 cut(s)	147
SgrBI	CCGCGG	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	807
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	6 cut(s)	50, 219, 232, 547, 730, 785
SseBI	AGGCCT	1 cut(s)	380
SsiI	CCGC	5 cut(s)	121, 144, 146, 184, 654
SspDI	GGCGCC	1 cut(s)	343
SspMI	CTAG	3 cut(s)	387, 902, 992
SstI	GAGCTC	2 cut(s)	265, 278
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	2 cut(s)	242, 812
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	3 cut(s)	319, 606, 834
TasI	AATT	6 cut(s)	50, 219, 232, 547, 730, 785
TauI	GCSGC	2 cut(s)	146, 149
TfiI	GAWTC	1 cut(s)	162
TscAI	CASTG	1 cut(s)	961
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	1 cut(s)	590
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	2 cut(s)	17, 100
TspGWI	ACGGA	1 cut(s)	689
TspRI	CASTG	1 cut(s)	961
XapI	RAATTY	2 cut(s)	219, 547
XbaI	TCTAGA	1 cut(s)	386
XceI	RCATGY	1 cut(s)	104
XspI	CTAG	3 cut(s)	387, 902, 992
Zsp2I	ATGCAT	1 cut(s)	972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.